data_2YPQ # _model_server_result.job_id jAUjdv1dGFmtwUOxXunHRg _model_server_result.datetime_utc '2024-11-28 03:08:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ypq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1468}' # _entry.id 2YPQ # _exptl.entry_id 2YPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2YPQ _cell.length_a 202.777 _cell.length_b 202.777 _cell.length_c 66.747 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -44.498 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 87 A CYS 87 1_555 D MN MN . A MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc2 A NE2 HIS 369 A HIS 369 1_555 D MN MN . A MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc3 A OE2 GLU 411 A GLU 411 1_555 D MN MN . A MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.567 ? metalc ? metalc4 A OD2 ASP 441 A ASP 441 1_555 D MN MN . A MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc5 B SG CYS 87 B CYS 87 1_555 M MN MN . B MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc6 B NE2 HIS 369 B HIS 369 1_555 M MN MN . B MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc7 B OE2 GLU 411 B GLU 411 1_555 M MN MN . B MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc8 B OD2 ASP 441 B ASP 441 1_555 M MN MN . B MN 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 307 n n S O2 SO4 doub 308 n n S O3 SO4 sing 309 n n S O4 SO4 sing 310 n n # _atom_sites.entry_id 2YPQ _atom_sites.fract_transf_matrix[1][1] 0.004932 _atom_sites.fract_transf_matrix[1][2] 0.002847 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TYR A 1 1465 1465 TYR TYR . D 3 MN A 1 1463 1463 MN MN . E 4 TRP A 1 1464 1464 TRP TRP . F 5 PO4 A 1 1466 1466 PO4 PO4 . G 6 SO4 A 1 1467 1467 SO4 SO4 . H 7 CL A 1 1468 1468 CL CL . I 8 GOL A 1 1469 1469 GOL GOL . J 7 CL A 1 1500 1500 CL CL . K 2 TYR B 1 1465 1465 TYR TYR . L 2 TYR B 1 1466 1466 TYR TYR . M 3 MN B 1 1463 1463 MN MN . N 4 TRP B 1 1464 1464 TRP TRP . O 5 PO4 B 1 1467 1467 PO4 PO4 . P 6 SO4 B 1 1468 1468 SO4 SO4 . Q 8 GOL B 1 1469 1469 GOL GOL . R 8 GOL B 1 1470 1470 GOL GOL . S 8 GOL B 1 1471 1471 GOL GOL . T 9 HOH A 1 2001 2001 HOH HOH . T 9 HOH A 2 2002 2002 HOH HOH . T 9 HOH A 3 2003 2003 HOH HOH . T 9 HOH A 4 2004 2004 HOH HOH . T 9 HOH A 5 2005 2005 HOH HOH . T 9 HOH A 6 2006 2006 HOH HOH . T 9 HOH A 7 2007 2007 HOH HOH . T 9 HOH A 8 2008 2008 HOH HOH . T 9 HOH A 9 2009 2009 HOH HOH . T 9 HOH A 10 2010 2010 HOH HOH . T 9 HOH A 11 2011 2011 HOH HOH . T 9 HOH A 12 2012 2012 HOH HOH . T 9 HOH A 13 2013 2013 HOH HOH . T 9 HOH A 14 2014 2014 HOH HOH . T 9 HOH A 15 2015 2015 HOH HOH . T 9 HOH A 16 2016 2016 HOH HOH . T 9 HOH A 17 2017 2017 HOH HOH . T 9 HOH A 18 2018 2018 HOH HOH . T 9 HOH A 19 2019 2019 HOH HOH . T 9 HOH A 20 2020 2020 HOH HOH . T 9 HOH A 21 2021 2021 HOH HOH . T 9 HOH A 22 2022 2022 HOH HOH . T 9 HOH A 23 2023 2023 HOH HOH . T 9 HOH A 24 2024 2024 HOH HOH . T 9 HOH A 25 2025 2025 HOH HOH . T 9 HOH A 26 2026 2026 HOH HOH . T 9 HOH A 27 2027 2027 HOH HOH . T 9 HOH A 28 2028 2028 HOH HOH . T 9 HOH A 29 2029 2029 HOH HOH . T 9 HOH A 30 2030 2030 HOH HOH . T 9 HOH A 31 2031 2031 HOH HOH . T 9 HOH A 32 2032 2032 HOH HOH . T 9 HOH A 33 2033 2033 HOH HOH . T 9 HOH A 34 2034 2034 HOH HOH . T 9 HOH A 35 2035 2035 HOH HOH . U 9 HOH B 1 2001 2001 HOH HOH . U 9 HOH B 2 2002 2002 HOH HOH . U 9 HOH B 3 2003 2003 HOH HOH . U 9 HOH B 4 2004 2004 HOH HOH . U 9 HOH B 5 2005 2005 HOH HOH . U 9 HOH B 6 2006 2006 HOH HOH . U 9 HOH B 7 2007 2007 HOH HOH . U 9 HOH B 8 2008 2008 HOH HOH . U 9 HOH B 9 2009 2009 HOH HOH . U 9 HOH B 10 2010 2010 HOH HOH . U 9 HOH B 11 2011 2011 HOH HOH . U 9 HOH B 12 2012 2012 HOH HOH . U 9 HOH B 13 2013 2013 HOH HOH . U 9 HOH B 14 2014 2014 HOH HOH . U 9 HOH B 15 2015 2015 HOH HOH . U 9 HOH B 16 2016 2016 HOH HOH . U 9 HOH B 17 2017 2017 HOH HOH . U 9 HOH B 18 2018 2018 HOH HOH . U 9 HOH B 19 2019 2019 HOH HOH . U 9 HOH B 20 2020 2020 HOH HOH . U 9 HOH B 21 2021 2021 HOH HOH . U 9 HOH B 22 2022 2022 HOH HOH . U 9 HOH B 23 2023 2023 HOH HOH . U 9 HOH B 24 2024 2024 HOH HOH . U 9 HOH B 25 2025 2025 HOH HOH . U 9 HOH B 26 2026 2026 HOH HOH . U 9 HOH B 27 2027 2027 HOH HOH . U 9 HOH B 28 2028 2028 HOH HOH . U 9 HOH B 29 2029 2029 HOH HOH . U 9 HOH B 30 2030 2030 HOH HOH . U 9 HOH B 31 2031 2031 HOH HOH . U 9 HOH B 32 2032 2032 HOH HOH . U 9 HOH B 33 2033 2033 HOH HOH . U 9 HOH B 34 2034 2034 HOH HOH . U 9 HOH B 35 2035 2035 HOH HOH . U 9 HOH B 36 2036 2036 HOH HOH . U 9 HOH B 37 2037 2037 HOH HOH . U 9 HOH B 38 2038 2038 HOH HOH . U 9 HOH B 39 2039 2039 HOH HOH . U 9 HOH B 40 2040 2040 HOH HOH . U 9 HOH B 41 2041 2041 HOH HOH . U 9 HOH B 42 2042 2042 HOH HOH . U 9 HOH B 43 2043 2043 HOH HOH . U 9 HOH B 44 2044 2044 HOH HOH . U 9 HOH B 45 2045 2045 HOH HOH . U 9 HOH B 46 2046 2046 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . P 6 77.075 -43.991 -14.61 1 120.08 ? S SO4 1468 B 1 HETATM 2 O O1 SO4 . . . P 6 76.36 -43.938 -13.287 1 77.77 ? O1 SO4 1468 B 1 HETATM 3 O O2 SO4 . . . P 6 78.504 -43.598 -14.387 1 81.35 ? O2 SO4 1468 B 1 HETATM 4 O O3 SO4 . . . P 6 76.51 -43.162 -15.726 1 55.17 ? O3 SO4 1468 B 1 HETATM 5 O O4 SO4 . . . P 6 76.949 -45.415 -15.03 1 84.68 ? O4 SO4 1468 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #