data_2YP0 # _model_server_result.job_id m6lwMVGjLbVwdxrOKNk7bg _model_server_result.datetime_utc '2024-11-28 22:06:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 2YP0 # _exptl.entry_id 2YP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.87 _cell.angle_gamma 90 _cell.entry_id 2YP0 _cell.length_a 39.83 _cell.length_b 47.74 _cell.length_c 50.93 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 2YP0 _atom_sites.fract_transf_matrix[1][1] 0.025107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00347 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OVE A 1 401 1379 OVE OVE . C 3 GOL A 1 402 1380 GOL GOL . D 2 OVE A 1 403 1381 OVE OVE . E 4 1PE A 1 404 1382 1PE 1PE . F 5 ACY A 1 405 1383 ACY ACY . G 6 HOH A 1 501 2022 HOH HOH . G 6 HOH A 2 502 2039 HOH HOH . G 6 HOH A 3 503 2006 HOH HOH . G 6 HOH A 4 504 2061 HOH HOH . G 6 HOH A 5 505 2065 HOH HOH . G 6 HOH A 6 506 2041 HOH HOH . G 6 HOH A 7 507 2040 HOH HOH . G 6 HOH A 8 508 2033 HOH HOH . G 6 HOH A 9 509 2060 HOH HOH . G 6 HOH A 10 510 2072 HOH HOH . G 6 HOH A 11 511 2009 HOH HOH . G 6 HOH A 12 512 2049 HOH HOH . G 6 HOH A 13 513 2018 HOH HOH . G 6 HOH A 14 514 2071 HOH HOH . G 6 HOH A 15 515 2031 HOH HOH . G 6 HOH A 16 516 2001 HOH HOH . G 6 HOH A 17 517 2046 HOH HOH . G 6 HOH A 18 518 2066 HOH HOH . G 6 HOH A 19 519 2044 HOH HOH . G 6 HOH A 20 520 2048 HOH HOH . G 6 HOH A 21 521 2005 HOH HOH . G 6 HOH A 22 522 2015 HOH HOH . G 6 HOH A 23 523 2020 HOH HOH . G 6 HOH A 24 524 2069 HOH HOH . G 6 HOH A 25 525 2050 HOH HOH . G 6 HOH A 26 526 2024 HOH HOH . G 6 HOH A 27 527 2053 HOH HOH . G 6 HOH A 28 528 2021 HOH HOH . G 6 HOH A 29 529 2011 HOH HOH . G 6 HOH A 30 530 2014 HOH HOH . G 6 HOH A 31 531 2062 HOH HOH . G 6 HOH A 32 532 2017 HOH HOH . G 6 HOH A 33 533 2038 HOH HOH . G 6 HOH A 34 534 2013 HOH HOH . G 6 HOH A 35 535 2059 HOH HOH . G 6 HOH A 36 536 2010 HOH HOH . G 6 HOH A 37 537 2056 HOH HOH . G 6 HOH A 38 538 2025 HOH HOH . G 6 HOH A 39 539 2007 HOH HOH . G 6 HOH A 40 540 2070 HOH HOH . G 6 HOH A 41 541 2067 HOH HOH . G 6 HOH A 42 542 2030 HOH HOH . G 6 HOH A 43 543 2016 HOH HOH . G 6 HOH A 44 544 2019 HOH HOH . G 6 HOH A 45 545 2023 HOH HOH . G 6 HOH A 46 546 2064 HOH HOH . G 6 HOH A 47 547 2027 HOH HOH . G 6 HOH A 48 548 2057 HOH HOH . G 6 HOH A 49 549 2045 HOH HOH . G 6 HOH A 50 550 2068 HOH HOH . G 6 HOH A 51 551 2042 HOH HOH . G 6 HOH A 52 552 2076 HOH HOH . G 6 HOH A 53 553 2026 HOH HOH . G 6 HOH A 54 554 2063 HOH HOH . G 6 HOH A 55 555 2012 HOH HOH . G 6 HOH A 56 556 2074 HOH HOH . G 6 HOH A 57 557 2003 HOH HOH . G 6 HOH A 58 558 2035 HOH HOH . G 6 HOH A 59 559 2047 HOH HOH . G 6 HOH A 60 560 2028 HOH HOH . G 6 HOH A 61 561 2032 HOH HOH . G 6 HOH A 62 562 2043 HOH HOH . G 6 HOH A 63 563 2008 HOH HOH . G 6 HOH A 64 564 2034 HOH HOH . G 6 HOH A 65 565 2054 HOH HOH . G 6 HOH A 66 566 2073 HOH HOH . G 6 HOH A 67 567 2058 HOH HOH . G 6 HOH A 68 568 2075 HOH HOH . G 6 HOH A 69 569 2002 HOH HOH . G 6 HOH A 70 570 2004 HOH HOH . G 6 HOH A 71 571 2029 HOH HOH . G 6 HOH A 72 572 2051 HOH HOH . G 6 HOH A 73 573 2052 HOH HOH . G 6 HOH A 74 574 2055 HOH HOH . G 6 HOH A 75 575 2037 HOH HOH . G 6 HOH A 76 576 2036 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . E 4 43.372 28.639 67.811 1 68.09 ? OH2 1PE 404 A 1 HETATM 2 C C12 1PE . . . E 4 43.05 27.373 68.399 1 62.81 ? C12 1PE 404 A 1 HETATM 3 C C22 1PE . . . E 4 41.535 27.22 68.427 1 57.63 ? C22 1PE 404 A 1 HETATM 4 O OH3 1PE . . . E 4 41.052 26.897 67.124 1 52.72 ? OH3 1PE 404 A 1 HETATM 5 C C13 1PE . . . E 4 38.954 28.01 66.65 1 42.37 ? C13 1PE 404 A 1 HETATM 6 C C23 1PE . . . E 4 40.467 28.023 66.473 1 43.47 ? C23 1PE 404 A 1 HETATM 7 O OH4 1PE . . . E 4 38.65 28.517 67.949 1 45.56 ? OH4 1PE 404 A 1 HETATM 8 C C14 1PE . . . E 4 37.04 29.407 69.51 1 40.59 ? C14 1PE 404 A 1 HETATM 9 C C24 1PE . . . E 4 37.271 28.843 68.111 1 46.54 ? C24 1PE 404 A 1 HETATM 10 O OH5 1PE . . . E 4 35.697 29.14 69.902 1 45.95 ? OH5 1PE 404 A 1 HETATM 11 C C15 1PE . . . E 4 34.243 28.45 71.669 1 32.23 ? C15 1PE 404 A 1 HETATM 12 C C25 1PE . . . E 4 35.478 29.272 71.307 1 41.29 ? C25 1PE 404 A 1 HETATM 13 O OH6 1PE . . . E 4 33.99 28.413 73.073 1 30.06 ? OH6 1PE 404 A 1 HETATM 14 C C16 1PE . . . E 4 32.607 27.272 74.725 1 34.37 ? C16 1PE 404 A 1 HETATM 15 C C26 1PE . . . E 4 32.704 27.834 73.311 1 27.16 ? C26 1PE 404 A 1 HETATM 16 O OH7 1PE . . . E 4 33.763 26.477 75.022 1 40.16 ? OH7 1PE 404 A 1 HETATM 17 H HO2 1PE . . . E 4 44.333 28.748 67.787 1 81.71 ? HO2 1PE 404 A 1 HETATM 18 H H121 1PE . . . E 4 43.448 27.322 69.415 1 75.37 ? H121 1PE 404 A 1 HETATM 19 H H122 1PE . . . E 4 43.495 26.566 67.814 1 75.37 ? H122 1PE 404 A 1 HETATM 20 H H221 1PE . . . E 4 41.258 26.429 69.128 1 69.15 ? H221 1PE 404 A 1 HETATM 21 H H222 1PE . . . E 4 41.078 28.151 68.769 1 69.15 ? H222 1PE 404 A 1 HETATM 22 H H131 1PE . . . E 4 38.575 26.992 66.548 1 50.85 ? H131 1PE 404 A 1 HETATM 23 H H132 1PE . . . E 4 38.483 28.633 65.886 1 50.85 ? H132 1PE 404 A 1 HETATM 24 H H231 1PE . . . E 4 40.712 27.999 65.409 1 52.16 ? H231 1PE 404 A 1 HETATM 25 H H232 1PE . . . E 4 40.878 28.944 66.894 1 52.16 ? H232 1PE 404 A 1 HETATM 26 H H141 1PE . . . E 4 37.22 30.484 69.51 1 48.7 ? H141 1PE 404 A 1 HETATM 27 H H142 1PE . . . E 4 37.732 28.944 70.216 1 48.7 ? H142 1PE 404 A 1 HETATM 28 H H241 1PE . . . E 4 36.661 27.948 67.969 1 55.85 ? H241 1PE 404 A 1 HETATM 29 H H242 1PE . . . E 4 36.974 29.58 67.362 1 55.85 ? H242 1PE 404 A 1 HETATM 30 H H151 1PE . . . E 4 34.375 27.429 71.304 1 38.67 ? H151 1PE 404 A 1 HETATM 31 H H152 1PE . . . E 4 33.373 28.871 71.161 1 38.67 ? H152 1PE 404 A 1 HETATM 32 H H251 1PE . . . E 4 35.319 30.321 71.565 1 49.54 ? H251 1PE 404 A 1 HETATM 33 H H252 1PE . . . E 4 36.347 28.906 71.858 1 49.54 ? H252 1PE 404 A 1 HETATM 34 H H161 1PE . . . E 4 31.708 26.659 74.815 1 41.25 ? H161 1PE 404 A 1 HETATM 35 H H162 1PE . . . E 4 32.532 28.092 75.442 1 41.25 ? H162 1PE 404 A 1 HETATM 36 H H261 1PE . . . E 4 32.526 27.035 72.588 1 32.6 ? H261 1PE 404 A 1 HETATM 37 H H262 1PE . . . E 4 31.932 28.593 73.168 1 32.6 ? H262 1PE 404 A 1 HETATM 38 H HO7 1PE . . . E 4 33.69 26.126 75.92 1 48.19 ? HO7 1PE 404 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #