data_2YM6 # _model_server_result.job_id 3aLPh05Ui7LGTBQ2C4KTfA _model_server_result.datetime_utc '2024-10-19 16:43:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ym6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1271}' # _entry.id 2YM6 # _exptl.entry_id 2YM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.316 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1-[(2R)-4-(9H-pyrido[4',3':4,5]pyrrolo[2,3-d]pyrimidin-4-yl)morpholin-2-yl]methanamine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.96 _cell.angle_gamma 90 _cell.entry_id 2YM6 _cell.length_a 45.06 _cell.length_b 65.93 _cell.length_c 58.15 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H16 N6 O' _chem_comp.formula_weight 284.316 _chem_comp.id YM6 _chem_comp.mon_nstd_flag . _chem_comp.name "1-[(2R)-4-(9H-pyrido[4',3':4,5]pyrrolo[2,3-d]pyrimidin-4-yl)morpholin-2-yl]methanamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 YM6 doub 385 n y N1 C6 YM6 sing 386 n y N3 C2 YM6 sing 387 n y C2 H2 YM6 sing 388 n n N3 C4 YM6 doub 389 n y C4 NAM YM6 sing 390 n y C4 C5 YM6 sing 391 n y C5 C6 YM6 doub 392 n y C5 CAQ YM6 sing 393 n y C6 NAU YM6 sing 394 n n CAF NAA YM6 sing 395 n n NAA HNAA YM6 sing 396 n n NAA HNAB YM6 sing 397 n n NAJ CAB YM6 sing 398 n y CAD CAB YM6 doub 399 n y CAB HAB YM6 sing 400 n n CAQ CAD YM6 sing 401 n y CAD HAD YM6 sing 402 n n CAP CAE YM6 sing 403 n y CAE NAJ YM6 doub 404 n y CAE HAE YM6 sing 405 n n CAT CAF YM6 sing 406 n n CAF HAF YM6 sing 407 n n CAF HAFA YM6 sing 408 n n CAH CAG YM6 sing 409 n n OAN CAG YM6 sing 410 n n CAG HAG YM6 sing 411 n n CAG HAGA YM6 sing 412 n n NAU CAH YM6 sing 413 n n CAH HAH YM6 sing 414 n n CAH HAHA YM6 sing 415 n n NAU CAI YM6 sing 416 n n CAI CAT YM6 sing 417 n n CAI HAI YM6 sing 418 n n CAI HAIA YM6 sing 419 n n NAM CAP YM6 sing 420 n y CAT OAN YM6 sing 421 n n CAP CAQ YM6 doub 422 n y CAT HAT YM6 sing 423 n n NAM HNAM YM6 sing 424 n n # _atom_sites.entry_id 2YM6 _atom_sites.fract_transf_matrix[1][1] 0.022193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001536 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YM6 A 1 1271 1271 YM6 YM6 . C 3 EDO A 1 1272 1272 EDO EDO . D 3 EDO A 1 1273 1273 EDO EDO . E 3 EDO A 1 1274 1274 EDO EDO . F 3 EDO A 1 1275 1275 EDO EDO . G 3 EDO A 1 1276 1276 EDO EDO . H 4 HOH A 1 2001 2001 HOH HOH . H 4 HOH A 2 2002 2002 HOH HOH . H 4 HOH A 3 2003 2003 HOH HOH . H 4 HOH A 4 2004 2004 HOH HOH . H 4 HOH A 5 2005 2005 HOH HOH . H 4 HOH A 6 2006 2006 HOH HOH . H 4 HOH A 7 2007 2007 HOH HOH . H 4 HOH A 8 2008 2008 HOH HOH . H 4 HOH A 9 2009 2009 HOH HOH . H 4 HOH A 10 2010 2010 HOH HOH . H 4 HOH A 11 2011 2011 HOH HOH . H 4 HOH A 12 2012 2012 HOH HOH . H 4 HOH A 13 2013 2013 HOH HOH . H 4 HOH A 14 2014 2014 HOH HOH . H 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH A 16 2016 2016 HOH HOH . H 4 HOH A 17 2017 2017 HOH HOH . H 4 HOH A 18 2018 2018 HOH HOH . H 4 HOH A 19 2019 2019 HOH HOH . H 4 HOH A 20 2020 2020 HOH HOH . H 4 HOH A 21 2021 2021 HOH HOH . H 4 HOH A 22 2022 2022 HOH HOH . H 4 HOH A 23 2023 2023 HOH HOH . H 4 HOH A 24 2024 2024 HOH HOH . H 4 HOH A 25 2025 2025 HOH HOH . H 4 HOH A 26 2026 2026 HOH HOH . H 4 HOH A 27 2027 2027 HOH HOH . H 4 HOH A 28 2028 2028 HOH HOH . H 4 HOH A 29 2029 2029 HOH HOH . H 4 HOH A 30 2030 2030 HOH HOH . H 4 HOH A 31 2031 2031 HOH HOH . H 4 HOH A 32 2032 2032 HOH HOH . H 4 HOH A 33 2033 2033 HOH HOH . H 4 HOH A 34 2034 2034 HOH HOH . H 4 HOH A 35 2035 2035 HOH HOH . H 4 HOH A 36 2036 2036 HOH HOH . H 4 HOH A 37 2037 2037 HOH HOH . H 4 HOH A 38 2038 2038 HOH HOH . H 4 HOH A 39 2039 2039 HOH HOH . H 4 HOH A 40 2040 2040 HOH HOH . H 4 HOH A 41 2041 2041 HOH HOH . H 4 HOH A 42 2042 2042 HOH HOH . H 4 HOH A 43 2043 2043 HOH HOH . H 4 HOH A 44 2044 2044 HOH HOH . H 4 HOH A 45 2045 2045 HOH HOH . H 4 HOH A 46 2046 2046 HOH HOH . H 4 HOH A 47 2047 2047 HOH HOH . H 4 HOH A 48 2048 2048 HOH HOH . H 4 HOH A 49 2049 2049 HOH HOH . H 4 HOH A 50 2050 2050 HOH HOH . H 4 HOH A 51 2051 2051 HOH HOH . H 4 HOH A 52 2052 2052 HOH HOH . H 4 HOH A 53 2053 2053 HOH HOH . H 4 HOH A 54 2054 2054 HOH HOH . H 4 HOH A 55 2055 2055 HOH HOH . H 4 HOH A 56 2056 2056 HOH HOH . H 4 HOH A 57 2057 2057 HOH HOH . H 4 HOH A 58 2058 2058 HOH HOH . H 4 HOH A 59 2059 2059 HOH HOH . H 4 HOH A 60 2060 2060 HOH HOH . H 4 HOH A 61 2061 2061 HOH HOH . H 4 HOH A 62 2062 2062 HOH HOH . H 4 HOH A 63 2063 2063 HOH HOH . H 4 HOH A 64 2064 2064 HOH HOH . H 4 HOH A 65 2065 2065 HOH HOH . H 4 HOH A 66 2066 2066 HOH HOH . H 4 HOH A 67 2067 2067 HOH HOH . H 4 HOH A 68 2068 2068 HOH HOH . H 4 HOH A 69 2069 2069 HOH HOH . H 4 HOH A 70 2070 2070 HOH HOH . H 4 HOH A 71 2071 2071 HOH HOH . H 4 HOH A 72 2072 2072 HOH HOH . H 4 HOH A 73 2073 2073 HOH HOH . H 4 HOH A 74 2074 2074 HOH HOH . H 4 HOH A 75 2075 2075 HOH HOH . H 4 HOH A 76 2076 2076 HOH HOH . H 4 HOH A 77 2077 2077 HOH HOH . H 4 HOH A 78 2078 2078 HOH HOH . H 4 HOH A 79 2079 2079 HOH HOH . H 4 HOH A 80 2080 2080 HOH HOH . H 4 HOH A 81 2081 2081 HOH HOH . H 4 HOH A 82 2082 2082 HOH HOH . H 4 HOH A 83 2083 2083 HOH HOH . H 4 HOH A 84 2084 2084 HOH HOH . H 4 HOH A 85 2085 2085 HOH HOH . H 4 HOH A 86 2086 2086 HOH HOH . H 4 HOH A 87 2087 2087 HOH HOH . H 4 HOH A 88 2088 2088 HOH HOH . H 4 HOH A 89 2089 2089 HOH HOH . H 4 HOH A 90 2090 2090 HOH HOH . H 4 HOH A 91 2091 2091 HOH HOH . H 4 HOH A 92 2092 2092 HOH HOH . H 4 HOH A 93 2093 2093 HOH HOH . H 4 HOH A 94 2094 2094 HOH HOH . H 4 HOH A 95 2095 2095 HOH HOH . H 4 HOH A 96 2096 2096 HOH HOH . H 4 HOH A 97 2097 2097 HOH HOH . H 4 HOH A 98 2098 2098 HOH HOH . H 4 HOH A 99 2099 2099 HOH HOH . H 4 HOH A 100 2100 2100 HOH HOH . H 4 HOH A 101 2101 2101 HOH HOH . H 4 HOH A 102 2102 2102 HOH HOH . H 4 HOH A 103 2103 2103 HOH HOH . H 4 HOH A 104 2104 2104 HOH HOH . H 4 HOH A 105 2105 2105 HOH HOH . H 4 HOH A 106 2106 2106 HOH HOH . H 4 HOH A 107 2107 2107 HOH HOH . H 4 HOH A 108 2108 2108 HOH HOH . H 4 HOH A 109 2109 2109 HOH HOH . H 4 HOH A 110 2110 2110 HOH HOH . H 4 HOH A 111 2111 2111 HOH HOH . H 4 HOH A 112 2112 2112 HOH HOH . H 4 HOH A 113 2113 2113 HOH HOH . H 4 HOH A 114 2114 2114 HOH HOH . H 4 HOH A 115 2115 2115 HOH HOH . H 4 HOH A 116 2116 2116 HOH HOH . H 4 HOH A 117 2117 2117 HOH HOH . H 4 HOH A 118 2118 2118 HOH HOH . H 4 HOH A 119 2119 2119 HOH HOH . H 4 HOH A 120 2120 2120 HOH HOH . H 4 HOH A 121 2121 2121 HOH HOH . H 4 HOH A 122 2122 2122 HOH HOH . H 4 HOH A 123 2123 2123 HOH HOH . H 4 HOH A 124 2124 2124 HOH HOH . H 4 HOH A 125 2125 2125 HOH HOH . H 4 HOH A 126 2126 2126 HOH HOH . H 4 HOH A 127 2127 2127 HOH HOH . H 4 HOH A 128 2128 2128 HOH HOH . H 4 HOH A 129 2129 2129 HOH HOH . H 4 HOH A 130 2130 2130 HOH HOH . H 4 HOH A 131 2131 2131 HOH HOH . H 4 HOH A 132 2132 2132 HOH HOH . H 4 HOH A 133 2133 2133 HOH HOH . H 4 HOH A 134 2134 2134 HOH HOH . H 4 HOH A 135 2135 2135 HOH HOH . H 4 HOH A 136 2136 2136 HOH HOH . H 4 HOH A 137 2137 2137 HOH HOH . H 4 HOH A 138 2138 2138 HOH HOH . H 4 HOH A 139 2139 2139 HOH HOH . H 4 HOH A 140 2140 2140 HOH HOH . H 4 HOH A 141 2141 2141 HOH HOH . H 4 HOH A 142 2142 2142 HOH HOH . H 4 HOH A 143 2143 2143 HOH HOH . H 4 HOH A 144 2144 2144 HOH HOH . H 4 HOH A 145 2145 2145 HOH HOH . H 4 HOH A 146 2146 2146 HOH HOH . H 4 HOH A 147 2147 2147 HOH HOH . H 4 HOH A 148 2148 2148 HOH HOH . H 4 HOH A 149 2149 2149 HOH HOH . H 4 HOH A 150 2150 2150 HOH HOH . H 4 HOH A 151 2151 2151 HOH HOH . H 4 HOH A 152 2152 2152 HOH HOH . H 4 HOH A 153 2153 2153 HOH HOH . H 4 HOH A 154 2154 2154 HOH HOH . H 4 HOH A 155 2155 2155 HOH HOH . H 4 HOH A 156 2156 2156 HOH HOH . H 4 HOH A 157 2157 2157 HOH HOH . H 4 HOH A 158 2158 2158 HOH HOH . H 4 HOH A 159 2159 2159 HOH HOH . H 4 HOH A 160 2160 2160 HOH HOH . H 4 HOH A 161 2161 2161 HOH HOH . H 4 HOH A 162 2162 2162 HOH HOH . H 4 HOH A 163 2163 2163 HOH HOH . H 4 HOH A 164 2164 2164 HOH HOH . H 4 HOH A 165 2165 2165 HOH HOH . H 4 HOH A 166 2166 2166 HOH HOH . H 4 HOH A 167 2167 2167 HOH HOH . H 4 HOH A 168 2168 2168 HOH HOH . H 4 HOH A 169 2169 2169 HOH HOH . H 4 HOH A 170 2170 2170 HOH HOH . H 4 HOH A 171 2171 2171 HOH HOH . H 4 HOH A 172 2172 2172 HOH HOH . H 4 HOH A 173 2173 2173 HOH HOH . H 4 HOH A 174 2174 2174 HOH HOH . H 4 HOH A 175 2175 2175 HOH HOH . H 4 HOH A 176 2176 2176 HOH HOH . H 4 HOH A 177 2177 2177 HOH HOH . H 4 HOH A 178 2178 2178 HOH HOH . H 4 HOH A 179 2179 2179 HOH HOH . H 4 HOH A 180 2180 2180 HOH HOH . H 4 HOH A 181 2181 2181 HOH HOH . H 4 HOH A 182 2182 2182 HOH HOH . H 4 HOH A 183 2183 2183 HOH HOH . H 4 HOH A 184 2184 2184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 YM6 . . . B 2 17.829 -0.476 9.612 1 36.96 ? N1 YM6 1271 A 1 HETATM 2 C C2 YM6 . . . B 2 17.747 0.597 8.849 1 36.29 ? C2 YM6 1271 A 1 HETATM 3 N N3 YM6 . . . B 2 16.647 1.328 8.831 1 33.27 ? N3 YM6 1271 A 1 HETATM 4 C C4 YM6 . . . B 2 15.587 0.993 9.577 1 31.38 ? C4 YM6 1271 A 1 HETATM 5 C C5 YM6 . . . B 2 15.623 -0.152 10.362 1 30.79 ? C5 YM6 1271 A 1 HETATM 6 C C6 YM6 . . . B 2 16.828 -0.847 10.428 1 33.26 ? C6 YM6 1271 A 1 HETATM 7 N NAA YM6 . . . B 2 18.418 -3.279 14.914 1 55.07 ? NAA YM6 1271 A 1 HETATM 8 C CAB YM6 . . . B 2 12.499 -0.788 12.387 1 33.15 ? CAB YM6 1271 A 1 HETATM 9 C CAD YM6 . . . B 2 13.799 -1.046 11.952 1 31.81 ? CAD YM6 1271 A 1 HETATM 10 C CAE YM6 . . . B 2 12.36 1.092 11.06 1 30.6 ? CAE YM6 1271 A 1 HETATM 11 C CAF YM6 . . . B 2 18.292 -2.541 13.646 1 50.65 ? CAF YM6 1271 A 1 HETATM 12 C CAG YM6 . . . B 2 16.111 -3.753 12.621 1 43.52 ? CAG YM6 1271 A 1 HETATM 13 C CAH YM6 . . . B 2 15.927 -3.009 11.311 1 42.7 ? CAH YM6 1271 A 1 HETATM 14 C CAI YM6 . . . B 2 18.335 -2.699 11.122 1 41.88 ? CAI YM6 1271 A 1 HETATM 15 N NAJ YM6 . . . B 2 11.825 0.26 11.941 1 34.83 ? NAJ YM6 1271 A 1 HETATM 16 N NAM YM6 . . . B 2 14.395 1.575 9.721 1 37.36 ? NAM YM6 1271 A 1 HETATM 17 O OAN YM6 . . . B 2 17.359 -4.459 12.607 1 47.39 ? OAN YM6 1271 A 1 HETATM 18 C CAP YM6 . . . B 2 13.647 0.887 10.582 1 29.31 ? CAP YM6 1271 A 1 HETATM 19 C CAQ YM6 . . . B 2 14.393 -0.192 11.032 1 31.21 ? CAQ YM6 1271 A 1 HETATM 20 C CAT YM6 . . . B 2 18.43 -3.488 12.435 1 46.16 ? CAT YM6 1271 A 1 HETATM 21 N NAU YM6 . . . B 2 17.022 -2.047 11.108 1 39.93 ? NAU YM6 1271 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #