data_2YVM # _model_server_result.job_id aScVKWDc9eBhFW_CgkhYgQ _model_server_result.datetime_utc '2024-10-19 00:48:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 2YVM # _exptl.entry_id 2YVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YVM _cell.length_a 40.763 _cell.length_b 101.176 _cell.length_c 97.492 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 40.763 0 146.238 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2YVM _atom_sites.fract_transf_matrix[1][1] 0.024532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1001 1001 MG MG . C 2 MG A 1 1002 1002 MG MG . D 3 HOH A 1 1003 1 HOH HOH . D 3 HOH A 2 1004 2 HOH HOH . D 3 HOH A 3 1005 3 HOH HOH . D 3 HOH A 4 1006 4 HOH HOH . D 3 HOH A 5 1007 5 HOH HOH . D 3 HOH A 6 1008 6 HOH HOH . D 3 HOH A 7 1009 7 HOH HOH . D 3 HOH A 8 1010 8 HOH HOH . D 3 HOH A 9 1011 9 HOH HOH . D 3 HOH A 10 1012 10 HOH HOH . D 3 HOH A 11 1013 11 HOH HOH . D 3 HOH A 12 1014 12 HOH HOH . D 3 HOH A 13 1015 13 HOH HOH . D 3 HOH A 14 1016 14 HOH HOH . D 3 HOH A 15 1017 15 HOH HOH . D 3 HOH A 16 1018 16 HOH HOH . D 3 HOH A 17 1019 17 HOH HOH . D 3 HOH A 18 1020 18 HOH HOH . D 3 HOH A 19 1021 19 HOH HOH . D 3 HOH A 20 1022 20 HOH HOH . D 3 HOH A 21 1023 21 HOH HOH . D 3 HOH A 22 1024 22 HOH HOH . D 3 HOH A 23 1025 23 HOH HOH . D 3 HOH A 24 1026 24 HOH HOH . D 3 HOH A 25 1027 25 HOH HOH . D 3 HOH A 26 1028 26 HOH HOH . D 3 HOH A 27 1029 27 HOH HOH . D 3 HOH A 28 1030 28 HOH HOH . D 3 HOH A 29 1031 29 HOH HOH . D 3 HOH A 30 1032 30 HOH HOH . D 3 HOH A 31 1033 31 HOH HOH . D 3 HOH A 32 1034 32 HOH HOH . D 3 HOH A 33 1035 33 HOH HOH . D 3 HOH A 34 1036 34 HOH HOH . D 3 HOH A 35 1037 35 HOH HOH . D 3 HOH A 36 1038 36 HOH HOH . D 3 HOH A 37 1039 37 HOH HOH . D 3 HOH A 38 1040 38 HOH HOH . D 3 HOH A 39 1041 39 HOH HOH . D 3 HOH A 40 1042 40 HOH HOH . D 3 HOH A 41 1043 41 HOH HOH . D 3 HOH A 42 1044 42 HOH HOH . D 3 HOH A 43 1045 43 HOH HOH . D 3 HOH A 44 1046 44 HOH HOH . D 3 HOH A 45 1047 45 HOH HOH . D 3 HOH A 46 1048 46 HOH HOH . D 3 HOH A 47 1049 47 HOH HOH . D 3 HOH A 48 1050 48 HOH HOH . D 3 HOH A 49 1051 49 HOH HOH . D 3 HOH A 50 1052 50 HOH HOH . D 3 HOH A 51 1053 51 HOH HOH . D 3 HOH A 52 1054 52 HOH HOH . D 3 HOH A 53 1055 53 HOH HOH . D 3 HOH A 54 1056 54 HOH HOH . D 3 HOH A 55 1057 55 HOH HOH . D 3 HOH A 56 1058 56 HOH HOH . D 3 HOH A 57 1059 57 HOH HOH . D 3 HOH A 58 1060 58 HOH HOH . D 3 HOH A 59 1061 59 HOH HOH . D 3 HOH A 60 1062 60 HOH HOH . D 3 HOH A 61 1063 61 HOH HOH . D 3 HOH A 62 1064 62 HOH HOH . D 3 HOH A 63 1065 63 HOH HOH . D 3 HOH A 64 1066 64 HOH HOH . D 3 HOH A 65 1067 65 HOH HOH . D 3 HOH A 66 1068 66 HOH HOH . D 3 HOH A 67 1069 67 HOH HOH . D 3 HOH A 68 1070 68 HOH HOH . D 3 HOH A 69 1071 69 HOH HOH . D 3 HOH A 70 1072 70 HOH HOH . D 3 HOH A 71 1073 71 HOH HOH . D 3 HOH A 72 1074 72 HOH HOH . D 3 HOH A 73 1075 73 HOH HOH . D 3 HOH A 74 1076 74 HOH HOH . D 3 HOH A 75 1077 75 HOH HOH . D 3 HOH A 76 1078 76 HOH HOH . D 3 HOH A 77 1079 77 HOH HOH . D 3 HOH A 78 1080 78 HOH HOH . D 3 HOH A 79 1081 79 HOH HOH . D 3 HOH A 80 1082 80 HOH HOH . D 3 HOH A 81 1083 81 HOH HOH . D 3 HOH A 82 1084 82 HOH HOH . D 3 HOH A 83 1085 83 HOH HOH . D 3 HOH A 84 1086 84 HOH HOH . D 3 HOH A 85 1087 85 HOH HOH . D 3 HOH A 86 1088 86 HOH HOH . D 3 HOH A 87 1089 87 HOH HOH . D 3 HOH A 88 1090 88 HOH HOH . D 3 HOH A 89 1091 89 HOH HOH . D 3 HOH A 90 1092 90 HOH HOH . D 3 HOH A 91 1093 91 HOH HOH . D 3 HOH A 92 1094 92 HOH HOH . D 3 HOH A 93 1095 93 HOH HOH . D 3 HOH A 94 1096 94 HOH HOH . D 3 HOH A 95 1097 95 HOH HOH . D 3 HOH A 96 1098 96 HOH HOH . D 3 HOH A 97 1099 97 HOH HOH . D 3 HOH A 98 1100 98 HOH HOH . D 3 HOH A 99 1101 99 HOH HOH . D 3 HOH A 100 1102 100 HOH HOH . D 3 HOH A 101 1103 101 HOH HOH . D 3 HOH A 102 1104 102 HOH HOH . D 3 HOH A 103 1105 103 HOH HOH . D 3 HOH A 104 1106 104 HOH HOH . D 3 HOH A 105 1107 105 HOH HOH . D 3 HOH A 106 1108 106 HOH HOH . D 3 HOH A 107 1109 107 HOH HOH . D 3 HOH A 108 1110 108 HOH HOH . D 3 HOH A 109 1111 109 HOH HOH . D 3 HOH A 110 1112 110 HOH HOH . D 3 HOH A 111 1113 111 HOH HOH . D 3 HOH A 112 1114 112 HOH HOH . D 3 HOH A 113 1115 113 HOH HOH . D 3 HOH A 114 1116 114 HOH HOH . D 3 HOH A 115 1117 115 HOH HOH . D 3 HOH A 116 1118 116 HOH HOH . D 3 HOH A 117 1119 117 HOH HOH . D 3 HOH A 118 1120 118 HOH HOH . D 3 HOH A 119 1121 119 HOH HOH . D 3 HOH A 120 1122 120 HOH HOH . D 3 HOH A 121 1123 121 HOH HOH . D 3 HOH A 122 1124 122 HOH HOH . D 3 HOH A 123 1125 123 HOH HOH . D 3 HOH A 124 1126 124 HOH HOH . D 3 HOH A 125 1127 125 HOH HOH . D 3 HOH A 126 1128 126 HOH HOH . D 3 HOH A 127 1129 127 HOH HOH . D 3 HOH A 128 1130 128 HOH HOH . D 3 HOH A 129 1131 129 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 12.626 _atom_site.Cartn_y 28.596 _atom_site.Cartn_z 60.927 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #