data_2YP0 # _model_server_result.job_id 2YE3y-G06eIAuO3Xn2uMPw _model_server_result.datetime_utc '2024-11-28 22:20:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 2YP0 # _exptl.entry_id 2YP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.87 _cell.angle_gamma 90 _cell.entry_id 2YP0 _cell.length_a 39.83 _cell.length_b 47.74 _cell.length_c 50.93 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 38 n n C OXT ACY sing 39 n n C CH3 ACY sing 40 n n OXT HXT ACY sing 41 n n CH3 H1 ACY sing 42 n n CH3 H2 ACY sing 43 n n CH3 H3 ACY sing 44 n n # _atom_sites.entry_id 2YP0 _atom_sites.fract_transf_matrix[1][1] 0.025107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00347 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OVE A 1 401 1379 OVE OVE . C 3 GOL A 1 402 1380 GOL GOL . D 2 OVE A 1 403 1381 OVE OVE . E 4 1PE A 1 404 1382 1PE 1PE . F 5 ACY A 1 405 1383 ACY ACY . G 6 HOH A 1 501 2022 HOH HOH . G 6 HOH A 2 502 2039 HOH HOH . G 6 HOH A 3 503 2006 HOH HOH . G 6 HOH A 4 504 2061 HOH HOH . G 6 HOH A 5 505 2065 HOH HOH . G 6 HOH A 6 506 2041 HOH HOH . G 6 HOH A 7 507 2040 HOH HOH . G 6 HOH A 8 508 2033 HOH HOH . G 6 HOH A 9 509 2060 HOH HOH . G 6 HOH A 10 510 2072 HOH HOH . G 6 HOH A 11 511 2009 HOH HOH . G 6 HOH A 12 512 2049 HOH HOH . G 6 HOH A 13 513 2018 HOH HOH . G 6 HOH A 14 514 2071 HOH HOH . G 6 HOH A 15 515 2031 HOH HOH . G 6 HOH A 16 516 2001 HOH HOH . G 6 HOH A 17 517 2046 HOH HOH . G 6 HOH A 18 518 2066 HOH HOH . G 6 HOH A 19 519 2044 HOH HOH . G 6 HOH A 20 520 2048 HOH HOH . G 6 HOH A 21 521 2005 HOH HOH . G 6 HOH A 22 522 2015 HOH HOH . G 6 HOH A 23 523 2020 HOH HOH . G 6 HOH A 24 524 2069 HOH HOH . G 6 HOH A 25 525 2050 HOH HOH . G 6 HOH A 26 526 2024 HOH HOH . G 6 HOH A 27 527 2053 HOH HOH . G 6 HOH A 28 528 2021 HOH HOH . G 6 HOH A 29 529 2011 HOH HOH . G 6 HOH A 30 530 2014 HOH HOH . G 6 HOH A 31 531 2062 HOH HOH . G 6 HOH A 32 532 2017 HOH HOH . G 6 HOH A 33 533 2038 HOH HOH . G 6 HOH A 34 534 2013 HOH HOH . G 6 HOH A 35 535 2059 HOH HOH . G 6 HOH A 36 536 2010 HOH HOH . G 6 HOH A 37 537 2056 HOH HOH . G 6 HOH A 38 538 2025 HOH HOH . G 6 HOH A 39 539 2007 HOH HOH . G 6 HOH A 40 540 2070 HOH HOH . G 6 HOH A 41 541 2067 HOH HOH . G 6 HOH A 42 542 2030 HOH HOH . G 6 HOH A 43 543 2016 HOH HOH . G 6 HOH A 44 544 2019 HOH HOH . G 6 HOH A 45 545 2023 HOH HOH . G 6 HOH A 46 546 2064 HOH HOH . G 6 HOH A 47 547 2027 HOH HOH . G 6 HOH A 48 548 2057 HOH HOH . G 6 HOH A 49 549 2045 HOH HOH . G 6 HOH A 50 550 2068 HOH HOH . G 6 HOH A 51 551 2042 HOH HOH . G 6 HOH A 52 552 2076 HOH HOH . G 6 HOH A 53 553 2026 HOH HOH . G 6 HOH A 54 554 2063 HOH HOH . G 6 HOH A 55 555 2012 HOH HOH . G 6 HOH A 56 556 2074 HOH HOH . G 6 HOH A 57 557 2003 HOH HOH . G 6 HOH A 58 558 2035 HOH HOH . G 6 HOH A 59 559 2047 HOH HOH . G 6 HOH A 60 560 2028 HOH HOH . G 6 HOH A 61 561 2032 HOH HOH . G 6 HOH A 62 562 2043 HOH HOH . G 6 HOH A 63 563 2008 HOH HOH . G 6 HOH A 64 564 2034 HOH HOH . G 6 HOH A 65 565 2054 HOH HOH . G 6 HOH A 66 566 2073 HOH HOH . G 6 HOH A 67 567 2058 HOH HOH . G 6 HOH A 68 568 2075 HOH HOH . G 6 HOH A 69 569 2002 HOH HOH . G 6 HOH A 70 570 2004 HOH HOH . G 6 HOH A 71 571 2029 HOH HOH . G 6 HOH A 72 572 2051 HOH HOH . G 6 HOH A 73 573 2052 HOH HOH . G 6 HOH A 74 574 2055 HOH HOH . G 6 HOH A 75 575 2037 HOH HOH . G 6 HOH A 76 576 2036 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . F 5 44.947 7.563 61.485 1 38.72 ? C ACY 405 A 1 HETATM 2 O O ACY . . . F 5 45.852 8.301 61.934 1 53.36 ? O ACY 405 A 1 HETATM 3 O OXT ACY . . . F 5 43.827 7.435 62.021 1 24.81 ? OXT ACY 405 A 1 HETATM 4 C CH3 ACY . . . F 5 45.227 6.781 60.235 1 37.99 ? CH3 ACY 405 A 1 HETATM 5 H H1 ACY . . . F 5 44.992 5.73 60.402 1 45.59 ? H1 ACY 405 A 1 HETATM 6 H H2 ACY . . . F 5 44.61 7.164 59.422 1 45.59 ? H2 ACY 405 A 1 HETATM 7 H H3 ACY . . . F 5 46.279 6.883 59.969 1 45.59 ? H3 ACY 405 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 73 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 1312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #