data_2YNH # _model_server_result.job_id GB0J0_fujXpm7X9F0Ozfog _model_server_result.datetime_utc '2024-11-14 23:18:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ynh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1560}' # _entry.id 2YNH # _exptl.entry_id 2YNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.681 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloranyl-N-[[4-chloranyl-3-(3-chloranyl-5-cyano-phenoxy)-2-fluoranyl-phenyl]methyl]-2-(hydroxymethyl)-1H-imidazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YNH _cell.length_a 118.987 _cell.length_b 154.567 _cell.length_c 156.755 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H12 Cl3 F N4 O3' _chem_comp.formula_weight 469.681 _chem_comp.id EUR _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloranyl-N-[[4-chloranyl-3-(3-chloranyl-5-cyano-phenoxy)-2-fluoranyl-phenyl]methyl]-2-(hydroxymethyl)-1H-imidazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 EUR sing 83 n n C02 C03 EUR sing 84 n n C03 N04 EUR doub 85 n y C03 N08 EUR sing 86 n y N04 C05 EUR sing 87 n y C05 CL1 EUR sing 88 n n C05 C07 EUR doub 89 n y C07 N08 EUR sing 90 n y C07 C09 EUR sing 91 n n C09 O10 EUR doub 92 n n C09 N11 EUR sing 93 n n N11 C12 EUR sing 94 n n C12 C13 EUR sing 95 n n C13 C14 EUR sing 96 n y C13 C29 EUR doub 97 n y C14 C15 EUR doub 98 n y C15 C16 EUR sing 99 n y C16 CL2 EUR sing 100 n n C16 C18 EUR doub 101 n y C18 O19 EUR sing 102 n n C18 C29 EUR sing 103 n y O19 C20 EUR sing 104 n n C20 C21 EUR sing 105 n y C20 C28 EUR doub 106 n y C21 C22 EUR doub 107 n y C22 CL3 EUR sing 108 n n C22 C24 EUR sing 109 n y C24 C25 EUR doub 110 n y C25 C28 EUR sing 111 n y C25 C26 EUR sing 112 n n C26 N27 EUR trip 113 n n C29 F30 EUR sing 114 n n O01 H01 EUR sing 115 n n C02 H021 EUR sing 116 n n C02 H022 EUR sing 117 n n N08 H08 EUR sing 118 n n N11 H11 EUR sing 119 n n C12 H121 EUR sing 120 n n C12 H122 EUR sing 121 n n C14 H14 EUR sing 122 n n C15 H15 EUR sing 123 n n C21 H21 EUR sing 124 n n C28 H28 EUR sing 125 n n C24 H24 EUR sing 126 n n # _atom_sites.entry_id 2YNH _atom_sites.fract_transf_matrix[1][1] 0.008404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TAR A 1 1559 1559 TAR TAR . D 4 EUR A 1 1560 1560 EUR EUR . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH B 1 2001 2001 HOH HOH . F 5 HOH B 2 2002 2002 HOH HOH . F 5 HOH B 3 2003 2003 HOH HOH . F 5 HOH B 4 2004 2004 HOH HOH . F 5 HOH B 5 2005 2005 HOH HOH . F 5 HOH B 6 2006 2006 HOH HOH . F 5 HOH B 7 2007 2007 HOH HOH . F 5 HOH B 8 2008 2008 HOH HOH . F 5 HOH B 9 2009 2009 HOH HOH . F 5 HOH B 10 2010 2010 HOH HOH . F 5 HOH B 11 2011 2011 HOH HOH . F 5 HOH B 12 2012 2012 HOH HOH . F 5 HOH B 13 2013 2013 HOH HOH . F 5 HOH B 14 2014 2014 HOH HOH . F 5 HOH B 15 2015 2015 HOH HOH . F 5 HOH B 16 2016 2016 HOH HOH . F 5 HOH B 17 2017 2017 HOH HOH . F 5 HOH B 18 2018 2018 HOH HOH . F 5 HOH B 19 2019 2019 HOH HOH . F 5 HOH B 20 2020 2020 HOH HOH . F 5 HOH B 21 2021 2021 HOH HOH . F 5 HOH B 22 2022 2022 HOH HOH . F 5 HOH B 23 2023 2023 HOH HOH . F 5 HOH B 24 2024 2024 HOH HOH . F 5 HOH B 25 2025 2025 HOH HOH . F 5 HOH B 26 2026 2026 HOH HOH . F 5 HOH B 27 2027 2027 HOH HOH . F 5 HOH B 28 2028 2028 HOH HOH . F 5 HOH B 29 2029 2029 HOH HOH . F 5 HOH B 30 2030 2030 HOH HOH . F 5 HOH B 31 2031 2031 HOH HOH . F 5 HOH B 32 2032 2032 HOH HOH . F 5 HOH B 33 2033 2033 HOH HOH . F 5 HOH B 34 2034 2034 HOH HOH . F 5 HOH B 35 2035 2035 HOH HOH . F 5 HOH B 36 2036 2036 HOH HOH . F 5 HOH B 37 2037 2037 HOH HOH . F 5 HOH B 38 2038 2038 HOH HOH . F 5 HOH B 39 2039 2039 HOH HOH . F 5 HOH B 40 2040 2040 HOH HOH . F 5 HOH B 41 2041 2041 HOH HOH . F 5 HOH B 42 2042 2042 HOH HOH . F 5 HOH B 43 2043 2043 HOH HOH . F 5 HOH B 44 2044 2044 HOH HOH . F 5 HOH B 45 2045 2045 HOH HOH . F 5 HOH B 46 2046 2046 HOH HOH . F 5 HOH B 47 2047 2047 HOH HOH . F 5 HOH B 48 2048 2048 HOH HOH . F 5 HOH B 49 2049 2049 HOH HOH . F 5 HOH B 50 2050 2050 HOH HOH . F 5 HOH B 51 2051 2051 HOH HOH . F 5 HOH B 52 2052 2052 HOH HOH . F 5 HOH B 53 2053 2053 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 EUR . . . D 4 -5.802 71.547 12.008 1 31.38 ? O01 EUR 1560 A 1 HETATM 2 C C02 EUR . . . D 4 -5.731 71.858 13.39 1 30.38 ? C02 EUR 1560 A 1 HETATM 3 C C03 EUR . . . D 4 -5.732 70.552 14.123 1 29.83 ? C03 EUR 1560 A 1 HETATM 4 N N04 EUR . . . D 4 -5.412 70.406 15.395 1 30.41 ? N04 EUR 1560 A 1 HETATM 5 C C05 EUR . . . D 4 -5.546 69.081 15.657 1 29.29 ? C05 EUR 1560 A 1 HETATM 6 CL CL1 EUR . . . D 4 -5.198 68.475 17.246 1 32.23 ? CL1 EUR 1560 A 1 HETATM 7 C C07 EUR . . . D 4 -5.93 68.383 14.522 1 27.86 ? C07 EUR 1560 A 1 HETATM 8 N N08 EUR . . . D 4 -6.065 69.37 13.552 1 28.87 ? N08 EUR 1560 A 1 HETATM 9 C C09 EUR . . . D 4 -6.239 66.974 14.307 1 26.27 ? C09 EUR 1560 A 1 HETATM 10 O O10 EUR . . . D 4 -6.774 66.565 13.277 1 25.86 ? O10 EUR 1560 A 1 HETATM 11 N N11 EUR . . . D 4 -5.906 66.154 15.373 1 24.72 ? N11 EUR 1560 A 1 HETATM 12 C C12 EUR . . . D 4 -6.237 64.734 15.364 1 23.56 ? C12 EUR 1560 A 1 HETATM 13 C C13 EUR . . . D 4 -7.744 64.754 15.512 1 22.64 ? C13 EUR 1560 A 1 HETATM 14 C C14 EUR . . . D 4 -8.606 64.355 14.489 1 22.52 ? C14 EUR 1560 A 1 HETATM 15 C C15 EUR . . . D 4 -9.986 64.414 14.641 1 22.52 ? C15 EUR 1560 A 1 HETATM 16 C C16 EUR . . . D 4 -10.5 64.91 15.834 1 22.62 ? C16 EUR 1560 A 1 HETATM 17 CL CL2 EUR . . . D 4 -12.199 65.036 16.12 1 24.45 ? CL2 EUR 1560 A 1 HETATM 18 C C18 EUR . . . D 4 -9.679 65.332 16.865 1 22 ? C18 EUR 1560 A 1 HETATM 19 O O19 EUR . . . D 4 -10.248 65.81 18.018 1 21.33 ? O19 EUR 1560 A 1 HETATM 20 C C20 EUR . . . D 4 -10.124 65.227 19.256 1 20.78 ? C20 EUR 1560 A 1 HETATM 21 C C21 EUR . . . D 4 -10.192 63.837 19.321 1 20.73 ? C21 EUR 1560 A 1 HETATM 22 C C22 EUR . . . D 4 -10.083 63.228 20.563 1 20.68 ? C22 EUR 1560 A 1 HETATM 23 CL CL3 EUR . . . D 4 -10.166 61.489 20.64 1 21.02 ? CL3 EUR 1560 A 1 HETATM 24 C C24 EUR . . . D 4 -9.913 63.942 21.74 1 20.72 ? C24 EUR 1560 A 1 HETATM 25 C C25 EUR . . . D 4 -9.859 65.331 21.641 1 20.76 ? C25 EUR 1560 A 1 HETATM 26 C C28 EUR . . . D 4 -9.964 65.983 20.408 1 20.79 ? C28 EUR 1560 A 1 HETATM 27 C C26 EUR . . . D 4 -9.687 66.129 22.812 1 20.84 ? C26 EUR 1560 A 1 HETATM 28 N N27 EUR . . . D 4 -9.549 66.807 23.743 1 21.19 ? N27 EUR 1560 A 1 HETATM 29 C C29 EUR . . . D 4 -8.31 65.26 16.678 1 22.01 ? C29 EUR 1560 A 1 HETATM 30 F F30 EUR . . . D 4 -7.536 65.678 17.702 1 21.8 ? F30 EUR 1560 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #