data_2YOZ # _model_server_result.job_id AHUkb1PIVVkP-AxMeHC_Vg _model_server_result.datetime_utc '2024-10-19 15:29:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yoz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1381}' # _entry.id 2YOZ # _exptl.entry_id 2YOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.45 _cell.angle_gamma 90 _cell.entry_id 2YOZ _cell.length_a 38.4 _cell.length_b 47.88 _cell.length_c 51.15 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 2YOZ _atom_sites.fract_transf_matrix[1][1] 0.026042 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OVE A 1 1379 1379 OVE OVE . C 3 GOL A 1 1380 1380 GOL GOL . D 4 1PE A 1 1381 1381 1PE 1PE . E 5 ACT A 1 1382 1382 ACT ACT . F 5 ACT A 1 1383 1383 ACT ACT . G 5 ACT A 1 1384 1384 ACT ACT . H 6 CL A 1 1385 1385 CL CL . I 5 ACT A 1 1386 1386 ACT ACT . J 7 HOH A 1 2001 2001 HOH HOH . J 7 HOH A 2 2002 2002 HOH HOH . J 7 HOH A 3 2003 2003 HOH HOH . J 7 HOH A 4 2004 2004 HOH HOH . J 7 HOH A 5 2005 2005 HOH HOH . J 7 HOH A 6 2006 2006 HOH HOH . J 7 HOH A 7 2007 2007 HOH HOH . J 7 HOH A 8 2008 2008 HOH HOH . J 7 HOH A 9 2009 2009 HOH HOH . J 7 HOH A 10 2010 2010 HOH HOH . J 7 HOH A 11 2011 2011 HOH HOH . J 7 HOH A 12 2012 2012 HOH HOH . J 7 HOH A 13 2013 2013 HOH HOH . J 7 HOH A 14 2014 2014 HOH HOH . J 7 HOH A 15 2015 2015 HOH HOH . J 7 HOH A 16 2016 2016 HOH HOH . J 7 HOH A 17 2017 2017 HOH HOH . J 7 HOH A 18 2018 2018 HOH HOH . J 7 HOH A 19 2019 2019 HOH HOH . J 7 HOH A 20 2020 2020 HOH HOH . J 7 HOH A 21 2021 2021 HOH HOH . J 7 HOH A 22 2022 2022 HOH HOH . J 7 HOH A 23 2023 2023 HOH HOH . J 7 HOH A 24 2024 2024 HOH HOH . J 7 HOH A 25 2025 2025 HOH HOH . J 7 HOH A 26 2026 2026 HOH HOH . J 7 HOH A 27 2027 2027 HOH HOH . J 7 HOH A 28 2028 2028 HOH HOH . J 7 HOH A 29 2029 2029 HOH HOH . J 7 HOH A 30 2030 2030 HOH HOH . J 7 HOH A 31 2031 2031 HOH HOH . J 7 HOH A 32 2032 2032 HOH HOH . J 7 HOH A 33 2033 2033 HOH HOH . J 7 HOH A 34 2034 2034 HOH HOH . J 7 HOH A 35 2035 2035 HOH HOH . J 7 HOH A 36 2036 2036 HOH HOH . J 7 HOH A 37 2037 2037 HOH HOH . J 7 HOH A 38 2038 2038 HOH HOH . J 7 HOH A 39 2039 2039 HOH HOH . J 7 HOH A 40 2040 2040 HOH HOH . J 7 HOH A 41 2041 2041 HOH HOH . J 7 HOH A 42 2042 2042 HOH HOH . J 7 HOH A 43 2043 2043 HOH HOH . J 7 HOH A 44 2044 2044 HOH HOH . J 7 HOH A 45 2045 2045 HOH HOH . J 7 HOH A 46 2046 2046 HOH HOH . J 7 HOH A 47 2047 2047 HOH HOH . J 7 HOH A 48 2048 2048 HOH HOH . J 7 HOH A 49 2049 2049 HOH HOH . J 7 HOH A 50 2050 2050 HOH HOH . J 7 HOH A 51 2051 2051 HOH HOH . J 7 HOH A 52 2052 2052 HOH HOH . J 7 HOH A 53 2053 2053 HOH HOH . J 7 HOH A 54 2054 2054 HOH HOH . J 7 HOH A 55 2055 2055 HOH HOH . J 7 HOH A 56 2056 2056 HOH HOH . J 7 HOH A 57 2057 2057 HOH HOH . J 7 HOH A 58 2058 2058 HOH HOH . J 7 HOH A 59 2059 2059 HOH HOH . J 7 HOH A 60 2060 2060 HOH HOH . J 7 HOH A 61 2061 2061 HOH HOH . J 7 HOH A 62 2062 2062 HOH HOH . J 7 HOH A 63 2063 2063 HOH HOH . J 7 HOH A 64 2064 2064 HOH HOH . J 7 HOH A 65 2065 2065 HOH HOH . J 7 HOH A 66 2066 2066 HOH HOH . J 7 HOH A 67 2067 2067 HOH HOH . J 7 HOH A 68 2068 2068 HOH HOH . J 7 HOH A 69 2069 2069 HOH HOH . J 7 HOH A 70 2070 2070 HOH HOH . J 7 HOH A 71 2071 2071 HOH HOH . J 7 HOH A 72 2072 2072 HOH HOH . J 7 HOH A 73 2073 2073 HOH HOH . J 7 HOH A 74 2074 2074 HOH HOH . J 7 HOH A 75 2075 2075 HOH HOH . J 7 HOH A 76 2076 2076 HOH HOH . J 7 HOH A 77 2077 2077 HOH HOH . J 7 HOH A 78 2078 2078 HOH HOH . J 7 HOH A 79 2079 2079 HOH HOH . J 7 HOH A 80 2080 2080 HOH HOH . J 7 HOH A 81 2081 2081 HOH HOH . J 7 HOH A 82 2082 2082 HOH HOH . J 7 HOH A 83 2083 2083 HOH HOH . J 7 HOH A 84 2084 2084 HOH HOH . J 7 HOH A 85 2085 2085 HOH HOH . J 7 HOH A 86 2086 2086 HOH HOH . J 7 HOH A 87 2087 2087 HOH HOH . J 7 HOH A 88 2088 2088 HOH HOH . J 7 HOH A 89 2089 2089 HOH HOH . J 7 HOH A 90 2090 2090 HOH HOH . J 7 HOH A 91 2091 2091 HOH HOH . J 7 HOH A 92 2092 2092 HOH HOH . J 7 HOH A 93 2093 2093 HOH HOH . J 7 HOH A 94 2094 2094 HOH HOH . J 7 HOH A 95 2095 2095 HOH HOH . J 7 HOH A 96 2096 2096 HOH HOH . J 7 HOH A 97 2097 2097 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . D 4 22.904 -7.265 45.921 1 55.74 ? OH2 1PE 1381 A 1 HETATM 2 C C12 1PE . . . D 4 22.461 -8.429 45.212 1 53.36 ? C12 1PE 1381 A 1 HETATM 3 C C22 1PE . . . D 4 23.657 -9.173 44.627 1 53.24 ? C22 1PE 1381 A 1 HETATM 4 O OH3 1PE . . . D 4 23.621 -10.541 45.029 1 55.77 ? OH3 1PE 1381 A 1 HETATM 5 C C13 1PE . . . D 4 24.613 -12.76 44.928 1 47.67 ? C13 1PE 1381 A 1 HETATM 6 C C23 1PE . . . D 4 24.62 -11.33 44.381 1 55.49 ? C23 1PE 1381 A 1 HETATM 7 O OH4 1PE . . . D 4 25.538 -12.911 46.01 1 36.53 ? OH4 1PE 1381 A 1 HETATM 8 O OH5 1PE . . . D 4 27.096 -11.907 48.658 1 52.87 ? OH5 1PE 1381 A 1 HETATM 9 C C15 1PE . . . D 4 28.174 -10.136 49.892 1 45.28 ? C15 1PE 1381 A 1 HETATM 10 C C25 1PE . . . D 4 27.819 -11.615 49.853 1 49.82 ? C25 1PE 1381 A 1 HETATM 11 O OH6 1PE . . . D 4 26.986 -9.38 49.687 1 42.6 ? OH6 1PE 1381 A 1 HETATM 12 C C16 1PE . . . D 4 26.053 -7.367 48.774 1 41.72 ? C16 1PE 1381 A 1 HETATM 13 C C26 1PE . . . D 4 27.243 -7.993 49.493 1 40.15 ? C26 1PE 1381 A 1 HETATM 14 O OH7 1PE . . . D 4 26.465 -6.844 47.505 1 44.62 ? OH7 1PE 1381 A 1 HETATM 15 H HO2 1PE . . . D 4 22.139 -6.8 46.288 1 66.89 ? HO2 1PE 1381 A 1 HETATM 16 H H121 1PE . . . D 4 21.914 -9.087 45.89 1 64.04 ? H121 1PE 1381 A 1 HETATM 17 H H122 1PE . . . D 4 21.784 -8.133 44.408 1 64.04 ? H122 1PE 1381 A 1 HETATM 18 H H221 1PE . . . D 4 24.583 -8.712 44.975 1 63.88 ? H221 1PE 1381 A 1 HETATM 19 H H222 1PE . . . D 4 23.634 -9.109 43.537 1 63.88 ? H222 1PE 1381 A 1 HETATM 20 H H131 1PE . . . D 4 23.608 -13.011 45.273 1 57.2 ? H131 1PE 1381 A 1 HETATM 21 H H132 1PE . . . D 4 24.876 -13.455 44.128 1 57.2 ? H132 1PE 1381 A 1 HETATM 22 H H231 1PE . . . D 4 24.431 -11.349 43.306 1 66.59 ? H231 1PE 1381 A 1 HETATM 23 H H232 1PE . . . D 4 25.602 -10.881 44.543 1 66.59 ? H232 1PE 1381 A 1 HETATM 24 H H151 1PE . . . D 4 28.902 -9.906 49.112 1 54.33 ? H151 1PE 1381 A 1 HETATM 25 H H152 1PE . . . D 4 28.614 -9.883 50.86 1 54.33 ? H152 1PE 1381 A 1 HETATM 26 H H251 1PE . . . D 4 28.731 -12.215 49.887 1 59.79 ? H251 1PE 1381 A 1 HETATM 27 H H252 1PE . . . D 4 27.211 -11.871 50.724 1 59.79 ? H252 1PE 1381 A 1 HETATM 28 H H161 1PE . . . D 4 25.276 -8.12 48.626 1 50.07 ? H161 1PE 1381 A 1 HETATM 29 H H162 1PE . . . D 4 25.635 -6.564 49.385 1 50.07 ? H162 1PE 1381 A 1 HETATM 30 H H261 1PE . . . D 4 28.148 -7.862 48.896 1 48.18 ? H261 1PE 1381 A 1 HETATM 31 H H262 1PE . . . D 4 27.395 -7.504 50.457 1 48.18 ? H262 1PE 1381 A 1 HETATM 32 H HO7 1PE . . . D 4 25.704 -6.449 47.057 1 53.54 ? HO7 1PE 1381 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #