data_2YS6
#
_model_server_result.job_id            319K34nJcignxizkwMGP7g 
_model_server_result.datetime_utc      '2024-11-05 00:22:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ys6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":432}' 
#
_entry.id    2YS6 
#
_exptl.entry_id    2YS6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YS6 
_cell.length_a            50.786 
_cell.length_b            83.43 
_cell.length_c            96.536 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YS6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     2YS6 
_atom_sites.fract_transf_matrix[1][1]    0.01969 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011986 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010359 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GLY A 1 431 343 GLY GLY . 
C 3 AMP A 1 432 100 AMP AMP . 
D 4 HOH A 1 433 1 HOH HOH . 
D 4 HOH A 2 434 2 HOH HOH . 
D 4 HOH A 3 435 3 HOH HOH . 
D 4 HOH A 4 436 4 HOH HOH . 
D 4 HOH A 5 437 5 HOH HOH . 
D 4 HOH A 6 438 6 HOH HOH . 
D 4 HOH A 7 439 7 HOH HOH . 
D 4 HOH A 8 440 8 HOH HOH . 
D 4 HOH A 9 441 9 HOH HOH . 
D 4 HOH A 10 442 10 HOH HOH . 
D 4 HOH A 11 443 11 HOH HOH . 
D 4 HOH A 12 444 12 HOH HOH . 
D 4 HOH A 13 445 13 HOH HOH . 
D 4 HOH A 14 446 14 HOH HOH . 
D 4 HOH A 15 447 15 HOH HOH . 
D 4 HOH A 16 448 16 HOH HOH . 
D 4 HOH A 17 449 17 HOH HOH . 
D 4 HOH A 18 450 18 HOH HOH . 
D 4 HOH A 19 451 19 HOH HOH . 
D 4 HOH A 20 452 20 HOH HOH . 
D 4 HOH A 21 453 21 HOH HOH . 
D 4 HOH A 22 454 22 HOH HOH . 
D 4 HOH A 23 455 23 HOH HOH . 
D 4 HOH A 24 456 24 HOH HOH . 
D 4 HOH A 25 457 25 HOH HOH . 
D 4 HOH A 26 458 26 HOH HOH . 
D 4 HOH A 27 459 27 HOH HOH . 
D 4 HOH A 28 460 28 HOH HOH . 
D 4 HOH A 29 461 29 HOH HOH . 
D 4 HOH A 30 462 30 HOH HOH . 
D 4 HOH A 31 463 31 HOH HOH . 
D 4 HOH A 32 464 32 HOH HOH . 
D 4 HOH A 33 465 33 HOH HOH . 
D 4 HOH A 34 466 34 HOH HOH . 
D 4 HOH A 35 467 35 HOH HOH . 
D 4 HOH A 36 468 36 HOH HOH . 
D 4 HOH A 37 469 37 HOH HOH . 
D 4 HOH A 38 470 38 HOH HOH . 
D 4 HOH A 39 471 39 HOH HOH . 
D 4 HOH A 40 472 40 HOH HOH . 
D 4 HOH A 41 473 41 HOH HOH . 
D 4 HOH A 42 474 42 HOH HOH . 
D 4 HOH A 43 475 43 HOH HOH . 
D 4 HOH A 44 476 44 HOH HOH . 
D 4 HOH A 45 477 45 HOH HOH . 
D 4 HOH A 46 478 46 HOH HOH . 
D 4 HOH A 47 479 47 HOH HOH . 
D 4 HOH A 48 480 48 HOH HOH . 
D 4 HOH A 49 481 49 HOH HOH . 
D 4 HOH A 50 482 50 HOH HOH . 
D 4 HOH A 51 483 51 HOH HOH . 
D 4 HOH A 52 484 52 HOH HOH . 
D 4 HOH A 53 485 53 HOH HOH . 
D 4 HOH A 54 486 54 HOH HOH . 
D 4 HOH A 55 487 55 HOH HOH . 
D 4 HOH A 56 488 56 HOH HOH . 
D 4 HOH A 57 489 57 HOH HOH . 
D 4 HOH A 58 490 58 HOH HOH . 
D 4 HOH A 59 491 59 HOH HOH . 
D 4 HOH A 60 492 60 HOH HOH . 
D 4 HOH A 61 493 61 HOH HOH . 
D 4 HOH A 62 494 62 HOH HOH . 
D 4 HOH A 63 495 63 HOH HOH . 
D 4 HOH A 64 496 64 HOH HOH . 
D 4 HOH A 65 497 65 HOH HOH . 
D 4 HOH A 66 498 66 HOH HOH . 
D 4 HOH A 67 499 67 HOH HOH . 
D 4 HOH A 68 500 68 HOH HOH . 
D 4 HOH A 69 501 69 HOH HOH . 
D 4 HOH A 70 502 70 HOH HOH . 
D 4 HOH A 71 503 71 HOH HOH . 
D 4 HOH A 72 504 72 HOH HOH . 
D 4 HOH A 73 505 73 HOH HOH . 
D 4 HOH A 74 506 74 HOH HOH . 
D 4 HOH A 75 507 75 HOH HOH . 
D 4 HOH A 76 508 76 HOH HOH . 
D 4 HOH A 77 509 77 HOH HOH . 
D 4 HOH A 78 510 78 HOH HOH . 
D 4 HOH A 79 511 79 HOH HOH . 
D 4 HOH A 80 512 80 HOH HOH . 
D 4 HOH A 81 513 81 HOH HOH . 
D 4 HOH A 82 514 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . C 3 4.146 -22.864 36.124 1 107.37 ? P AMP 432 A 1 
HETATM 2 O O1P AMP . . . C 3 2.953 -23.256 35.361 1 107.02 ? O1P AMP 432 A 1 
HETATM 3 O O2P AMP . . . C 3 5.402 -23.789 35.701 1 107.22 ? O2P AMP 432 A 1 
HETATM 4 O O3P AMP . . . C 3 3.83 -22.97 37.712 1 106.89 ? O3P AMP 432 A 1 
HETATM 5 O O5' AMP . . . C 3 4.449 -21.321 35.775 1 107 ? O5' AMP 432 A 1 
HETATM 6 C C5' AMP . . . C 3 3.268 -20.542 35.995 1 106.69 ? C5' AMP 432 A 1 
HETATM 7 C C4' AMP . . . C 3 3.7 -19.27 36.731 1 106.5 ? C4' AMP 432 A 1 
HETATM 8 O O4' AMP . . . C 3 3.703 -19.481 38.181 1 106.15 ? O4' AMP 432 A 1 
HETATM 9 C C3' AMP . . . C 3 5.129 -18.839 36.362 1 106.31 ? C3' AMP 432 A 1 
HETATM 10 O O3' AMP . . . C 3 5.162 -18.08 35.143 1 106.6 ? O3' AMP 432 A 1 
HETATM 11 C C2' AMP . . . C 3 5.544 -18.042 37.598 1 106.09 ? C2' AMP 432 A 1 
HETATM 12 O O2' AMP . . . C 3 5.085 -16.692 37.509 1 106.09 ? O2' AMP 432 A 1 
HETATM 13 C C1' AMP . . . C 3 4.885 -18.811 38.757 1 105.78 ? C1' AMP 432 A 1 
HETATM 14 N N9 AMP . . . C 3 5.834 -19.805 39.315 1 105 ? N9 AMP 432 A 1 
HETATM 15 C C8 AMP . . . C 3 5.935 -21.134 38.966 1 104.56 ? C8 AMP 432 A 1 
HETATM 16 N N7 AMP . . . C 3 6.873 -21.713 39.65 1 104.31 ? N7 AMP 432 A 1 
HETATM 17 C C5 AMP . . . C 3 7.443 -20.817 40.481 1 104.35 ? C5 AMP 432 A 1 
HETATM 18 C C6 AMP . . . C 3 8.489 -20.867 41.445 1 104.18 ? C6 AMP 432 A 1 
HETATM 19 N N6 AMP . . . C 3 9.164 -22.045 41.686 1 103.44 ? N6 AMP 432 A 1 
HETATM 20 N N1 AMP . . . C 3 8.804 -19.735 42.119 1 104.16 ? N1 AMP 432 A 1 
HETATM 21 C C2 AMP . . . C 3 8.159 -18.581 41.896 1 104.32 ? C2 AMP 432 A 1 
HETATM 22 N N3 AMP . . . C 3 7.169 -18.493 41.001 1 104.29 ? N3 AMP 432 A 1 
HETATM 23 C C4 AMP . . . C 3 6.784 -19.571 40.281 1 104.54 ? C4 AMP 432 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#