data_2YX4 # _model_server_result.job_id 1FAbNbhzAendhk7xrcCJkw _model_server_result.datetime_utc '2024-11-12 20:41:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 2YX4 # _exptl.entry_id 2YX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YX4 _cell.length_a 103.999 _cell.length_b 103.999 _cell.length_c 74.587 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3,4,5,6,7,8 A,B,C,D 2 1,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2YX4 _atom_sites.fract_transf_matrix[1][1] 0.009615 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 2001 2001 MG MG . C 3 GLN A 1 1001 1001 GLN GLN . D 4 HOH A 1 2002 1 HOH HOH . D 4 HOH A 2 2003 2 HOH HOH . D 4 HOH A 3 2004 3 HOH HOH . D 4 HOH A 4 2005 4 HOH HOH . D 4 HOH A 5 2006 5 HOH HOH . D 4 HOH A 6 2007 6 HOH HOH . D 4 HOH A 7 2008 8 HOH HOH . D 4 HOH A 8 2009 9 HOH HOH . D 4 HOH A 9 2010 10 HOH HOH . D 4 HOH A 10 2011 11 HOH HOH . D 4 HOH A 11 2012 12 HOH HOH . D 4 HOH A 12 2013 13 HOH HOH . D 4 HOH A 13 2014 14 HOH HOH . D 4 HOH A 14 2015 15 HOH HOH . D 4 HOH A 15 2016 16 HOH HOH . D 4 HOH A 16 2017 17 HOH HOH . D 4 HOH A 17 2018 18 HOH HOH . D 4 HOH A 18 2019 19 HOH HOH . D 4 HOH A 19 2020 20 HOH HOH . D 4 HOH A 20 2021 21 HOH HOH . D 4 HOH A 21 2022 22 HOH HOH . D 4 HOH A 22 2023 23 HOH HOH . D 4 HOH A 23 2024 24 HOH HOH . D 4 HOH A 24 2025 25 HOH HOH . D 4 HOH A 25 2026 26 HOH HOH . D 4 HOH A 26 2027 27 HOH HOH . D 4 HOH A 27 2028 28 HOH HOH . D 4 HOH A 28 2029 29 HOH HOH . D 4 HOH A 29 2030 30 HOH HOH . D 4 HOH A 30 2031 31 HOH HOH . D 4 HOH A 31 2032 32 HOH HOH . D 4 HOH A 32 2033 33 HOH HOH . D 4 HOH A 33 2034 34 HOH HOH . D 4 HOH A 34 2035 35 HOH HOH . D 4 HOH A 35 2036 38 HOH HOH . D 4 HOH A 36 2037 39 HOH HOH . D 4 HOH A 37 2038 40 HOH HOH . D 4 HOH A 38 2039 41 HOH HOH . D 4 HOH A 39 2040 42 HOH HOH . D 4 HOH A 40 2041 43 HOH HOH . D 4 HOH A 41 2042 44 HOH HOH . D 4 HOH A 42 2043 45 HOH HOH . D 4 HOH A 43 2044 46 HOH HOH . D 4 HOH A 44 2045 47 HOH HOH . D 4 HOH A 45 2046 48 HOH HOH . D 4 HOH A 46 2047 49 HOH HOH . D 4 HOH A 47 2048 50 HOH HOH . D 4 HOH A 48 2049 51 HOH HOH . D 4 HOH A 49 2050 53 HOH HOH . D 4 HOH A 50 2051 54 HOH HOH . D 4 HOH A 51 2052 55 HOH HOH . D 4 HOH A 52 2053 56 HOH HOH . D 4 HOH A 53 2054 57 HOH HOH . D 4 HOH A 54 2055 58 HOH HOH . D 4 HOH A 55 2056 59 HOH HOH . D 4 HOH A 56 2057 60 HOH HOH . D 4 HOH A 57 2058 61 HOH HOH . D 4 HOH A 58 2059 62 HOH HOH . D 4 HOH A 59 2060 63 HOH HOH . D 4 HOH A 60 2061 64 HOH HOH . D 4 HOH A 61 2062 66 HOH HOH . D 4 HOH A 62 2063 67 HOH HOH . D 4 HOH A 63 2064 68 HOH HOH . D 4 HOH A 64 2065 69 HOH HOH . D 4 HOH A 65 2066 70 HOH HOH . D 4 HOH A 66 2067 71 HOH HOH . D 4 HOH A 67 2068 72 HOH HOH . D 4 HOH A 68 2069 73 HOH HOH . D 4 HOH A 69 2070 74 HOH HOH . D 4 HOH A 70 2071 75 HOH HOH . D 4 HOH A 71 2072 76 HOH HOH . D 4 HOH A 72 2073 77 HOH HOH . D 4 HOH A 73 2074 78 HOH HOH . D 4 HOH A 74 2075 79 HOH HOH . D 4 HOH A 75 2076 80 HOH HOH . D 4 HOH A 76 2077 81 HOH HOH . D 4 HOH A 77 2078 82 HOH HOH . D 4 HOH A 78 2079 83 HOH HOH . D 4 HOH A 79 2080 84 HOH HOH . D 4 HOH A 80 2081 85 HOH HOH . D 4 HOH A 81 2082 86 HOH HOH . D 4 HOH A 82 2083 87 HOH HOH . D 4 HOH A 83 2084 88 HOH HOH . D 4 HOH A 84 2085 89 HOH HOH . D 4 HOH A 85 2086 90 HOH HOH . D 4 HOH A 86 2087 91 HOH HOH . D 4 HOH A 87 2088 92 HOH HOH . D 4 HOH A 88 2089 93 HOH HOH . D 4 HOH A 89 2090 94 HOH HOH . D 4 HOH A 90 2091 96 HOH HOH . D 4 HOH A 91 2092 97 HOH HOH . D 4 HOH A 92 2093 98 HOH HOH . D 4 HOH A 93 2094 99 HOH HOH . D 4 HOH A 94 2095 100 HOH HOH . D 4 HOH A 95 2096 101 HOH HOH . D 4 HOH A 96 2097 102 HOH HOH . D 4 HOH A 97 2098 103 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.086 _atom_site.Cartn_y 26.1 _atom_site.Cartn_z 0.04 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 57.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #