data_2YRF
#
_model_server_result.job_id            4hDwMcphXWgux133YwLKRQ 
_model_server_result.datetime_utc      '2024-12-21 14:57:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yrf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    2YRF 
#
_exptl.entry_id    2YRF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YRF 
_cell.length_a            69.273 
_cell.length_b            69.273 
_cell.length_c            154.436 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YRF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             304 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              283 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             304 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              283 
_struct_conn.ptnr2_symmetry                 4_564 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.933 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 290 n n 
S O2 SO4 doub 291 n n 
S O3 SO4 sing 292 n n 
S O4 SO4 sing 293 n n 
#
_atom_sites.entry_id                     2YRF 
_atom_sites.fract_transf_matrix[1][1]    0.014436 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014436 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006475 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 501 1 SO4 SO4 . 
D 2 SO4 B 1 502 2 SO4 SO4 . 
E 3 HOH A 1 502 1 HOH HOH . 
E 3 HOH A 2 503 2 HOH HOH . 
E 3 HOH A 3 504 9 HOH HOH . 
E 3 HOH A 4 505 10 HOH HOH . 
E 3 HOH A 5 506 13 HOH HOH . 
E 3 HOH A 6 507 14 HOH HOH . 
E 3 HOH A 7 508 16 HOH HOH . 
E 3 HOH A 8 509 18 HOH HOH . 
E 3 HOH A 9 510 19 HOH HOH . 
E 3 HOH A 10 511 22 HOH HOH . 
E 3 HOH A 11 512 23 HOH HOH . 
E 3 HOH A 12 513 25 HOH HOH . 
E 3 HOH A 13 514 26 HOH HOH . 
E 3 HOH A 14 515 28 HOH HOH . 
E 3 HOH A 15 516 29 HOH HOH . 
E 3 HOH A 16 517 31 HOH HOH . 
E 3 HOH A 17 518 33 HOH HOH . 
E 3 HOH A 18 519 34 HOH HOH . 
E 3 HOH A 19 520 35 HOH HOH . 
E 3 HOH A 20 521 36 HOH HOH . 
E 3 HOH A 21 522 37 HOH HOH . 
E 3 HOH A 22 523 39 HOH HOH . 
E 3 HOH A 23 524 40 HOH HOH . 
E 3 HOH A 24 525 41 HOH HOH . 
E 3 HOH A 25 526 42 HOH HOH . 
E 3 HOH A 26 527 43 HOH HOH . 
E 3 HOH A 27 528 55 HOH HOH . 
E 3 HOH A 28 529 56 HOH HOH . 
E 3 HOH A 29 530 58 HOH HOH . 
E 3 HOH A 30 531 59 HOH HOH . 
E 3 HOH A 31 532 61 HOH HOH . 
E 3 HOH A 32 533 62 HOH HOH . 
E 3 HOH A 33 534 64 HOH HOH . 
E 3 HOH A 34 535 65 HOH HOH . 
E 3 HOH A 35 536 66 HOH HOH . 
E 3 HOH A 36 537 67 HOH HOH . 
E 3 HOH A 37 538 68 HOH HOH . 
E 3 HOH A 38 539 70 HOH HOH . 
E 3 HOH A 39 540 71 HOH HOH . 
E 3 HOH A 40 541 75 HOH HOH . 
E 3 HOH A 41 542 78 HOH HOH . 
E 3 HOH A 42 543 81 HOH HOH . 
E 3 HOH A 43 544 82 HOH HOH . 
E 3 HOH A 44 545 85 HOH HOH . 
E 3 HOH A 45 546 86 HOH HOH . 
E 3 HOH A 46 547 87 HOH HOH . 
E 3 HOH A 47 548 88 HOH HOH . 
E 3 HOH A 48 549 91 HOH HOH . 
E 3 HOH A 49 550 93 HOH HOH . 
E 3 HOH A 50 551 94 HOH HOH . 
E 3 HOH A 51 552 95 HOH HOH . 
E 3 HOH A 52 553 96 HOH HOH . 
F 3 HOH B 1 503 3 HOH HOH . 
F 3 HOH B 2 504 5 HOH HOH . 
F 3 HOH B 3 505 6 HOH HOH . 
F 3 HOH B 4 506 7 HOH HOH . 
F 3 HOH B 5 507 8 HOH HOH . 
F 3 HOH B 6 508 11 HOH HOH . 
F 3 HOH B 7 509 12 HOH HOH . 
F 3 HOH B 8 510 15 HOH HOH . 
F 3 HOH B 9 511 17 HOH HOH . 
F 3 HOH B 10 512 20 HOH HOH . 
F 3 HOH B 11 513 21 HOH HOH . 
F 3 HOH B 12 514 24 HOH HOH . 
F 3 HOH B 13 515 27 HOH HOH . 
F 3 HOH B 14 516 30 HOH HOH . 
F 3 HOH B 15 517 32 HOH HOH . 
F 3 HOH B 16 518 38 HOH HOH . 
F 3 HOH B 17 519 44 HOH HOH . 
F 3 HOH B 18 520 45 HOH HOH . 
F 3 HOH B 19 521 46 HOH HOH . 
F 3 HOH B 20 522 47 HOH HOH . 
F 3 HOH B 21 523 48 HOH HOH . 
F 3 HOH B 22 524 49 HOH HOH . 
F 3 HOH B 23 525 50 HOH HOH . 
F 3 HOH B 24 526 51 HOH HOH . 
F 3 HOH B 25 527 52 HOH HOH . 
F 3 HOH B 26 528 53 HOH HOH . 
F 3 HOH B 27 529 54 HOH HOH . 
F 3 HOH B 28 530 57 HOH HOH . 
F 3 HOH B 29 531 60 HOH HOH . 
F 3 HOH B 30 532 63 HOH HOH . 
F 3 HOH B 31 533 69 HOH HOH . 
F 3 HOH B 32 534 72 HOH HOH . 
F 3 HOH B 33 535 73 HOH HOH . 
F 3 HOH B 34 536 74 HOH HOH . 
F 3 HOH B 35 537 76 HOH HOH . 
F 3 HOH B 36 538 79 HOH HOH . 
F 3 HOH B 37 539 80 HOH HOH . 
F 3 HOH B 38 540 83 HOH HOH . 
F 3 HOH B 39 541 84 HOH HOH . 
F 3 HOH B 40 542 89 HOH HOH . 
F 3 HOH B 41 543 90 HOH HOH . 
F 3 HOH B 42 544 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . D 2 25.691 44.783 16.679 1 31.88 ? S SO4 502 B 1 
HETATM 2 O O1 SO4 . . . D 2 25.789 44.028 15.42 1 33.9 ? O1 SO4 502 B 1 
HETATM 3 O O2 SO4 . . . D 2 26.395 46.063 16.529 1 35.08 ? O2 SO4 502 B 1 
HETATM 4 O O3 SO4 . . . D 2 24.288 45.027 16.999 1 32.89 ? O3 SO4 502 B 1 
HETATM 5 O O4 SO4 . . . D 2 26.291 44.026 17.773 1 32.37 ? O4 SO4 502 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#