data_2YVP # _model_server_result.job_id T5A9Ld9aYLCHBXph2S_tyQ _model_server_result.datetime_utc '2024-11-01 17:22:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":183}' # _entry.id 2YVP # _exptl.entry_id 2YVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YVP _cell.length_a 40.679 _cell.length_b 100.748 _cell.length_c 97.369 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 40.679 0 146.0535 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 74 A ALA 74 1_555 C MG MG . A MG 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc2 A OE2 GLU 90 A GLU 90 1_555 B MG MG . A MG 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 A OE1 GLU 90 A GLU 90 1_555 D MG MG . A MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc4 A OE2 GLU 94 A GLU 94 1_555 B MG MG . A MG 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc5 A OE2 GLU 94 A GLU 94 1_555 C MG MG . A MG 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc6 A OE2 GLU 139 A GLU 139 1_555 B MG MG . A MG 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc7 B MG MG . A MG 183 1_555 E O1A RBY . A RBY 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc8 B MG MG . A MG 183 1_555 F O HOH . A HOH 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc9 B MG MG . A MG 183 1_555 F O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc10 C MG MG . A MG 184 1_555 E O2B RBY . A RBY 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc11 C MG MG . A MG 184 1_555 E O1A RBY . A RBY 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc12 C MG MG . A MG 184 1_555 F O HOH . A HOH 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc13 C MG MG . A MG 184 1_555 F O HOH . A HOH 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc14 D MG MG . A MG 185 1_555 F O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc15 D MG MG . A MG 185 1_555 F O HOH . A HOH 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc16 D MG MG . A MG 185 1_555 F O HOH . A HOH 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2YVP _atom_sites.fract_transf_matrix[1][1] 0.024583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 183 1 MG MG2 . C 2 MG A 1 184 2 MG MG2 . D 2 MG A 1 185 3 MG MG2 . E 3 RBY A 1 186 1 RBY APR . F 4 HOH A 1 187 1 HOH TIP . F 4 HOH A 2 188 2 HOH TIP . F 4 HOH A 3 189 3 HOH TIP . F 4 HOH A 4 190 4 HOH TIP . F 4 HOH A 5 191 5 HOH TIP . F 4 HOH A 6 192 6 HOH TIP . F 4 HOH A 7 193 7 HOH TIP . F 4 HOH A 8 194 8 HOH TIP . F 4 HOH A 9 195 9 HOH TIP . F 4 HOH A 10 196 10 HOH TIP . F 4 HOH A 11 197 11 HOH TIP . F 4 HOH A 12 198 12 HOH TIP . F 4 HOH A 13 199 13 HOH TIP . F 4 HOH A 14 200 14 HOH TIP . F 4 HOH A 15 201 15 HOH TIP . F 4 HOH A 16 202 16 HOH TIP . F 4 HOH A 17 203 17 HOH TIP . F 4 HOH A 18 204 18 HOH TIP . F 4 HOH A 19 205 19 HOH TIP . F 4 HOH A 20 206 20 HOH TIP . F 4 HOH A 21 207 21 HOH TIP . F 4 HOH A 22 208 22 HOH TIP . F 4 HOH A 23 209 23 HOH TIP . F 4 HOH A 24 210 24 HOH TIP . F 4 HOH A 25 211 25 HOH TIP . F 4 HOH A 26 212 26 HOH TIP . F 4 HOH A 27 213 27 HOH TIP . F 4 HOH A 28 214 28 HOH TIP . F 4 HOH A 29 215 29 HOH TIP . F 4 HOH A 30 216 30 HOH TIP . F 4 HOH A 31 217 31 HOH TIP . F 4 HOH A 32 218 32 HOH TIP . F 4 HOH A 33 219 33 HOH TIP . F 4 HOH A 34 220 34 HOH TIP . F 4 HOH A 35 221 35 HOH TIP . F 4 HOH A 36 222 36 HOH TIP . F 4 HOH A 37 223 37 HOH TIP . F 4 HOH A 38 224 38 HOH TIP . F 4 HOH A 39 225 39 HOH TIP . F 4 HOH A 40 226 40 HOH TIP . F 4 HOH A 41 227 41 HOH TIP . F 4 HOH A 42 228 42 HOH TIP . F 4 HOH A 43 229 43 HOH TIP . F 4 HOH A 44 230 44 HOH TIP . F 4 HOH A 45 231 45 HOH TIP . F 4 HOH A 46 232 46 HOH TIP . F 4 HOH A 47 233 47 HOH TIP . F 4 HOH A 48 234 48 HOH TIP . F 4 HOH A 49 235 49 HOH TIP . F 4 HOH A 50 236 50 HOH TIP . F 4 HOH A 51 237 51 HOH TIP . F 4 HOH A 52 238 52 HOH TIP . F 4 HOH A 53 239 53 HOH TIP . F 4 HOH A 54 240 54 HOH TIP . F 4 HOH A 55 241 55 HOH TIP . F 4 HOH A 56 242 56 HOH TIP . F 4 HOH A 57 243 57 HOH TIP . F 4 HOH A 58 244 58 HOH TIP . F 4 HOH A 59 245 59 HOH TIP . F 4 HOH A 60 246 60 HOH TIP . F 4 HOH A 61 247 61 HOH TIP . F 4 HOH A 62 248 62 HOH TIP . F 4 HOH A 63 249 63 HOH TIP . F 4 HOH A 64 250 64 HOH TIP . F 4 HOH A 65 251 65 HOH TIP . F 4 HOH A 66 252 66 HOH TIP . F 4 HOH A 67 253 67 HOH TIP . F 4 HOH A 68 254 68 HOH TIP . F 4 HOH A 69 255 69 HOH TIP . F 4 HOH A 70 256 70 HOH TIP . F 4 HOH A 71 257 71 HOH TIP . F 4 HOH A 72 258 72 HOH TIP . F 4 HOH A 73 259 73 HOH TIP . F 4 HOH A 74 260 74 HOH TIP . F 4 HOH A 75 261 75 HOH TIP . F 4 HOH A 76 262 76 HOH TIP . F 4 HOH A 77 263 77 HOH TIP . F 4 HOH A 78 264 78 HOH TIP . F 4 HOH A 79 265 79 HOH TIP . F 4 HOH A 80 266 80 HOH TIP . F 4 HOH A 81 267 81 HOH TIP . F 4 HOH A 82 268 82 HOH TIP . F 4 HOH A 83 269 83 HOH TIP . F 4 HOH A 84 270 84 HOH TIP . F 4 HOH A 85 271 85 HOH TIP . F 4 HOH A 86 272 86 HOH TIP . F 4 HOH A 87 273 87 HOH TIP . F 4 HOH A 88 274 88 HOH TIP . F 4 HOH A 89 275 89 HOH TIP . F 4 HOH A 90 276 90 HOH TIP . F 4 HOH A 91 277 91 HOH TIP . F 4 HOH A 92 278 92 HOH TIP . F 4 HOH A 93 279 93 HOH TIP . F 4 HOH A 94 280 94 HOH TIP . F 4 HOH A 95 281 95 HOH TIP . F 4 HOH A 96 282 96 HOH TIP . F 4 HOH A 97 283 97 HOH TIP . F 4 HOH A 98 284 98 HOH TIP . F 4 HOH A 99 285 99 HOH TIP . F 4 HOH A 100 286 100 HOH TIP . F 4 HOH A 101 287 101 HOH TIP . F 4 HOH A 102 288 102 HOH TIP . F 4 HOH A 103 289 103 HOH TIP . F 4 HOH A 104 290 104 HOH TIP . F 4 HOH A 105 291 105 HOH TIP . F 4 HOH A 106 292 106 HOH TIP . F 4 HOH A 107 293 107 HOH TIP . F 4 HOH A 108 294 108 HOH TIP . F 4 HOH A 109 295 109 HOH TIP . F 4 HOH A 110 296 110 HOH TIP . F 4 HOH A 111 297 111 HOH TIP . F 4 HOH A 112 298 112 HOH TIP . F 4 HOH A 113 299 113 HOH TIP . F 4 HOH A 114 300 114 HOH TIP . F 4 HOH A 115 301 115 HOH TIP . F 4 HOH A 116 302 116 HOH TIP . F 4 HOH A 117 303 117 HOH TIP . F 4 HOH A 118 304 118 HOH TIP . F 4 HOH A 119 305 119 HOH TIP . F 4 HOH A 120 306 120 HOH TIP . F 4 HOH A 121 307 121 HOH TIP . F 4 HOH A 122 308 122 HOH TIP . F 4 HOH A 123 309 123 HOH TIP . F 4 HOH A 124 310 124 HOH TIP . F 4 HOH A 125 311 125 HOH TIP . F 4 HOH A 126 312 126 HOH TIP . F 4 HOH A 127 313 127 HOH TIP . F 4 HOH A 128 314 128 HOH TIP . F 4 HOH A 129 315 129 HOH TIP . F 4 HOH A 130 316 130 HOH TIP . F 4 HOH A 131 317 131 HOH TIP . F 4 HOH A 132 318 132 HOH TIP . F 4 HOH A 133 319 133 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.329 _atom_site.Cartn_y 29.851 _atom_site.Cartn_z 59.345 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 183 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #