data_2YQJ # _model_server_result.job_id ScM4PIoftLaajUDeY0iO1Q _model_server_result.datetime_utc '2024-11-14 20:47:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1201}' # _entry.id 2YQJ # _exptl.entry_id 2YQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.07 _cell.angle_beta 98.11 _cell.angle_gamma 92.93 _cell.entry_id 2YQJ _cell.length_a 47.556 _cell.length_b 61.975 _cell.length_c 90.249 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 204 A CYS 204 1_555 A SG CYS 221 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? disulf ? disulf2 B SG CYS 204 B CYS 204 1_555 B SG CYS 221 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc1 A O ASN 74 A ASN 74 1_555 E MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A OD1 ASN 74 A ASN 74 1_555 E MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc3 A O THR 77 A THR 77 1_555 E MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 A OG1 THR 77 A THR 77 1_555 E MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 E MG MG . A MG 1201 1_555 J O HOH . A HOH 1445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2YQJ _atom_sites.fract_transf_matrix[1][1] 0.021028 _atom_sites.fract_transf_matrix[1][2] 0.001077 _atom_sites.fract_transf_matrix[1][3] 0.003005 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016157 _atom_sites.fract_transf_matrix[2][3] 0.000138 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1101 1101 SO4 SO4 . D 2 SO4 A 1 1102 1102 SO4 SO4 . E 3 MG A 1 1201 1201 MG MG2 . F 4 UD1 A 1 1001 1001 UD1 UD1 . G 5 GOL A 1 1301 1301 GOL GOL . H 2 SO4 B 1 2102 2102 SO4 SO4 . I 4 UD1 B 1 2001 2001 UD1 UD1 . J 6 HOH A 1 1302 1 HOH HOH . J 6 HOH A 2 1303 2 HOH HOH . J 6 HOH A 3 1304 3 HOH HOH . J 6 HOH A 4 1305 4 HOH HOH . J 6 HOH A 5 1306 6 HOH HOH . J 6 HOH A 6 1307 7 HOH HOH . J 6 HOH A 7 1308 8 HOH HOH . J 6 HOH A 8 1309 9 HOH HOH . J 6 HOH A 9 1310 11 HOH HOH . J 6 HOH A 10 1311 13 HOH HOH . J 6 HOH A 11 1312 14 HOH HOH . J 6 HOH A 12 1313 15 HOH HOH . J 6 HOH A 13 1314 16 HOH HOH . J 6 HOH A 14 1315 17 HOH HOH . J 6 HOH A 15 1316 18 HOH HOH . J 6 HOH A 16 1317 20 HOH HOH . J 6 HOH A 17 1318 21 HOH HOH . J 6 HOH A 18 1319 22 HOH HOH . J 6 HOH A 19 1320 23 HOH HOH . J 6 HOH A 20 1321 24 HOH HOH . J 6 HOH A 21 1322 25 HOH HOH . J 6 HOH A 22 1323 26 HOH HOH . J 6 HOH A 23 1324 27 HOH HOH . J 6 HOH A 24 1325 29 HOH HOH . J 6 HOH A 25 1326 32 HOH HOH . J 6 HOH A 26 1327 35 HOH HOH . J 6 HOH A 27 1328 37 HOH HOH . J 6 HOH A 28 1329 39 HOH HOH . J 6 HOH A 29 1330 42 HOH HOH . J 6 HOH A 30 1331 43 HOH HOH . J 6 HOH A 31 1332 45 HOH HOH . J 6 HOH A 32 1333 46 HOH HOH . J 6 HOH A 33 1334 47 HOH HOH . J 6 HOH A 34 1335 48 HOH HOH . J 6 HOH A 35 1336 51 HOH HOH . J 6 HOH A 36 1337 52 HOH HOH . J 6 HOH A 37 1338 53 HOH HOH . J 6 HOH A 38 1339 54 HOH HOH . J 6 HOH A 39 1340 56 HOH HOH . J 6 HOH A 40 1341 57 HOH HOH . J 6 HOH A 41 1342 58 HOH HOH . J 6 HOH A 42 1343 60 HOH HOH . J 6 HOH A 43 1344 61 HOH HOH . J 6 HOH A 44 1345 62 HOH HOH . J 6 HOH A 45 1346 63 HOH HOH . J 6 HOH A 46 1347 65 HOH HOH . J 6 HOH A 47 1348 66 HOH HOH . J 6 HOH A 48 1349 67 HOH HOH . J 6 HOH A 49 1350 68 HOH HOH . J 6 HOH A 50 1351 69 HOH HOH . J 6 HOH A 51 1352 72 HOH HOH . J 6 HOH A 52 1353 73 HOH HOH . J 6 HOH A 53 1354 74 HOH HOH . J 6 HOH A 54 1355 75 HOH HOH . J 6 HOH A 55 1356 76 HOH HOH . J 6 HOH A 56 1357 78 HOH HOH . J 6 HOH A 57 1358 79 HOH HOH . J 6 HOH A 58 1359 80 HOH HOH . J 6 HOH A 59 1360 82 HOH HOH . J 6 HOH A 60 1361 84 HOH HOH . J 6 HOH A 61 1362 85 HOH HOH . J 6 HOH A 62 1363 86 HOH HOH . J 6 HOH A 63 1364 87 HOH HOH . J 6 HOH A 64 1365 88 HOH HOH . J 6 HOH A 65 1366 89 HOH HOH . J 6 HOH A 66 1367 90 HOH HOH . J 6 HOH A 67 1368 92 HOH HOH . J 6 HOH A 68 1369 93 HOH HOH . J 6 HOH A 69 1370 94 HOH HOH . J 6 HOH A 70 1371 95 HOH HOH . J 6 HOH A 71 1372 97 HOH HOH . J 6 HOH A 72 1373 98 HOH HOH . J 6 HOH A 73 1374 99 HOH HOH . J 6 HOH A 74 1375 101 HOH HOH . J 6 HOH A 75 1376 103 HOH HOH . J 6 HOH A 76 1377 104 HOH HOH . J 6 HOH A 77 1378 105 HOH HOH . J 6 HOH A 78 1379 106 HOH HOH . J 6 HOH A 79 1380 108 HOH HOH . J 6 HOH A 80 1381 109 HOH HOH . J 6 HOH A 81 1382 110 HOH HOH . J 6 HOH A 82 1383 112 HOH HOH . J 6 HOH A 83 1384 113 HOH HOH . J 6 HOH A 84 1385 114 HOH HOH . J 6 HOH A 85 1386 116 HOH HOH . J 6 HOH A 86 1387 119 HOH HOH . J 6 HOH A 87 1388 120 HOH HOH . J 6 HOH A 88 1389 123 HOH HOH . J 6 HOH A 89 1390 128 HOH HOH . J 6 HOH A 90 1391 129 HOH HOH . J 6 HOH A 91 1392 130 HOH HOH . J 6 HOH A 92 1393 131 HOH HOH . J 6 HOH A 93 1394 134 HOH HOH . J 6 HOH A 94 1395 137 HOH HOH . J 6 HOH A 95 1396 138 HOH HOH . J 6 HOH A 96 1397 139 HOH HOH . J 6 HOH A 97 1398 141 HOH HOH . J 6 HOH A 98 1399 143 HOH HOH . J 6 HOH A 99 1400 144 HOH HOH . J 6 HOH A 100 1401 147 HOH HOH . J 6 HOH A 101 1402 148 HOH HOH . J 6 HOH A 102 1403 149 HOH HOH . J 6 HOH A 103 1404 150 HOH HOH . J 6 HOH A 104 1405 151 HOH HOH . J 6 HOH A 105 1406 156 HOH HOH . J 6 HOH A 106 1407 157 HOH HOH . J 6 HOH A 107 1408 159 HOH HOH . J 6 HOH A 108 1409 160 HOH HOH . J 6 HOH A 109 1410 161 HOH HOH . J 6 HOH A 110 1411 162 HOH HOH . J 6 HOH A 111 1412 163 HOH HOH . J 6 HOH A 112 1413 164 HOH HOH . J 6 HOH A 113 1414 165 HOH HOH . J 6 HOH A 114 1415 168 HOH HOH . J 6 HOH A 115 1416 169 HOH HOH . J 6 HOH A 116 1417 170 HOH HOH . J 6 HOH A 117 1418 172 HOH HOH . J 6 HOH A 118 1419 174 HOH HOH . J 6 HOH A 119 1420 175 HOH HOH . J 6 HOH A 120 1421 178 HOH HOH . J 6 HOH A 121 1422 180 HOH HOH . J 6 HOH A 122 1423 182 HOH HOH . J 6 HOH A 123 1424 184 HOH HOH . J 6 HOH A 124 1425 186 HOH HOH . J 6 HOH A 125 1426 187 HOH HOH . J 6 HOH A 126 1427 189 HOH HOH . J 6 HOH A 127 1428 191 HOH HOH . J 6 HOH A 128 1429 193 HOH HOH . J 6 HOH A 129 1430 196 HOH HOH . J 6 HOH A 130 1431 201 HOH HOH . J 6 HOH A 131 1432 204 HOH HOH . J 6 HOH A 132 1433 205 HOH HOH . J 6 HOH A 133 1434 206 HOH HOH . J 6 HOH A 134 1435 208 HOH HOH . J 6 HOH A 135 1436 210 HOH HOH . J 6 HOH A 136 1437 212 HOH HOH . J 6 HOH A 137 1438 213 HOH HOH . J 6 HOH A 138 1439 216 HOH HOH . J 6 HOH A 139 1440 217 HOH HOH . J 6 HOH A 140 1441 218 HOH HOH . J 6 HOH A 141 1442 220 HOH HOH . J 6 HOH A 142 1443 221 HOH HOH . J 6 HOH A 143 1444 222 HOH HOH . J 6 HOH A 144 1445 223 HOH HOH . K 6 HOH B 1 2103 5 HOH HOH . K 6 HOH B 2 2104 10 HOH HOH . K 6 HOH B 3 2105 12 HOH HOH . K 6 HOH B 4 2106 19 HOH HOH . K 6 HOH B 5 2107 28 HOH HOH . K 6 HOH B 6 2108 30 HOH HOH . K 6 HOH B 7 2109 31 HOH HOH . K 6 HOH B 8 2110 33 HOH HOH . K 6 HOH B 9 2111 34 HOH HOH . K 6 HOH B 10 2112 36 HOH HOH . K 6 HOH B 11 2113 38 HOH HOH . K 6 HOH B 12 2114 40 HOH HOH . K 6 HOH B 13 2115 41 HOH HOH . K 6 HOH B 14 2116 44 HOH HOH . K 6 HOH B 15 2117 49 HOH HOH . K 6 HOH B 16 2118 50 HOH HOH . K 6 HOH B 17 2119 55 HOH HOH . K 6 HOH B 18 2120 59 HOH HOH . K 6 HOH B 19 2121 64 HOH HOH . K 6 HOH B 20 2122 70 HOH HOH . K 6 HOH B 21 2123 71 HOH HOH . K 6 HOH B 22 2124 77 HOH HOH . K 6 HOH B 23 2125 81 HOH HOH . K 6 HOH B 24 2126 83 HOH HOH . K 6 HOH B 25 2127 91 HOH HOH . K 6 HOH B 26 2128 96 HOH HOH . K 6 HOH B 27 2129 100 HOH HOH . K 6 HOH B 28 2130 102 HOH HOH . K 6 HOH B 29 2131 107 HOH HOH . K 6 HOH B 30 2132 111 HOH HOH . K 6 HOH B 31 2133 115 HOH HOH . K 6 HOH B 32 2134 117 HOH HOH . K 6 HOH B 33 2135 118 HOH HOH . K 6 HOH B 34 2136 121 HOH HOH . K 6 HOH B 35 2137 122 HOH HOH . K 6 HOH B 36 2138 124 HOH HOH . K 6 HOH B 37 2139 125 HOH HOH . K 6 HOH B 38 2140 126 HOH HOH . K 6 HOH B 39 2141 127 HOH HOH . K 6 HOH B 40 2142 132 HOH HOH . K 6 HOH B 41 2143 133 HOH HOH . K 6 HOH B 42 2144 135 HOH HOH . K 6 HOH B 43 2145 136 HOH HOH . K 6 HOH B 44 2146 140 HOH HOH . K 6 HOH B 45 2147 142 HOH HOH . K 6 HOH B 46 2148 145 HOH HOH . K 6 HOH B 47 2149 146 HOH HOH . K 6 HOH B 48 2150 152 HOH HOH . K 6 HOH B 49 2151 153 HOH HOH . K 6 HOH B 50 2152 154 HOH HOH . K 6 HOH B 51 2153 155 HOH HOH . K 6 HOH B 52 2154 158 HOH HOH . K 6 HOH B 53 2155 166 HOH HOH . K 6 HOH B 54 2156 167 HOH HOH . K 6 HOH B 55 2157 171 HOH HOH . K 6 HOH B 56 2158 173 HOH HOH . K 6 HOH B 57 2159 176 HOH HOH . K 6 HOH B 58 2160 177 HOH HOH . K 6 HOH B 59 2161 179 HOH HOH . K 6 HOH B 60 2162 181 HOH HOH . K 6 HOH B 61 2163 183 HOH HOH . K 6 HOH B 62 2164 185 HOH HOH . K 6 HOH B 63 2165 188 HOH HOH . K 6 HOH B 64 2166 190 HOH HOH . K 6 HOH B 65 2167 192 HOH HOH . K 6 HOH B 66 2168 194 HOH HOH . K 6 HOH B 67 2169 195 HOH HOH . K 6 HOH B 68 2170 197 HOH HOH . K 6 HOH B 69 2171 198 HOH HOH . K 6 HOH B 70 2172 199 HOH HOH . K 6 HOH B 71 2173 200 HOH HOH . K 6 HOH B 72 2174 202 HOH HOH . K 6 HOH B 73 2175 203 HOH HOH . K 6 HOH B 74 2176 207 HOH HOH . K 6 HOH B 75 2177 209 HOH HOH . K 6 HOH B 76 2178 211 HOH HOH . K 6 HOH B 77 2179 214 HOH HOH . K 6 HOH B 78 2180 215 HOH HOH . K 6 HOH B 79 2181 219 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 6.873 _atom_site.Cartn_y 6.178 _atom_site.Cartn_z -0.561 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 28.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #