data_2YVW # _model_server_result.job_id bQbfiqyRlHhUgUcArh7O7A _model_server_result.datetime_utc '2024-11-02 13:37:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":511}' # _entry.id 2YVW # _exptl.entry_id 2YVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2YVW _cell.length_a 132.004 _cell.length_b 132.004 _cell.length_c 58.165 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 335 n n P O2 PO4 sing 336 n n P O3 PO4 sing 337 n n P O4 PO4 sing 338 n n # _atom_sites.entry_id 2YVW _atom_sites.fract_transf_matrix[1][1] 0.007576 _atom_sites.fract_transf_matrix[1][2] 0.004374 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 511 511 PO4 PO4 . C 3 EPU A 1 501 501 EPU EPU . D 4 HOH A 1 601 601 HOH TIP . D 4 HOH A 2 602 602 HOH TIP . D 4 HOH A 3 603 603 HOH TIP . D 4 HOH A 4 604 604 HOH TIP . D 4 HOH A 5 605 605 HOH TIP . D 4 HOH A 6 606 606 HOH TIP . D 4 HOH A 7 607 607 HOH TIP . D 4 HOH A 8 608 608 HOH TIP . D 4 HOH A 9 609 609 HOH TIP . D 4 HOH A 10 610 610 HOH TIP . D 4 HOH A 11 611 611 HOH TIP . D 4 HOH A 12 612 612 HOH TIP . D 4 HOH A 13 613 613 HOH TIP . D 4 HOH A 14 614 614 HOH TIP . D 4 HOH A 15 615 615 HOH TIP . D 4 HOH A 16 616 616 HOH TIP . D 4 HOH A 17 617 617 HOH TIP . D 4 HOH A 18 618 618 HOH TIP . D 4 HOH A 19 619 619 HOH TIP . D 4 HOH A 20 620 620 HOH TIP . D 4 HOH A 21 621 621 HOH TIP . D 4 HOH A 22 622 622 HOH TIP . D 4 HOH A 23 623 623 HOH TIP . D 4 HOH A 24 624 624 HOH TIP . D 4 HOH A 25 625 625 HOH TIP . D 4 HOH A 26 626 626 HOH TIP . D 4 HOH A 27 627 627 HOH TIP . D 4 HOH A 28 628 628 HOH TIP . D 4 HOH A 29 629 629 HOH TIP . D 4 HOH A 30 630 630 HOH TIP . D 4 HOH A 31 631 631 HOH TIP . D 4 HOH A 32 632 632 HOH TIP . D 4 HOH A 33 633 633 HOH TIP . D 4 HOH A 34 634 634 HOH TIP . D 4 HOH A 35 635 635 HOH TIP . D 4 HOH A 36 636 636 HOH TIP . D 4 HOH A 37 637 637 HOH TIP . D 4 HOH A 38 638 638 HOH TIP . D 4 HOH A 39 639 639 HOH TIP . D 4 HOH A 40 640 640 HOH TIP . D 4 HOH A 41 641 641 HOH TIP . D 4 HOH A 42 642 642 HOH TIP . D 4 HOH A 43 643 643 HOH TIP . D 4 HOH A 44 644 644 HOH TIP . D 4 HOH A 45 645 645 HOH TIP . D 4 HOH A 46 646 646 HOH TIP . D 4 HOH A 47 647 647 HOH TIP . D 4 HOH A 48 648 648 HOH TIP . D 4 HOH A 49 649 649 HOH TIP . D 4 HOH A 50 650 650 HOH TIP . D 4 HOH A 51 651 651 HOH TIP . D 4 HOH A 52 652 652 HOH TIP . D 4 HOH A 53 653 653 HOH TIP . D 4 HOH A 54 654 654 HOH TIP . D 4 HOH A 55 655 655 HOH TIP . D 4 HOH A 56 656 656 HOH TIP . D 4 HOH A 57 657 657 HOH TIP . D 4 HOH A 58 658 658 HOH TIP . D 4 HOH A 59 659 659 HOH TIP . D 4 HOH A 60 660 660 HOH TIP . D 4 HOH A 61 661 661 HOH TIP . D 4 HOH A 62 662 662 HOH TIP . D 4 HOH A 63 663 663 HOH TIP . D 4 HOH A 64 664 664 HOH TIP . D 4 HOH A 65 665 665 HOH TIP . D 4 HOH A 66 666 666 HOH TIP . D 4 HOH A 67 667 667 HOH TIP . D 4 HOH A 68 668 668 HOH TIP . D 4 HOH A 69 669 669 HOH TIP . D 4 HOH A 70 670 670 HOH TIP . D 4 HOH A 71 671 671 HOH TIP . D 4 HOH A 72 672 672 HOH TIP . D 4 HOH A 73 673 673 HOH TIP . D 4 HOH A 74 674 674 HOH TIP . D 4 HOH A 75 675 675 HOH TIP . D 4 HOH A 76 676 676 HOH TIP . D 4 HOH A 77 677 677 HOH TIP . D 4 HOH A 78 678 678 HOH TIP . D 4 HOH A 79 679 679 HOH TIP . D 4 HOH A 80 680 680 HOH TIP . D 4 HOH A 81 681 681 HOH TIP . D 4 HOH A 82 682 682 HOH TIP . D 4 HOH A 83 683 683 HOH TIP . D 4 HOH A 84 684 684 HOH TIP . D 4 HOH A 85 685 685 HOH TIP . D 4 HOH A 86 686 686 HOH TIP . D 4 HOH A 87 687 687 HOH TIP . D 4 HOH A 88 688 688 HOH TIP . D 4 HOH A 89 689 689 HOH TIP . D 4 HOH A 90 690 690 HOH TIP . D 4 HOH A 91 691 691 HOH TIP . D 4 HOH A 92 692 692 HOH TIP . D 4 HOH A 93 693 693 HOH TIP . D 4 HOH A 94 694 694 HOH TIP . D 4 HOH A 95 695 695 HOH TIP . D 4 HOH A 96 696 696 HOH TIP . D 4 HOH A 97 697 697 HOH TIP . D 4 HOH A 98 698 698 HOH TIP . D 4 HOH A 99 699 699 HOH TIP . D 4 HOH A 100 700 700 HOH TIP . D 4 HOH A 101 701 701 HOH TIP . D 4 HOH A 102 702 702 HOH TIP . D 4 HOH A 103 703 703 HOH TIP . D 4 HOH A 104 704 704 HOH TIP . D 4 HOH A 105 705 705 HOH TIP . D 4 HOH A 106 706 706 HOH TIP . D 4 HOH A 107 707 707 HOH TIP . D 4 HOH A 108 708 708 HOH TIP . D 4 HOH A 109 709 709 HOH TIP . D 4 HOH A 110 710 710 HOH TIP . D 4 HOH A 111 711 711 HOH TIP . D 4 HOH A 112 712 712 HOH TIP . D 4 HOH A 113 713 713 HOH TIP . D 4 HOH A 114 714 714 HOH TIP . D 4 HOH A 115 715 715 HOH TIP . D 4 HOH A 116 716 716 HOH TIP . D 4 HOH A 117 717 717 HOH TIP . D 4 HOH A 118 718 718 HOH TIP . D 4 HOH A 119 719 719 HOH TIP . D 4 HOH A 120 720 720 HOH TIP . D 4 HOH A 121 721 721 HOH TIP . D 4 HOH A 122 722 722 HOH TIP . D 4 HOH A 123 723 723 HOH TIP . D 4 HOH A 124 724 724 HOH TIP . D 4 HOH A 125 725 725 HOH TIP . D 4 HOH A 126 726 726 HOH TIP . D 4 HOH A 127 727 727 HOH TIP . D 4 HOH A 128 728 728 HOH TIP . D 4 HOH A 129 729 729 HOH TIP . D 4 HOH A 130 730 730 HOH TIP . D 4 HOH A 131 731 731 HOH TIP . D 4 HOH A 132 732 732 HOH TIP . D 4 HOH A 133 733 733 HOH TIP . D 4 HOH A 134 734 734 HOH TIP . D 4 HOH A 135 735 735 HOH TIP . D 4 HOH A 136 736 736 HOH TIP . D 4 HOH A 137 737 737 HOH TIP . D 4 HOH A 138 738 738 HOH TIP . D 4 HOH A 139 739 739 HOH TIP . D 4 HOH A 140 740 740 HOH TIP . D 4 HOH A 141 741 741 HOH TIP . D 4 HOH A 142 742 742 HOH TIP . D 4 HOH A 143 743 743 HOH TIP . D 4 HOH A 144 744 744 HOH TIP . D 4 HOH A 145 745 745 HOH TIP . D 4 HOH A 146 746 746 HOH TIP . D 4 HOH A 147 747 747 HOH TIP . D 4 HOH A 148 748 748 HOH TIP . D 4 HOH A 149 749 749 HOH TIP . D 4 HOH A 150 750 750 HOH TIP . D 4 HOH A 151 751 751 HOH TIP . D 4 HOH A 152 752 752 HOH TIP . D 4 HOH A 153 753 753 HOH TIP . D 4 HOH A 154 754 754 HOH TIP . D 4 HOH A 155 755 755 HOH TIP . D 4 HOH A 156 756 756 HOH TIP . D 4 HOH A 157 757 757 HOH TIP . D 4 HOH A 158 758 758 HOH TIP . D 4 HOH A 159 759 759 HOH TIP . D 4 HOH A 160 760 760 HOH TIP . D 4 HOH A 161 761 761 HOH TIP . D 4 HOH A 162 762 762 HOH TIP . D 4 HOH A 163 763 763 HOH TIP . D 4 HOH A 164 764 764 HOH TIP . D 4 HOH A 165 765 765 HOH TIP . D 4 HOH A 166 766 766 HOH TIP . D 4 HOH A 167 767 767 HOH TIP . D 4 HOH A 168 768 768 HOH TIP . D 4 HOH A 169 769 769 HOH TIP . D 4 HOH A 170 770 770 HOH TIP . D 4 HOH A 171 771 771 HOH TIP . D 4 HOH A 172 772 772 HOH TIP . D 4 HOH A 173 773 773 HOH TIP . D 4 HOH A 174 774 774 HOH TIP . D 4 HOH A 175 775 775 HOH TIP . D 4 HOH A 176 776 776 HOH TIP . D 4 HOH A 177 777 777 HOH TIP . D 4 HOH A 178 778 778 HOH TIP . D 4 HOH A 179 779 779 HOH TIP . D 4 HOH A 180 780 780 HOH TIP . D 4 HOH A 181 781 781 HOH TIP . D 4 HOH A 182 782 782 HOH TIP . D 4 HOH A 183 783 783 HOH TIP . D 4 HOH A 184 784 784 HOH TIP . D 4 HOH A 185 785 785 HOH TIP . D 4 HOH A 186 786 786 HOH TIP . D 4 HOH A 187 787 787 HOH TIP . D 4 HOH A 188 788 788 HOH TIP . D 4 HOH A 189 789 789 HOH TIP . D 4 HOH A 190 790 790 HOH TIP . D 4 HOH A 191 791 791 HOH TIP . D 4 HOH A 192 792 792 HOH TIP . D 4 HOH A 193 793 793 HOH TIP . D 4 HOH A 194 794 794 HOH TIP . D 4 HOH A 195 795 795 HOH TIP . D 4 HOH A 196 796 796 HOH TIP . D 4 HOH A 197 797 797 HOH TIP . D 4 HOH A 198 798 798 HOH TIP . D 4 HOH A 199 799 799 HOH TIP . D 4 HOH A 200 800 800 HOH TIP . D 4 HOH A 201 801 801 HOH TIP . D 4 HOH A 202 802 802 HOH TIP . D 4 HOH A 203 803 803 HOH TIP . D 4 HOH A 204 804 804 HOH TIP . D 4 HOH A 205 805 805 HOH TIP . D 4 HOH A 206 806 806 HOH TIP . D 4 HOH A 207 807 807 HOH TIP . D 4 HOH A 208 808 808 HOH TIP . D 4 HOH A 209 809 809 HOH TIP . D 4 HOH A 210 810 810 HOH TIP . D 4 HOH A 211 811 811 HOH TIP . D 4 HOH A 212 812 812 HOH TIP . D 4 HOH A 213 813 813 HOH TIP . D 4 HOH A 214 814 814 HOH TIP . D 4 HOH A 215 815 815 HOH TIP . D 4 HOH A 216 816 816 HOH TIP . D 4 HOH A 217 817 817 HOH TIP . D 4 HOH A 218 818 818 HOH TIP . D 4 HOH A 219 819 819 HOH TIP . D 4 HOH A 220 820 820 HOH TIP . D 4 HOH A 221 821 821 HOH TIP . D 4 HOH A 222 822 822 HOH TIP . D 4 HOH A 223 823 823 HOH TIP . D 4 HOH A 224 824 824 HOH TIP . D 4 HOH A 225 825 825 HOH TIP . D 4 HOH A 226 826 826 HOH TIP . D 4 HOH A 227 827 827 HOH TIP . D 4 HOH A 228 828 828 HOH TIP . D 4 HOH A 229 829 829 HOH TIP . D 4 HOH A 230 830 830 HOH TIP . D 4 HOH A 231 831 831 HOH TIP . D 4 HOH A 232 832 832 HOH TIP . D 4 HOH A 233 833 833 HOH TIP . D 4 HOH A 234 834 834 HOH TIP . D 4 HOH A 235 835 835 HOH TIP . D 4 HOH A 236 836 836 HOH TIP . D 4 HOH A 237 837 837 HOH TIP . D 4 HOH A 238 838 838 HOH TIP . D 4 HOH A 239 839 839 HOH TIP . D 4 HOH A 240 840 840 HOH TIP . D 4 HOH A 241 841 841 HOH TIP . D 4 HOH A 242 842 842 HOH TIP . D 4 HOH A 243 843 843 HOH TIP . D 4 HOH A 244 844 844 HOH TIP . D 4 HOH A 245 845 845 HOH TIP . D 4 HOH A 246 846 846 HOH TIP . D 4 HOH A 247 847 847 HOH TIP . D 4 HOH A 248 848 848 HOH TIP . D 4 HOH A 249 849 849 HOH TIP . D 4 HOH A 250 850 850 HOH TIP . D 4 HOH A 251 851 851 HOH TIP . D 4 HOH A 252 852 852 HOH TIP . D 4 HOH A 253 853 853 HOH TIP . D 4 HOH A 254 854 854 HOH TIP . D 4 HOH A 255 855 855 HOH TIP . D 4 HOH A 256 856 856 HOH TIP . D 4 HOH A 257 857 857 HOH TIP . D 4 HOH A 258 858 858 HOH TIP . D 4 HOH A 259 859 859 HOH TIP . D 4 HOH A 260 860 860 HOH TIP . D 4 HOH A 261 861 861 HOH TIP . D 4 HOH A 262 862 862 HOH TIP . D 4 HOH A 263 863 863 HOH TIP . D 4 HOH A 264 864 864 HOH TIP . D 4 HOH A 265 865 865 HOH TIP . D 4 HOH A 266 866 866 HOH TIP . D 4 HOH A 267 867 867 HOH TIP . D 4 HOH A 268 868 868 HOH TIP . D 4 HOH A 269 869 869 HOH TIP . D 4 HOH A 270 870 870 HOH TIP . D 4 HOH A 271 871 871 HOH TIP . D 4 HOH A 272 872 872 HOH TIP . D 4 HOH A 273 873 873 HOH TIP . D 4 HOH A 274 874 874 HOH TIP . D 4 HOH A 275 875 875 HOH TIP . D 4 HOH A 276 876 876 HOH TIP . D 4 HOH A 277 877 877 HOH TIP . D 4 HOH A 278 878 878 HOH TIP . D 4 HOH A 279 879 879 HOH TIP . D 4 HOH A 280 880 880 HOH TIP . D 4 HOH A 281 881 881 HOH TIP . D 4 HOH A 282 882 882 HOH TIP . D 4 HOH A 283 883 883 HOH TIP . D 4 HOH A 284 884 884 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 97.354 46.453 -2.658 1 28.25 ? P PO4 511 A 1 HETATM 2 O O1 PO4 . . . B 2 98.897 46.236 -2.29 1 30.37 ? O1 PO4 511 A 1 HETATM 3 O O2 PO4 . . . B 2 97.004 45.308 -3.711 1 35.7 ? O2 PO4 511 A 1 HETATM 4 O O3 PO4 . . . B 2 96.465 46.243 -1.427 1 30.96 ? O3 PO4 511 A 1 HETATM 5 O O4 PO4 . . . B 2 97.133 47.832 -3.321 1 23.45 ? O4 PO4 511 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #