data_2YR2 # _model_server_result.job_id O048hj302gz2aNqBpMLdzA _model_server_result.datetime_utc '2024-10-19 15:31:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2YR2 # _exptl.entry_id 2YR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.22 _cell.angle_gamma 90 _cell.entry_id 2YR2 _cell.length_a 106.258 _cell.length_b 41.928 _cell.length_c 70.579 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PQS dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1,2 B,C,E 2 1 B,C,E 3 1 A,D 3 3 B,C,E 4 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_454 -x-1,y,-z-1 -1 0 0 0 1 0 0 0 -1 -83.023656 0 -66.645034 3 'crystal symmetry operation' 4_444 -x-1/2,y-1/2,-z-1 -1 0 0 0 1 0 0 0 -1 -29.894656 -20.964 -66.645034 4 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 85 A ASP 85 4_444 C ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc2 A OE1 GLU 87 A GLU 87 4_444 C ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 B OD1 ASP 85 B ASP 85 1_555 C ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc4 B OE1 GLU 87 B GLU 87 1_555 C ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2YR2 _atom_sites.fract_transf_matrix[1][1] 0.009411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003281 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN B 1 1001 1 ZN ZN2 . D 3 HOH A 1 147 1 HOH HOH . D 3 HOH A 2 148 4 HOH HOH . D 3 HOH A 3 149 5 HOH HOH . D 3 HOH A 4 150 9 HOH HOH . D 3 HOH A 5 151 12 HOH HOH . D 3 HOH A 6 152 13 HOH HOH . D 3 HOH A 7 153 14 HOH HOH . D 3 HOH A 8 154 16 HOH HOH . D 3 HOH A 9 155 17 HOH HOH . D 3 HOH A 10 156 18 HOH HOH . D 3 HOH A 11 157 20 HOH HOH . D 3 HOH A 12 158 21 HOH HOH . D 3 HOH A 13 159 22 HOH HOH . D 3 HOH A 14 160 25 HOH HOH . D 3 HOH A 15 161 27 HOH HOH . D 3 HOH A 16 162 28 HOH HOH . D 3 HOH A 17 163 29 HOH HOH . D 3 HOH A 18 164 30 HOH HOH . D 3 HOH A 19 165 31 HOH HOH . D 3 HOH A 20 166 34 HOH HOH . D 3 HOH A 21 167 35 HOH HOH . D 3 HOH A 22 168 36 HOH HOH . D 3 HOH A 23 169 37 HOH HOH . D 3 HOH A 24 170 38 HOH HOH . D 3 HOH A 25 171 40 HOH HOH . D 3 HOH A 26 172 41 HOH HOH . D 3 HOH A 27 173 42 HOH HOH . D 3 HOH A 28 174 43 HOH HOH . D 3 HOH A 29 175 44 HOH HOH . D 3 HOH A 30 176 48 HOH HOH . D 3 HOH A 31 177 49 HOH HOH . D 3 HOH A 32 178 50 HOH HOH . D 3 HOH A 33 179 52 HOH HOH . D 3 HOH A 34 180 58 HOH HOH . D 3 HOH A 35 181 61 HOH HOH . D 3 HOH A 36 182 63 HOH HOH . D 3 HOH A 37 183 64 HOH HOH . D 3 HOH A 38 184 65 HOH HOH . D 3 HOH A 39 185 67 HOH HOH . D 3 HOH A 40 186 68 HOH HOH . D 3 HOH A 41 187 69 HOH HOH . D 3 HOH A 42 188 70 HOH HOH . D 3 HOH A 43 189 72 HOH HOH . D 3 HOH A 44 190 73 HOH HOH . D 3 HOH A 45 191 74 HOH HOH . D 3 HOH A 46 192 76 HOH HOH . D 3 HOH A 47 193 78 HOH HOH . D 3 HOH A 48 194 79 HOH HOH . D 3 HOH A 49 195 82 HOH HOH . D 3 HOH A 50 196 89 HOH HOH . D 3 HOH A 51 197 90 HOH HOH . D 3 HOH A 52 198 91 HOH HOH . D 3 HOH A 53 199 92 HOH HOH . D 3 HOH A 54 200 94 HOH HOH . D 3 HOH A 55 201 95 HOH HOH . D 3 HOH A 56 202 96 HOH HOH . D 3 HOH A 57 203 97 HOH HOH . D 3 HOH A 58 204 109 HOH HOH . D 3 HOH A 59 205 110 HOH HOH . D 3 HOH A 60 206 111 HOH HOH . D 3 HOH A 61 207 115 HOH HOH . D 3 HOH A 62 208 117 HOH HOH . D 3 HOH A 63 209 121 HOH HOH . D 3 HOH A 64 210 122 HOH HOH . D 3 HOH A 65 211 123 HOH HOH . D 3 HOH A 66 212 124 HOH HOH . D 3 HOH A 67 213 125 HOH HOH . D 3 HOH A 68 214 126 HOH HOH . D 3 HOH A 69 215 128 HOH HOH . D 3 HOH A 70 216 130 HOH HOH . D 3 HOH A 71 217 131 HOH HOH . D 3 HOH A 72 218 132 HOH HOH . D 3 HOH A 73 219 134 HOH HOH . D 3 HOH A 74 220 136 HOH HOH . D 3 HOH A 75 221 138 HOH HOH . D 3 HOH A 76 222 139 HOH HOH . D 3 HOH A 77 223 142 HOH HOH . D 3 HOH A 78 224 143 HOH HOH . D 3 HOH A 79 225 145 HOH HOH . D 3 HOH A 80 226 147 HOH HOH . D 3 HOH A 81 227 148 HOH HOH . D 3 HOH A 82 228 149 HOH HOH . D 3 HOH A 83 229 153 HOH HOH . D 3 HOH A 84 230 154 HOH HOH . D 3 HOH A 85 231 156 HOH HOH . D 3 HOH A 86 232 157 HOH HOH . D 3 HOH A 87 233 158 HOH HOH . D 3 HOH A 88 234 160 HOH HOH . D 3 HOH A 89 235 162 HOH HOH . D 3 HOH A 90 236 164 HOH HOH . D 3 HOH A 91 237 166 HOH HOH . D 3 HOH A 92 238 167 HOH HOH . D 3 HOH A 93 239 169 HOH HOH . D 3 HOH A 94 240 170 HOH HOH . D 3 HOH A 95 241 171 HOH HOH . D 3 HOH A 96 242 172 HOH HOH . D 3 HOH A 97 243 174 HOH HOH . D 3 HOH A 98 244 175 HOH HOH . D 3 HOH A 99 245 176 HOH HOH . D 3 HOH A 100 246 177 HOH HOH . D 3 HOH A 101 247 181 HOH HOH . D 3 HOH A 102 248 183 HOH HOH . D 3 HOH A 103 249 184 HOH HOH . D 3 HOH A 104 250 186 HOH HOH . D 3 HOH A 105 251 187 HOH HOH . D 3 HOH A 106 252 188 HOH HOH . D 3 HOH A 107 253 189 HOH HOH . D 3 HOH A 108 254 190 HOH HOH . D 3 HOH A 109 255 191 HOH HOH . D 3 HOH A 110 256 192 HOH HOH . D 3 HOH A 111 257 196 HOH HOH . D 3 HOH A 112 258 205 HOH HOH . D 3 HOH A 113 259 206 HOH HOH . D 3 HOH A 114 260 207 HOH HOH . D 3 HOH A 115 261 211 HOH HOH . D 3 HOH A 116 262 214 HOH HOH . D 3 HOH A 117 263 215 HOH HOH . D 3 HOH A 118 264 216 HOH HOH . D 3 HOH A 119 265 217 HOH HOH . D 3 HOH A 120 266 218 HOH HOH . D 3 HOH A 121 267 220 HOH HOH . D 3 HOH A 122 268 221 HOH HOH . D 3 HOH A 123 269 222 HOH HOH . D 3 HOH A 124 270 223 HOH HOH . D 3 HOH A 125 271 226 HOH HOH . D 3 HOH A 126 272 227 HOH HOH . D 3 HOH A 127 273 231 HOH HOH . D 3 HOH A 128 274 236 HOH HOH . D 3 HOH A 129 275 237 HOH HOH . D 3 HOH A 130 276 238 HOH HOH . D 3 HOH A 131 277 241 HOH HOH . D 3 HOH A 132 278 242 HOH HOH . D 3 HOH A 133 279 243 HOH HOH . D 3 HOH A 134 280 245 HOH HOH . D 3 HOH A 135 281 248 HOH HOH . D 3 HOH A 136 282 249 HOH HOH . D 3 HOH A 137 283 250 HOH HOH . D 3 HOH A 138 284 251 HOH HOH . D 3 HOH A 139 285 252 HOH HOH . D 3 HOH A 140 286 253 HOH HOH . D 3 HOH A 141 287 258 HOH HOH . D 3 HOH A 142 288 259 HOH HOH . D 3 HOH A 143 289 260 HOH HOH . D 3 HOH A 144 290 261 HOH HOH . D 3 HOH A 145 291 262 HOH HOH . D 3 HOH A 146 292 264 HOH HOH . D 3 HOH A 147 293 265 HOH HOH . D 3 HOH A 148 294 270 HOH HOH . D 3 HOH A 149 295 271 HOH HOH . D 3 HOH A 150 296 272 HOH HOH . D 3 HOH A 151 297 274 HOH HOH . D 3 HOH A 152 298 279 HOH HOH . D 3 HOH A 153 299 280 HOH HOH . D 3 HOH A 154 300 281 HOH HOH . D 3 HOH A 155 301 282 HOH HOH . D 3 HOH A 156 302 283 HOH HOH . E 3 HOH B 1 1002 2 HOH HOH . E 3 HOH B 2 1003 7 HOH HOH . E 3 HOH B 3 1004 11 HOH HOH . E 3 HOH B 4 1005 19 HOH HOH . E 3 HOH B 5 1006 24 HOH HOH . E 3 HOH B 6 1007 26 HOH HOH . E 3 HOH B 7 1008 32 HOH HOH . E 3 HOH B 8 1009 33 HOH HOH . E 3 HOH B 9 1010 39 HOH HOH . E 3 HOH B 10 1011 45 HOH HOH . E 3 HOH B 11 1012 46 HOH HOH . E 3 HOH B 12 1013 47 HOH HOH . E 3 HOH B 13 1014 51 HOH HOH . E 3 HOH B 14 1015 53 HOH HOH . E 3 HOH B 15 1016 54 HOH HOH . E 3 HOH B 16 1017 55 HOH HOH . E 3 HOH B 17 1018 56 HOH HOH . E 3 HOH B 18 1019 57 HOH HOH . E 3 HOH B 19 1020 66 HOH HOH . E 3 HOH B 20 1021 71 HOH HOH . E 3 HOH B 21 1022 77 HOH HOH . E 3 HOH B 22 1023 80 HOH HOH . E 3 HOH B 23 1024 81 HOH HOH . E 3 HOH B 24 1025 83 HOH HOH . E 3 HOH B 25 1026 86 HOH HOH . E 3 HOH B 26 1027 88 HOH HOH . E 3 HOH B 27 1028 93 HOH HOH . E 3 HOH B 28 1029 98 HOH HOH . E 3 HOH B 29 1030 101 HOH HOH . E 3 HOH B 30 1031 103 HOH HOH . E 3 HOH B 31 1032 104 HOH HOH . E 3 HOH B 32 1033 105 HOH HOH . E 3 HOH B 33 1034 106 HOH HOH . E 3 HOH B 34 1035 107 HOH HOH . E 3 HOH B 35 1036 108 HOH HOH . E 3 HOH B 36 1037 113 HOH HOH . E 3 HOH B 37 1038 118 HOH HOH . E 3 HOH B 38 1039 120 HOH HOH . E 3 HOH B 39 1040 127 HOH HOH . E 3 HOH B 40 1041 129 HOH HOH . E 3 HOH B 41 1042 133 HOH HOH . E 3 HOH B 42 1043 135 HOH HOH . E 3 HOH B 43 1044 137 HOH HOH . E 3 HOH B 44 1045 140 HOH HOH . E 3 HOH B 45 1046 141 HOH HOH . E 3 HOH B 46 1047 144 HOH HOH . E 3 HOH B 47 1048 146 HOH HOH . E 3 HOH B 48 1049 150 HOH HOH . E 3 HOH B 49 1050 151 HOH HOH . E 3 HOH B 50 1051 152 HOH HOH . E 3 HOH B 51 1052 155 HOH HOH . E 3 HOH B 52 1053 159 HOH HOH . E 3 HOH B 53 1054 161 HOH HOH . E 3 HOH B 54 1055 165 HOH HOH . E 3 HOH B 55 1056 168 HOH HOH . E 3 HOH B 56 1057 173 HOH HOH . E 3 HOH B 57 1058 178 HOH HOH . E 3 HOH B 58 1059 180 HOH HOH . E 3 HOH B 59 1060 182 HOH HOH . E 3 HOH B 60 1061 185 HOH HOH . E 3 HOH B 61 1062 193 HOH HOH . E 3 HOH B 62 1063 194 HOH HOH . E 3 HOH B 63 1064 195 HOH HOH . E 3 HOH B 64 1065 197 HOH HOH . E 3 HOH B 65 1066 198 HOH HOH . E 3 HOH B 66 1067 199 HOH HOH . E 3 HOH B 67 1068 200 HOH HOH . E 3 HOH B 68 1069 201 HOH HOH . E 3 HOH B 69 1070 202 HOH HOH . E 3 HOH B 70 1071 203 HOH HOH . E 3 HOH B 71 1072 204 HOH HOH . E 3 HOH B 72 1073 208 HOH HOH . E 3 HOH B 73 1074 209 HOH HOH . E 3 HOH B 74 1075 210 HOH HOH . E 3 HOH B 75 1076 212 HOH HOH . E 3 HOH B 76 1077 213 HOH HOH . E 3 HOH B 77 1078 219 HOH HOH . E 3 HOH B 78 1079 224 HOH HOH . E 3 HOH B 79 1080 225 HOH HOH . E 3 HOH B 80 1081 228 HOH HOH . E 3 HOH B 81 1082 229 HOH HOH . E 3 HOH B 82 1083 230 HOH HOH . E 3 HOH B 83 1084 232 HOH HOH . E 3 HOH B 84 1085 233 HOH HOH . E 3 HOH B 85 1086 234 HOH HOH . E 3 HOH B 86 1087 235 HOH HOH . E 3 HOH B 87 1088 239 HOH HOH . E 3 HOH B 88 1089 240 HOH HOH . E 3 HOH B 89 1090 244 HOH HOH . E 3 HOH B 90 1091 246 HOH HOH . E 3 HOH B 91 1092 247 HOH HOH . E 3 HOH B 92 1093 254 HOH HOH . E 3 HOH B 93 1094 255 HOH HOH . E 3 HOH B 94 1095 256 HOH HOH . E 3 HOH B 95 1096 257 HOH HOH . E 3 HOH B 96 1097 263 HOH HOH . E 3 HOH B 97 1098 266 HOH HOH . E 3 HOH B 98 1099 267 HOH HOH . E 3 HOH B 99 1100 268 HOH HOH . E 3 HOH B 100 1101 269 HOH HOH . E 3 HOH B 101 1102 273 HOH HOH . E 3 HOH B 102 1103 275 HOH HOH . E 3 HOH B 103 1104 276 HOH HOH . E 3 HOH B 104 1105 277 HOH HOH . E 3 HOH B 105 1106 278 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -17.209 _atom_site.Cartn_y -15.319 _atom_site.Cartn_z -24.614 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #