data_2YVO
#
_model_server_result.job_id            3wo5kzCEk4-TaJ07olgb0g 
_model_server_result.datetime_utc      '2024-10-18 23:31:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yvo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    2YVO 
#
_exptl.entry_id    2YVO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YVO 
_cell.length_a            40.699 
_cell.length_b            100.899 
_cell.length_c            97.172 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YVO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 40.699 0 145.758 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2YVO 
_atom_sites.fract_transf_matrix[1][1]    0.024571 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009911 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010291 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 1001 1001 MG MG . 
C 2 MG A 1 1002 1002 MG MG . 
D 2 MG A 1 1003 1003 MG MG . 
E 3 AMP A 1 2001 2001 AMP AMP . 
F 4 HOH A 1 2002 1 HOH HOH . 
F 4 HOH A 2 2003 2 HOH HOH . 
F 4 HOH A 3 2004 3 HOH HOH . 
F 4 HOH A 4 2005 4 HOH HOH . 
F 4 HOH A 5 2006 5 HOH HOH . 
F 4 HOH A 6 2007 6 HOH HOH . 
F 4 HOH A 7 2008 7 HOH HOH . 
F 4 HOH A 8 2009 8 HOH HOH . 
F 4 HOH A 9 2010 9 HOH HOH . 
F 4 HOH A 10 2011 10 HOH HOH . 
F 4 HOH A 11 2012 11 HOH HOH . 
F 4 HOH A 12 2013 12 HOH HOH . 
F 4 HOH A 13 2014 13 HOH HOH . 
F 4 HOH A 14 2015 14 HOH HOH . 
F 4 HOH A 15 2016 15 HOH HOH . 
F 4 HOH A 16 2017 16 HOH HOH . 
F 4 HOH A 17 2018 17 HOH HOH . 
F 4 HOH A 18 2019 18 HOH HOH . 
F 4 HOH A 19 2020 19 HOH HOH . 
F 4 HOH A 20 2021 20 HOH HOH . 
F 4 HOH A 21 2022 21 HOH HOH . 
F 4 HOH A 22 2023 22 HOH HOH . 
F 4 HOH A 23 2024 23 HOH HOH . 
F 4 HOH A 24 2025 24 HOH HOH . 
F 4 HOH A 25 2026 25 HOH HOH . 
F 4 HOH A 26 2027 26 HOH HOH . 
F 4 HOH A 27 2028 27 HOH HOH . 
F 4 HOH A 28 2029 28 HOH HOH . 
F 4 HOH A 29 2030 29 HOH HOH . 
F 4 HOH A 30 2031 30 HOH HOH . 
F 4 HOH A 31 2032 31 HOH HOH . 
F 4 HOH A 32 2033 32 HOH HOH . 
F 4 HOH A 33 2034 33 HOH HOH . 
F 4 HOH A 34 2035 34 HOH HOH . 
F 4 HOH A 35 2036 35 HOH HOH . 
F 4 HOH A 36 2037 36 HOH HOH . 
F 4 HOH A 37 2038 37 HOH HOH . 
F 4 HOH A 38 2039 38 HOH HOH . 
F 4 HOH A 39 2040 39 HOH HOH . 
F 4 HOH A 40 2041 40 HOH HOH . 
F 4 HOH A 41 2042 41 HOH HOH . 
F 4 HOH A 42 2043 42 HOH HOH . 
F 4 HOH A 43 2044 43 HOH HOH . 
F 4 HOH A 44 2045 44 HOH HOH . 
F 4 HOH A 45 2046 45 HOH HOH . 
F 4 HOH A 46 2047 46 HOH HOH . 
F 4 HOH A 47 2048 47 HOH HOH . 
F 4 HOH A 48 2049 48 HOH HOH . 
F 4 HOH A 49 2050 49 HOH HOH . 
F 4 HOH A 50 2051 50 HOH HOH . 
F 4 HOH A 51 2052 51 HOH HOH . 
F 4 HOH A 52 2053 52 HOH HOH . 
F 4 HOH A 53 2054 53 HOH HOH . 
F 4 HOH A 54 2055 54 HOH HOH . 
F 4 HOH A 55 2056 55 HOH HOH . 
F 4 HOH A 56 2057 56 HOH HOH . 
F 4 HOH A 57 2058 57 HOH HOH . 
F 4 HOH A 58 2059 58 HOH HOH . 
F 4 HOH A 59 2060 59 HOH HOH . 
F 4 HOH A 60 2061 60 HOH HOH . 
F 4 HOH A 61 2062 61 HOH HOH . 
F 4 HOH A 62 2063 62 HOH HOH . 
F 4 HOH A 63 2064 63 HOH HOH . 
F 4 HOH A 64 2065 64 HOH HOH . 
F 4 HOH A 65 2066 65 HOH HOH . 
F 4 HOH A 66 2067 66 HOH HOH . 
F 4 HOH A 67 2068 67 HOH HOH . 
F 4 HOH A 68 2069 68 HOH HOH . 
F 4 HOH A 69 2070 69 HOH HOH . 
F 4 HOH A 70 2071 70 HOH HOH . 
F 4 HOH A 71 2072 71 HOH HOH . 
F 4 HOH A 72 2073 72 HOH HOH . 
F 4 HOH A 73 2074 73 HOH HOH . 
F 4 HOH A 74 2075 74 HOH HOH . 
F 4 HOH A 75 2076 75 HOH HOH . 
F 4 HOH A 76 2077 76 HOH HOH . 
F 4 HOH A 77 2078 77 HOH HOH . 
F 4 HOH A 78 2079 78 HOH HOH . 
F 4 HOH A 79 2080 79 HOH HOH . 
F 4 HOH A 80 2081 80 HOH HOH . 
F 4 HOH A 81 2082 81 HOH HOH . 
F 4 HOH A 82 2083 82 HOH HOH . 
F 4 HOH A 83 2084 83 HOH HOH . 
F 4 HOH A 84 2085 84 HOH HOH . 
F 4 HOH A 85 2086 85 HOH HOH . 
F 4 HOH A 86 2087 86 HOH HOH . 
F 4 HOH A 87 2088 87 HOH HOH . 
F 4 HOH A 88 2089 88 HOH HOH . 
F 4 HOH A 89 2090 89 HOH HOH . 
F 4 HOH A 90 2091 90 HOH HOH . 
F 4 HOH A 91 2092 91 HOH HOH . 
F 4 HOH A 92 2093 92 HOH HOH . 
F 4 HOH A 93 2094 93 HOH HOH . 
F 4 HOH A 94 2095 94 HOH HOH . 
F 4 HOH A 95 2096 95 HOH HOH . 
F 4 HOH A 96 2097 96 HOH HOH . 
F 4 HOH A 97 2098 97 HOH HOH . 
F 4 HOH A 98 2099 98 HOH HOH . 
F 4 HOH A 99 2100 99 HOH HOH . 
F 4 HOH A 100 2101 100 HOH HOH . 
F 4 HOH A 101 2102 101 HOH HOH . 
F 4 HOH A 102 2103 102 HOH HOH . 
F 4 HOH A 103 2104 103 HOH HOH . 
F 4 HOH A 104 2105 104 HOH HOH . 
F 4 HOH A 105 2106 105 HOH HOH . 
F 4 HOH A 106 2107 106 HOH HOH . 
F 4 HOH A 107 2108 107 HOH HOH . 
F 4 HOH A 108 2109 108 HOH HOH . 
F 4 HOH A 109 2110 109 HOH HOH . 
F 4 HOH A 110 2111 110 HOH HOH . 
F 4 HOH A 111 2112 111 HOH HOH . 
F 4 HOH A 112 2113 112 HOH HOH . 
F 4 HOH A 113 2114 113 HOH HOH . 
F 4 HOH A 114 2115 114 HOH HOH . 
F 4 HOH A 115 2116 115 HOH HOH . 
F 4 HOH A 116 2117 116 HOH HOH . 
F 4 HOH A 117 2118 117 HOH HOH . 
F 4 HOH A 118 2119 118 HOH HOH . 
F 4 HOH A 119 2120 119 HOH HOH . 
F 4 HOH A 120 2121 120 HOH HOH . 
F 4 HOH A 121 2122 121 HOH HOH . 
F 4 HOH A 122 2123 122 HOH HOH . 
F 4 HOH A 123 2124 123 HOH HOH . 
F 4 HOH A 124 2125 124 HOH HOH . 
F 4 HOH A 125 2126 125 HOH HOH . 
F 4 HOH A 126 2127 126 HOH HOH . 
F 4 HOH A 127 2128 127 HOH HOH . 
F 4 HOH A 128 2129 128 HOH HOH . 
F 4 HOH A 129 2130 129 HOH HOH . 
F 4 HOH A 130 2131 130 HOH HOH . 
F 4 HOH A 131 2132 131 HOH HOH . 
F 4 HOH A 132 2133 132 HOH HOH . 
F 4 HOH A 133 2134 133 HOH HOH . 
F 4 HOH A 134 2135 134 HOH HOH . 
F 4 HOH A 135 2136 135 HOH HOH . 
F 4 HOH A 136 2137 136 HOH HOH . 
F 4 HOH A 137 2138 137 HOH HOH . 
F 4 HOH A 138 2139 138 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               10.352 
_atom_site.Cartn_y               29.913 
_atom_site.Cartn_z               59.241 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        8.44 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#