data_2YP0 # _model_server_result.job_id 0Z7HzVnOT_pv3nTEJW29lQ _model_server_result.datetime_utc '2025-02-18 02:31:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 2YP0 # _exptl.entry_id 2YP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.87 _cell.angle_gamma 90 _cell.entry_id 2YP0 _cell.length_a 39.83 _cell.length_b 47.74 _cell.length_c 50.93 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 2YP0 _atom_sites.fract_transf_matrix[1][1] 0.025107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00347 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OVE A 1 401 1379 OVE OVE . C 3 GOL A 1 402 1380 GOL GOL . D 2 OVE A 1 403 1381 OVE OVE . E 4 1PE A 1 404 1382 1PE 1PE . F 5 ACY A 1 405 1383 ACY ACY . G 6 HOH A 1 501 2022 HOH HOH . G 6 HOH A 2 502 2039 HOH HOH . G 6 HOH A 3 503 2006 HOH HOH . G 6 HOH A 4 504 2061 HOH HOH . G 6 HOH A 5 505 2065 HOH HOH . G 6 HOH A 6 506 2041 HOH HOH . G 6 HOH A 7 507 2040 HOH HOH . G 6 HOH A 8 508 2033 HOH HOH . G 6 HOH A 9 509 2060 HOH HOH . G 6 HOH A 10 510 2072 HOH HOH . G 6 HOH A 11 511 2009 HOH HOH . G 6 HOH A 12 512 2049 HOH HOH . G 6 HOH A 13 513 2018 HOH HOH . G 6 HOH A 14 514 2071 HOH HOH . G 6 HOH A 15 515 2031 HOH HOH . G 6 HOH A 16 516 2001 HOH HOH . G 6 HOH A 17 517 2046 HOH HOH . G 6 HOH A 18 518 2066 HOH HOH . G 6 HOH A 19 519 2044 HOH HOH . G 6 HOH A 20 520 2048 HOH HOH . G 6 HOH A 21 521 2005 HOH HOH . G 6 HOH A 22 522 2015 HOH HOH . G 6 HOH A 23 523 2020 HOH HOH . G 6 HOH A 24 524 2069 HOH HOH . G 6 HOH A 25 525 2050 HOH HOH . G 6 HOH A 26 526 2024 HOH HOH . G 6 HOH A 27 527 2053 HOH HOH . G 6 HOH A 28 528 2021 HOH HOH . G 6 HOH A 29 529 2011 HOH HOH . G 6 HOH A 30 530 2014 HOH HOH . G 6 HOH A 31 531 2062 HOH HOH . G 6 HOH A 32 532 2017 HOH HOH . G 6 HOH A 33 533 2038 HOH HOH . G 6 HOH A 34 534 2013 HOH HOH . G 6 HOH A 35 535 2059 HOH HOH . G 6 HOH A 36 536 2010 HOH HOH . G 6 HOH A 37 537 2056 HOH HOH . G 6 HOH A 38 538 2025 HOH HOH . G 6 HOH A 39 539 2007 HOH HOH . G 6 HOH A 40 540 2070 HOH HOH . G 6 HOH A 41 541 2067 HOH HOH . G 6 HOH A 42 542 2030 HOH HOH . G 6 HOH A 43 543 2016 HOH HOH . G 6 HOH A 44 544 2019 HOH HOH . G 6 HOH A 45 545 2023 HOH HOH . G 6 HOH A 46 546 2064 HOH HOH . G 6 HOH A 47 547 2027 HOH HOH . G 6 HOH A 48 548 2057 HOH HOH . G 6 HOH A 49 549 2045 HOH HOH . G 6 HOH A 50 550 2068 HOH HOH . G 6 HOH A 51 551 2042 HOH HOH . G 6 HOH A 52 552 2076 HOH HOH . G 6 HOH A 53 553 2026 HOH HOH . G 6 HOH A 54 554 2063 HOH HOH . G 6 HOH A 55 555 2012 HOH HOH . G 6 HOH A 56 556 2074 HOH HOH . G 6 HOH A 57 557 2003 HOH HOH . G 6 HOH A 58 558 2035 HOH HOH . G 6 HOH A 59 559 2047 HOH HOH . G 6 HOH A 60 560 2028 HOH HOH . G 6 HOH A 61 561 2032 HOH HOH . G 6 HOH A 62 562 2043 HOH HOH . G 6 HOH A 63 563 2008 HOH HOH . G 6 HOH A 64 564 2034 HOH HOH . G 6 HOH A 65 565 2054 HOH HOH . G 6 HOH A 66 566 2073 HOH HOH . G 6 HOH A 67 567 2058 HOH HOH . G 6 HOH A 68 568 2075 HOH HOH . G 6 HOH A 69 569 2002 HOH HOH . G 6 HOH A 70 570 2004 HOH HOH . G 6 HOH A 71 571 2029 HOH HOH . G 6 HOH A 72 572 2051 HOH HOH . G 6 HOH A 73 573 2052 HOH HOH . G 6 HOH A 74 574 2055 HOH HOH . G 6 HOH A 75 575 2037 HOH HOH . G 6 HOH A 76 576 2036 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 44.641 20.062 79.649 1 42.1 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 3 44.502 21.291 78.972 1 47.87 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 3 46.119 19.711 79.78 1 42.71 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 3 46.684 19.513 78.502 1 42.1 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 3 46.298 18.461 80.637 1 37.97 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 3 45.07 17.787 80.805 1 26.2 ? O3 GOL 402 A 1 HETATM 7 H H11 GOL . . . C 3 44.124 19.277 79.096 1 50.52 ? H11 GOL 402 A 1 HETATM 8 H H12 GOL . . . C 3 44.19 20.134 80.639 1 50.52 ? H12 GOL 402 A 1 HETATM 9 H HO1 GOL . . . C 3 44.879 21.212 78.071 1 57.45 ? HO1 GOL 402 A 1 HETATM 10 H H2 GOL . . . C 3 46.625 20.541 80.275 1 51.25 ? H2 GOL 402 A 1 HETATM 11 H HO2 GOL . . . C 3 46.21 18.787 78.045 1 50.52 ? HO2 GOL 402 A 1 HETATM 12 H H31 GOL . . . C 3 46.695 18.742 81.613 1 45.56 ? H31 GOL 402 A 1 HETATM 13 H H32 GOL . . . C 3 47.017 17.794 80.162 1 45.56 ? H32 GOL 402 A 1 HETATM 14 H HO3 GOL . . . C 3 45.219 16.955 81.301 1 31.44 ? HO3 GOL 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #