data_2YXD
#
_model_server_result.job_id            WiyCVUo2GHLGdaRc04Yejw 
_model_server_result.datetime_utc      '2024-11-12 20:39:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yxd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    2YXD 
#
_exptl.entry_id    2YXD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YXD 
_cell.length_a            93.442 
_cell.length_b            93.442 
_cell.length_c            81.042 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,B,C,D,E,F,G 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 93.442 93.442 40.521 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 4 A MSE 4 1_555 A N ILE 5 A ILE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale2 A C GLY 48 A GLY 48 1_555 A N MSE 49 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale3 A C MSE 49 A MSE 49 1_555 A N THR 50 A THR 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale4 A C HIS 168 A HIS 168 1_555 A N MSE 169 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
covale ? covale5 A C MSE 169 A MSE 169 1_555 A N PHE 170 A PHE 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale6 B C MSE 4 B MSE 4 1_555 B N ILE 5 B ILE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 B C GLY 48 B GLY 48 1_555 B N MSE 49 B MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? 
covale ? covale8 B C MSE 49 B MSE 49 1_555 B N THR 50 B THR 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale9 B C HIS 168 B HIS 168 1_555 B N MSE 169 B MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
covale ? covale10 B C MSE 169 B MSE 169 1_555 B N PHE 170 B PHE 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 315 n n 
S O2 SO4 doub 316 n n 
S O3 SO4 sing 317 n n 
S O4 SO4 sing 318 n n 
#
_atom_sites.entry_id                     2YXD 
_atom_sites.fract_transf_matrix[1][1]    0.010702 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010702 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012339 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1001 1 SO4 SO4 . 
D 2 SO4 B 1 1002 2 SO4 SO4 . 
E 3 MES B 1 2001 1 MES MES . 
F 4 HOH A 1 1002 2 HOH HOH . 
F 4 HOH A 2 1003 3 HOH HOH . 
F 4 HOH A 3 1004 8 HOH HOH . 
F 4 HOH A 4 1005 9 HOH HOH . 
F 4 HOH A 5 1006 10 HOH HOH . 
F 4 HOH A 6 1007 11 HOH HOH . 
F 4 HOH A 7 1008 14 HOH HOH . 
F 4 HOH A 8 1009 15 HOH HOH . 
F 4 HOH A 9 1010 16 HOH HOH . 
F 4 HOH A 10 1011 17 HOH HOH . 
F 4 HOH A 11 1012 19 HOH HOH . 
F 4 HOH A 12 1013 20 HOH HOH . 
F 4 HOH A 13 1014 24 HOH HOH . 
F 4 HOH A 14 1015 25 HOH HOH . 
F 4 HOH A 15 1016 26 HOH HOH . 
F 4 HOH A 16 1017 27 HOH HOH . 
F 4 HOH A 17 1018 31 HOH HOH . 
F 4 HOH A 18 1019 32 HOH HOH . 
F 4 HOH A 19 1020 34 HOH HOH . 
F 4 HOH A 20 1021 37 HOH HOH . 
F 4 HOH A 21 1022 38 HOH HOH . 
F 4 HOH A 22 1023 40 HOH HOH . 
F 4 HOH A 23 1024 41 HOH HOH . 
F 4 HOH A 24 1025 42 HOH HOH . 
F 4 HOH A 25 1026 45 HOH HOH . 
F 4 HOH A 26 1027 47 HOH HOH . 
F 4 HOH A 27 1028 48 HOH HOH . 
F 4 HOH A 28 1029 50 HOH HOH . 
F 4 HOH A 29 1030 51 HOH HOH . 
F 4 HOH A 30 1031 52 HOH HOH . 
F 4 HOH A 31 1032 53 HOH HOH . 
F 4 HOH A 32 1033 54 HOH HOH . 
F 4 HOH A 33 1034 56 HOH HOH . 
F 4 HOH A 34 1035 57 HOH HOH . 
F 4 HOH A 35 1036 58 HOH HOH . 
F 4 HOH A 36 1037 61 HOH HOH . 
F 4 HOH A 37 1038 65 HOH HOH . 
F 4 HOH A 38 1039 68 HOH HOH . 
F 4 HOH A 39 1040 70 HOH HOH . 
F 4 HOH A 40 1041 72 HOH HOH . 
F 4 HOH A 41 1042 73 HOH HOH . 
F 4 HOH A 42 1043 74 HOH HOH . 
F 4 HOH A 43 1044 76 HOH HOH . 
F 4 HOH A 44 1045 78 HOH HOH . 
F 4 HOH A 45 1046 79 HOH HOH . 
F 4 HOH A 46 1047 83 HOH HOH . 
F 4 HOH A 47 1048 87 HOH HOH . 
F 4 HOH A 48 1049 88 HOH HOH . 
F 4 HOH A 49 1050 91 HOH HOH . 
F 4 HOH A 50 1051 94 HOH HOH . 
F 4 HOH A 51 1052 95 HOH HOH . 
F 4 HOH A 52 1053 96 HOH HOH . 
F 4 HOH A 53 1054 97 HOH HOH . 
F 4 HOH A 54 1055 98 HOH HOH . 
F 4 HOH A 55 1056 102 HOH HOH . 
F 4 HOH A 56 1057 103 HOH HOH . 
F 4 HOH A 57 1058 105 HOH HOH . 
F 4 HOH A 58 1059 106 HOH HOH . 
F 4 HOH A 59 1060 108 HOH HOH . 
F 4 HOH A 60 1061 109 HOH HOH . 
F 4 HOH A 61 1062 110 HOH HOH . 
G 4 HOH B 1 2002 1 HOH HOH . 
G 4 HOH B 2 2003 4 HOH HOH . 
G 4 HOH B 3 2004 5 HOH HOH . 
G 4 HOH B 4 2005 6 HOH HOH . 
G 4 HOH B 5 2006 7 HOH HOH . 
G 4 HOH B 6 2007 12 HOH HOH . 
G 4 HOH B 7 2008 13 HOH HOH . 
G 4 HOH B 8 2009 18 HOH HOH . 
G 4 HOH B 9 2010 21 HOH HOH . 
G 4 HOH B 10 2011 22 HOH HOH . 
G 4 HOH B 11 2012 23 HOH HOH . 
G 4 HOH B 12 2013 29 HOH HOH . 
G 4 HOH B 13 2014 30 HOH HOH . 
G 4 HOH B 14 2015 33 HOH HOH . 
G 4 HOH B 15 2016 35 HOH HOH . 
G 4 HOH B 16 2017 36 HOH HOH . 
G 4 HOH B 17 2018 39 HOH HOH . 
G 4 HOH B 18 2019 43 HOH HOH . 
G 4 HOH B 19 2020 44 HOH HOH . 
G 4 HOH B 20 2021 46 HOH HOH . 
G 4 HOH B 21 2022 49 HOH HOH . 
G 4 HOH B 22 2023 55 HOH HOH . 
G 4 HOH B 23 2024 59 HOH HOH . 
G 4 HOH B 24 2025 60 HOH HOH . 
G 4 HOH B 25 2026 62 HOH HOH . 
G 4 HOH B 26 2027 63 HOH HOH . 
G 4 HOH B 27 2028 64 HOH HOH . 
G 4 HOH B 28 2029 66 HOH HOH . 
G 4 HOH B 29 2030 67 HOH HOH . 
G 4 HOH B 30 2031 69 HOH HOH . 
G 4 HOH B 31 2032 71 HOH HOH . 
G 4 HOH B 32 2033 75 HOH HOH . 
G 4 HOH B 33 2034 77 HOH HOH . 
G 4 HOH B 34 2035 80 HOH HOH . 
G 4 HOH B 35 2036 81 HOH HOH . 
G 4 HOH B 36 2037 82 HOH HOH . 
G 4 HOH B 37 2038 84 HOH HOH . 
G 4 HOH B 38 2039 85 HOH HOH . 
G 4 HOH B 39 2040 86 HOH HOH . 
G 4 HOH B 40 2041 89 HOH HOH . 
G 4 HOH B 41 2042 90 HOH HOH . 
G 4 HOH B 42 2043 92 HOH HOH . 
G 4 HOH B 43 2044 93 HOH HOH . 
G 4 HOH B 44 2045 99 HOH HOH . 
G 4 HOH B 45 2046 104 HOH HOH . 
G 4 HOH B 46 2047 107 HOH HOH . 
G 4 HOH B 47 2048 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . D 2 77.456 3.636 36.787 1 58.42 ? S SO4 1002 B 1 
HETATM 2 O O1 SO4 . . . D 2 78.902 3.567 37.081 1 58.28 ? O1 SO4 1002 B 1 
HETATM 3 O O2 SO4 . . . D 2 77.473 3.474 35.343 1 58.16 ? O2 SO4 1002 B 1 
HETATM 4 O O3 SO4 . . . D 2 76.677 2.586 37.578 1 60.33 ? O3 SO4 1002 B 1 
HETATM 5 O O4 SO4 . . . D 2 77.13 4.984 37.32 1 61.29 ? O4 SO4 1002 B 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#