data_2YPQ
#
_model_server_result.job_id            UnH0lAMACT-yX4BSppOtfA 
_model_server_result.datetime_utc      '2024-11-24 09:48:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ypq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1464}' 
#
_entry.id    2YPQ 
#
_exptl.entry_id    2YPQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              204.225 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRYPTOPHAN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2YPQ 
_cell.length_a            202.777 
_cell.length_b            202.777 
_cell.length_c            66.747 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YPQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -44.498 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 87 A CYS 87 1_555 D MN MN . A MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc2 A NE2 HIS 369 A HIS 369 1_555 D MN MN . A MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc3 A OE2 GLU 411 A GLU 411 1_555 D MN MN . A MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.567 ? 
metalc ? metalc4 A OD2 ASP 441 A ASP 441 1_555 D MN MN . A MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc5 B SG CYS 87 B CYS 87 1_555 M MN MN . B MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc6 B NE2 HIS 369 B HIS 369 1_555 M MN MN . B MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc7 B OE2 GLU 411 B GLU 411 1_555 M MN MN . B MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc8 B OD2 ASP 441 B ASP 441 1_555 M MN MN . B MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
#
_chem_comp.formula           'C11 H12 N2 O2' 
_chem_comp.formula_weight    204.225 
_chem_comp.id                TRP 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              TRYPTOPHAN 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA TRP sing 327 n n 
N H TRP sing 328 n n 
N H2 TRP sing 329 n n 
CA C TRP sing 330 n n 
CA CB TRP sing 331 n n 
CA HA TRP sing 332 n n 
C O TRP doub 333 n n 
C OXT TRP sing 334 n n 
CB CG TRP sing 335 n n 
CB HB2 TRP sing 336 n n 
CB HB3 TRP sing 337 n n 
CG CD1 TRP doub 338 n y 
CG CD2 TRP sing 339 n y 
CD1 NE1 TRP sing 340 n y 
CD1 HD1 TRP sing 341 n n 
CD2 CE2 TRP doub 342 n y 
CD2 CE3 TRP sing 343 n y 
NE1 CE2 TRP sing 344 n y 
NE1 HE1 TRP sing 345 n n 
CE2 CZ2 TRP sing 346 n y 
CE3 CZ3 TRP doub 347 n y 
CE3 HE3 TRP sing 348 n n 
CZ2 CH2 TRP doub 349 n y 
CZ2 HZ2 TRP sing 350 n n 
CZ3 CH2 TRP sing 351 n y 
CZ3 HZ3 TRP sing 352 n n 
CH2 HH2 TRP sing 353 n n 
OXT HXT TRP sing 354 n n 
#
_atom_sites.entry_id                     2YPQ 
_atom_sites.fract_transf_matrix[1][1]    0.004932 
_atom_sites.fract_transf_matrix[1][2]    0.002847 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005694 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014982 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TYR A 1 1465 1465 TYR TYR . 
D 3 MN A 1 1463 1463 MN MN . 
E 4 TRP A 1 1464 1464 TRP TRP . 
F 5 PO4 A 1 1466 1466 PO4 PO4 . 
G 6 SO4 A 1 1467 1467 SO4 SO4 . 
H 7 CL A 1 1468 1468 CL CL . 
I 8 GOL A 1 1469 1469 GOL GOL . 
J 7 CL A 1 1500 1500 CL CL . 
K 2 TYR B 1 1465 1465 TYR TYR . 
L 2 TYR B 1 1466 1466 TYR TYR . 
M 3 MN B 1 1463 1463 MN MN . 
N 4 TRP B 1 1464 1464 TRP TRP . 
O 5 PO4 B 1 1467 1467 PO4 PO4 . 
P 6 SO4 B 1 1468 1468 SO4 SO4 . 
Q 8 GOL B 1 1469 1469 GOL GOL . 
R 8 GOL B 1 1470 1470 GOL GOL . 
S 8 GOL B 1 1471 1471 GOL GOL . 
T 9 HOH A 1 2001 2001 HOH HOH . 
T 9 HOH A 2 2002 2002 HOH HOH . 
T 9 HOH A 3 2003 2003 HOH HOH . 
T 9 HOH A 4 2004 2004 HOH HOH . 
T 9 HOH A 5 2005 2005 HOH HOH . 
T 9 HOH A 6 2006 2006 HOH HOH . 
T 9 HOH A 7 2007 2007 HOH HOH . 
T 9 HOH A 8 2008 2008 HOH HOH . 
T 9 HOH A 9 2009 2009 HOH HOH . 
T 9 HOH A 10 2010 2010 HOH HOH . 
T 9 HOH A 11 2011 2011 HOH HOH . 
T 9 HOH A 12 2012 2012 HOH HOH . 
T 9 HOH A 13 2013 2013 HOH HOH . 
T 9 HOH A 14 2014 2014 HOH HOH . 
T 9 HOH A 15 2015 2015 HOH HOH . 
T 9 HOH A 16 2016 2016 HOH HOH . 
T 9 HOH A 17 2017 2017 HOH HOH . 
T 9 HOH A 18 2018 2018 HOH HOH . 
T 9 HOH A 19 2019 2019 HOH HOH . 
T 9 HOH A 20 2020 2020 HOH HOH . 
T 9 HOH A 21 2021 2021 HOH HOH . 
T 9 HOH A 22 2022 2022 HOH HOH . 
T 9 HOH A 23 2023 2023 HOH HOH . 
T 9 HOH A 24 2024 2024 HOH HOH . 
T 9 HOH A 25 2025 2025 HOH HOH . 
T 9 HOH A 26 2026 2026 HOH HOH . 
T 9 HOH A 27 2027 2027 HOH HOH . 
T 9 HOH A 28 2028 2028 HOH HOH . 
T 9 HOH A 29 2029 2029 HOH HOH . 
T 9 HOH A 30 2030 2030 HOH HOH . 
T 9 HOH A 31 2031 2031 HOH HOH . 
T 9 HOH A 32 2032 2032 HOH HOH . 
T 9 HOH A 33 2033 2033 HOH HOH . 
T 9 HOH A 34 2034 2034 HOH HOH . 
T 9 HOH A 35 2035 2035 HOH HOH . 
U 9 HOH B 1 2001 2001 HOH HOH . 
U 9 HOH B 2 2002 2002 HOH HOH . 
U 9 HOH B 3 2003 2003 HOH HOH . 
U 9 HOH B 4 2004 2004 HOH HOH . 
U 9 HOH B 5 2005 2005 HOH HOH . 
U 9 HOH B 6 2006 2006 HOH HOH . 
U 9 HOH B 7 2007 2007 HOH HOH . 
U 9 HOH B 8 2008 2008 HOH HOH . 
U 9 HOH B 9 2009 2009 HOH HOH . 
U 9 HOH B 10 2010 2010 HOH HOH . 
U 9 HOH B 11 2011 2011 HOH HOH . 
U 9 HOH B 12 2012 2012 HOH HOH . 
U 9 HOH B 13 2013 2013 HOH HOH . 
U 9 HOH B 14 2014 2014 HOH HOH . 
U 9 HOH B 15 2015 2015 HOH HOH . 
U 9 HOH B 16 2016 2016 HOH HOH . 
U 9 HOH B 17 2017 2017 HOH HOH . 
U 9 HOH B 18 2018 2018 HOH HOH . 
U 9 HOH B 19 2019 2019 HOH HOH . 
U 9 HOH B 20 2020 2020 HOH HOH . 
U 9 HOH B 21 2021 2021 HOH HOH . 
U 9 HOH B 22 2022 2022 HOH HOH . 
U 9 HOH B 23 2023 2023 HOH HOH . 
U 9 HOH B 24 2024 2024 HOH HOH . 
U 9 HOH B 25 2025 2025 HOH HOH . 
U 9 HOH B 26 2026 2026 HOH HOH . 
U 9 HOH B 27 2027 2027 HOH HOH . 
U 9 HOH B 28 2028 2028 HOH HOH . 
U 9 HOH B 29 2029 2029 HOH HOH . 
U 9 HOH B 30 2030 2030 HOH HOH . 
U 9 HOH B 31 2031 2031 HOH HOH . 
U 9 HOH B 32 2032 2032 HOH HOH . 
U 9 HOH B 33 2033 2033 HOH HOH . 
U 9 HOH B 34 2034 2034 HOH HOH . 
U 9 HOH B 35 2035 2035 HOH HOH . 
U 9 HOH B 36 2036 2036 HOH HOH . 
U 9 HOH B 37 2037 2037 HOH HOH . 
U 9 HOH B 38 2038 2038 HOH HOH . 
U 9 HOH B 39 2039 2039 HOH HOH . 
U 9 HOH B 40 2040 2040 HOH HOH . 
U 9 HOH B 41 2041 2041 HOH HOH . 
U 9 HOH B 42 2042 2042 HOH HOH . 
U 9 HOH B 43 2043 2043 HOH HOH . 
U 9 HOH B 44 2044 2044 HOH HOH . 
U 9 HOH B 45 2045 2045 HOH HOH . 
U 9 HOH B 46 2046 2046 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N TRP . . . N 4 93.912 -10.134 -22.322 1 30.12 ? N TRP 1464 B 1 
HETATM 2 C CA TRP . . . N 4 92.777 -9.731 -21.44 1 35.69 ? CA TRP 1464 B 1 
HETATM 3 C C TRP . . . N 4 92.052 -10.902 -20.867 1 37.39 ? C TRP 1464 B 1 
HETATM 4 O O TRP . . . N 4 92.507 -12.065 -20.939 1 35.6 ? O TRP 1464 B 1 
HETATM 5 C CB TRP . . . N 4 91.728 -9.006 -22.262 1 26.76 ? CB TRP 1464 B 1 
HETATM 6 C CG TRP . . . N 4 91.384 -9.93 -23.385 1 27.58 ? CG TRP 1464 B 1 
HETATM 7 C CD1 TRP . . . N 4 92.163 -10.247 -24.483 1 35.8 ? CD1 TRP 1464 B 1 
HETATM 8 C CD2 TRP . . . N 4 90.195 -10.75 -23.527 1 23.55 ? CD2 TRP 1464 B 1 
HETATM 9 N NE1 TRP . . . N 4 91.543 -11.149 -25.281 1 34.43 ? NE1 TRP 1464 B 1 
HETATM 10 C CE2 TRP . . . N 4 90.382 -11.521 -24.77 1 18.83 ? CE2 TRP 1464 B 1 
HETATM 11 C CE3 TRP . . . N 4 89.052 -10.934 -22.773 1 26.19 ? CE3 TRP 1464 B 1 
HETATM 12 C CZ2 TRP . . . N 4 89.487 -12.462 -25.189 1 16 ? CZ2 TRP 1464 B 1 
HETATM 13 C CZ3 TRP . . . N 4 88.079 -11.812 -23.245 1 19.49 ? CZ3 TRP 1464 B 1 
HETATM 14 C CH2 TRP . . . N 4 88.302 -12.554 -24.426 1 33.69 ? CH2 TRP 1464 B 1 
HETATM 15 O OXT TRP . . . N 4 90.971 -10.553 -20.365 1 29.33 ? OXT TRP 1464 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#