data_2YX4
#
_model_server_result.job_id            AvQQy3jykpRrWo0NcY_ufg 
_model_server_result.datetime_utc      '2024-11-12 20:40:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yx4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    2YX4 
#
_exptl.entry_id    2YX4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.144 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLUTAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YX4 
_cell.length_a            103.999 
_cell.length_b            103.999 
_cell.length_c            74.587 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YX4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA octameric 8 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1,2,3,4,5,6,7,8 
A,B,C,D 2 1,7 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H10 N2 O3' 
_chem_comp.formula_weight    146.144 
_chem_comp.id                GLN 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              GLUTAMINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLN sing 70 n n 
N H GLN sing 71 n n 
N H2 GLN sing 72 n n 
CA C GLN sing 73 n n 
CA CB GLN sing 74 n n 
CA HA GLN sing 75 n n 
C O GLN doub 76 n n 
C OXT GLN sing 77 n n 
CB CG GLN sing 78 n n 
CB HB2 GLN sing 79 n n 
CB HB3 GLN sing 80 n n 
CG CD GLN sing 81 n n 
CG HG2 GLN sing 82 n n 
CG HG3 GLN sing 83 n n 
CD OE1 GLN doub 84 n n 
CD NE2 GLN sing 85 n n 
NE2 HE21 GLN sing 86 n n 
NE2 HE22 GLN sing 87 n n 
OXT HXT GLN sing 88 n n 
#
_atom_sites.entry_id                     2YX4 
_atom_sites.fract_transf_matrix[1][1]    0.009615 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009615 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013407 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 2001 2001 MG MG . 
C 3 GLN A 1 1001 1001 GLN GLN . 
D 4 HOH A 1 2002 1 HOH HOH . 
D 4 HOH A 2 2003 2 HOH HOH . 
D 4 HOH A 3 2004 3 HOH HOH . 
D 4 HOH A 4 2005 4 HOH HOH . 
D 4 HOH A 5 2006 5 HOH HOH . 
D 4 HOH A 6 2007 6 HOH HOH . 
D 4 HOH A 7 2008 8 HOH HOH . 
D 4 HOH A 8 2009 9 HOH HOH . 
D 4 HOH A 9 2010 10 HOH HOH . 
D 4 HOH A 10 2011 11 HOH HOH . 
D 4 HOH A 11 2012 12 HOH HOH . 
D 4 HOH A 12 2013 13 HOH HOH . 
D 4 HOH A 13 2014 14 HOH HOH . 
D 4 HOH A 14 2015 15 HOH HOH . 
D 4 HOH A 15 2016 16 HOH HOH . 
D 4 HOH A 16 2017 17 HOH HOH . 
D 4 HOH A 17 2018 18 HOH HOH . 
D 4 HOH A 18 2019 19 HOH HOH . 
D 4 HOH A 19 2020 20 HOH HOH . 
D 4 HOH A 20 2021 21 HOH HOH . 
D 4 HOH A 21 2022 22 HOH HOH . 
D 4 HOH A 22 2023 23 HOH HOH . 
D 4 HOH A 23 2024 24 HOH HOH . 
D 4 HOH A 24 2025 25 HOH HOH . 
D 4 HOH A 25 2026 26 HOH HOH . 
D 4 HOH A 26 2027 27 HOH HOH . 
D 4 HOH A 27 2028 28 HOH HOH . 
D 4 HOH A 28 2029 29 HOH HOH . 
D 4 HOH A 29 2030 30 HOH HOH . 
D 4 HOH A 30 2031 31 HOH HOH . 
D 4 HOH A 31 2032 32 HOH HOH . 
D 4 HOH A 32 2033 33 HOH HOH . 
D 4 HOH A 33 2034 34 HOH HOH . 
D 4 HOH A 34 2035 35 HOH HOH . 
D 4 HOH A 35 2036 38 HOH HOH . 
D 4 HOH A 36 2037 39 HOH HOH . 
D 4 HOH A 37 2038 40 HOH HOH . 
D 4 HOH A 38 2039 41 HOH HOH . 
D 4 HOH A 39 2040 42 HOH HOH . 
D 4 HOH A 40 2041 43 HOH HOH . 
D 4 HOH A 41 2042 44 HOH HOH . 
D 4 HOH A 42 2043 45 HOH HOH . 
D 4 HOH A 43 2044 46 HOH HOH . 
D 4 HOH A 44 2045 47 HOH HOH . 
D 4 HOH A 45 2046 48 HOH HOH . 
D 4 HOH A 46 2047 49 HOH HOH . 
D 4 HOH A 47 2048 50 HOH HOH . 
D 4 HOH A 48 2049 51 HOH HOH . 
D 4 HOH A 49 2050 53 HOH HOH . 
D 4 HOH A 50 2051 54 HOH HOH . 
D 4 HOH A 51 2052 55 HOH HOH . 
D 4 HOH A 52 2053 56 HOH HOH . 
D 4 HOH A 53 2054 57 HOH HOH . 
D 4 HOH A 54 2055 58 HOH HOH . 
D 4 HOH A 55 2056 59 HOH HOH . 
D 4 HOH A 56 2057 60 HOH HOH . 
D 4 HOH A 57 2058 61 HOH HOH . 
D 4 HOH A 58 2059 62 HOH HOH . 
D 4 HOH A 59 2060 63 HOH HOH . 
D 4 HOH A 60 2061 64 HOH HOH . 
D 4 HOH A 61 2062 66 HOH HOH . 
D 4 HOH A 62 2063 67 HOH HOH . 
D 4 HOH A 63 2064 68 HOH HOH . 
D 4 HOH A 64 2065 69 HOH HOH . 
D 4 HOH A 65 2066 70 HOH HOH . 
D 4 HOH A 66 2067 71 HOH HOH . 
D 4 HOH A 67 2068 72 HOH HOH . 
D 4 HOH A 68 2069 73 HOH HOH . 
D 4 HOH A 69 2070 74 HOH HOH . 
D 4 HOH A 70 2071 75 HOH HOH . 
D 4 HOH A 71 2072 76 HOH HOH . 
D 4 HOH A 72 2073 77 HOH HOH . 
D 4 HOH A 73 2074 78 HOH HOH . 
D 4 HOH A 74 2075 79 HOH HOH . 
D 4 HOH A 75 2076 80 HOH HOH . 
D 4 HOH A 76 2077 81 HOH HOH . 
D 4 HOH A 77 2078 82 HOH HOH . 
D 4 HOH A 78 2079 83 HOH HOH . 
D 4 HOH A 79 2080 84 HOH HOH . 
D 4 HOH A 80 2081 85 HOH HOH . 
D 4 HOH A 81 2082 86 HOH HOH . 
D 4 HOH A 82 2083 87 HOH HOH . 
D 4 HOH A 83 2084 88 HOH HOH . 
D 4 HOH A 84 2085 89 HOH HOH . 
D 4 HOH A 85 2086 90 HOH HOH . 
D 4 HOH A 86 2087 91 HOH HOH . 
D 4 HOH A 87 2088 92 HOH HOH . 
D 4 HOH A 88 2089 93 HOH HOH . 
D 4 HOH A 89 2090 94 HOH HOH . 
D 4 HOH A 90 2091 96 HOH HOH . 
D 4 HOH A 91 2092 97 HOH HOH . 
D 4 HOH A 92 2093 98 HOH HOH . 
D 4 HOH A 93 2094 99 HOH HOH . 
D 4 HOH A 94 2095 100 HOH HOH . 
D 4 HOH A 95 2096 101 HOH HOH . 
D 4 HOH A 96 2097 102 HOH HOH . 
D 4 HOH A 97 2098 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLN . . . C 3 54.87 33.02 8.741 1 89.71 ? N GLN 1001 A 1 
HETATM 2 C CA GLN . . . C 3 53.836 32.376 7.867 1 90.23 ? CA GLN 1001 A 1 
HETATM 3 C C GLN . . . C 3 54.196 32.524 6.393 1 90.49 ? C GLN 1001 A 1 
HETATM 4 O O GLN . . . C 3 53.325 32.982 5.623 1 90.81 ? O GLN 1001 A 1 
HETATM 5 C CB GLN . . . C 3 52.468 33.011 8.116 1 90.18 ? CB GLN 1001 A 1 
HETATM 6 C CG GLN . . . C 3 52.007 32.978 9.561 1 90.94 ? CG GLN 1001 A 1 
HETATM 7 C CD GLN . . . C 3 50.53 33.298 9.7 1 91.41 ? CD GLN 1001 A 1 
HETATM 8 O OE1 GLN . . . C 3 50.063 34.337 9.233 1 92.08 ? OE1 GLN 1001 A 1 
HETATM 9 N NE2 GLN . . . C 3 49.785 32.404 10.346 1 91.16 ? NE2 GLN 1001 A 1 
HETATM 10 O OXT GLN . . . C 3 55.34 32.173 6.035 1 90.03 ? OXT GLN 1001 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#