data_2YXH
#
_model_server_result.job_id            g5dEHgVpljcnqHtupPwv8Q 
_model_server_result.datetime_utc      '2024-12-21 16:20:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yxh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    2YXH 
#
_exptl.entry_id    2YXH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YXH 
_cell.length_a            74.829 
_cell.length_b            56.788 
_cell.length_c            61.615 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YXH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 34 A GLU 34 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc2 A OE1 GLU 34 A GLU 34 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc3 A OE2 GLU 37 A GLU 37 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc4 A OE1 GLU 53 A GLU 53 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc5 A OD2 ASP 56 A ASP 56 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
metalc ? metalc6 A OD2 ASP 60 A ASP 60 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc7 B OE2 GLU 34 B GLU 34 1_555 E MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc8 B OE1 GLU 34 B GLU 34 1_555 F MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc9 B OE1 GLU 37 B GLU 37 1_555 F MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? 
metalc ? metalc10 B OE1 GLU 53 B GLU 53 1_555 F MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc11 B OD2 ASP 56 B ASP 56 1_555 F MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc12 B OD2 ASP 60 B ASP 60 1_555 E MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2YXH 
_atom_sites.fract_transf_matrix[1][1]    0.013364 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017609 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01623 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 501 1 MG MG . 
D 2 MG A 1 502 1 MG MG . 
E 2 MG B 1 503 1 MG MG . 
F 2 MG B 1 504 1 MG MG . 
G 3 HOH A 1 503 1 HOH HOH . 
G 3 HOH A 2 504 4 HOH HOH . 
G 3 HOH A 3 505 7 HOH HOH . 
G 3 HOH A 4 506 11 HOH HOH . 
G 3 HOH A 5 507 13 HOH HOH . 
G 3 HOH A 6 508 14 HOH HOH . 
G 3 HOH A 7 509 20 HOH HOH . 
G 3 HOH A 8 510 25 HOH HOH . 
G 3 HOH A 9 511 28 HOH HOH . 
G 3 HOH A 10 512 31 HOH HOH . 
G 3 HOH A 11 513 35 HOH HOH . 
G 3 HOH A 12 514 38 HOH HOH . 
G 3 HOH A 13 515 39 HOH HOH . 
G 3 HOH A 14 516 44 HOH HOH . 
G 3 HOH A 15 517 45 HOH HOH . 
G 3 HOH A 16 518 47 HOH HOH . 
G 3 HOH A 17 519 50 HOH HOH . 
G 3 HOH A 18 520 51 HOH HOH . 
G 3 HOH A 19 521 57 HOH HOH . 
G 3 HOH A 20 522 59 HOH HOH . 
G 3 HOH A 21 523 63 HOH HOH . 
G 3 HOH A 22 524 64 HOH HOH . 
G 3 HOH A 23 525 66 HOH HOH . 
G 3 HOH A 24 526 67 HOH HOH . 
G 3 HOH A 25 527 68 HOH HOH . 
G 3 HOH A 26 528 69 HOH HOH . 
G 3 HOH A 27 529 72 HOH HOH . 
G 3 HOH A 28 530 73 HOH HOH . 
G 3 HOH A 29 531 74 HOH HOH . 
G 3 HOH A 30 532 76 HOH HOH . 
G 3 HOH A 31 533 78 HOH HOH . 
G 3 HOH A 32 534 79 HOH HOH . 
G 3 HOH A 33 535 82 HOH HOH . 
G 3 HOH A 34 536 83 HOH HOH . 
G 3 HOH A 35 537 84 HOH HOH . 
G 3 HOH A 36 538 85 HOH HOH . 
G 3 HOH A 37 539 86 HOH HOH . 
G 3 HOH A 38 540 87 HOH HOH . 
G 3 HOH A 39 541 89 HOH HOH . 
G 3 HOH A 40 542 91 HOH HOH . 
G 3 HOH A 41 543 96 HOH HOH . 
G 3 HOH A 42 544 98 HOH HOH . 
G 3 HOH A 43 545 99 HOH HOH . 
G 3 HOH A 44 546 100 HOH HOH . 
G 3 HOH A 45 547 108 HOH HOH . 
G 3 HOH A 46 548 109 HOH HOH . 
G 3 HOH A 47 549 111 HOH HOH . 
G 3 HOH A 48 550 112 HOH HOH . 
G 3 HOH A 49 551 114 HOH HOH . 
G 3 HOH A 50 552 116 HOH HOH . 
G 3 HOH A 51 553 117 HOH HOH . 
G 3 HOH A 52 554 118 HOH HOH . 
G 3 HOH A 53 555 119 HOH HOH . 
G 3 HOH A 54 556 120 HOH HOH . 
G 3 HOH A 55 557 121 HOH HOH . 
G 3 HOH A 56 558 122 HOH HOH . 
G 3 HOH A 57 559 123 HOH HOH . 
G 3 HOH A 58 560 124 HOH HOH . 
G 3 HOH A 59 561 127 HOH HOH . 
G 3 HOH A 60 562 131 HOH HOH . 
G 3 HOH A 61 563 134 HOH HOH . 
G 3 HOH A 62 564 136 HOH HOH . 
G 3 HOH A 63 565 137 HOH HOH . 
G 3 HOH A 64 566 139 HOH HOH . 
G 3 HOH A 65 567 143 HOH HOH . 
G 3 HOH A 66 568 146 HOH HOH . 
G 3 HOH A 67 569 148 HOH HOH . 
G 3 HOH A 68 570 150 HOH HOH . 
G 3 HOH A 69 571 154 HOH HOH . 
G 3 HOH A 70 572 156 HOH HOH . 
G 3 HOH A 71 573 160 HOH HOH . 
G 3 HOH A 72 574 162 HOH HOH . 
G 3 HOH A 73 575 163 HOH HOH . 
G 3 HOH A 74 576 168 HOH HOH . 
G 3 HOH A 75 577 171 HOH HOH . 
G 3 HOH A 76 578 173 HOH HOH . 
G 3 HOH A 77 579 175 HOH HOH . 
G 3 HOH A 78 580 177 HOH HOH . 
G 3 HOH A 79 581 178 HOH HOH . 
G 3 HOH A 80 582 179 HOH HOH . 
G 3 HOH A 81 583 180 HOH HOH . 
G 3 HOH A 82 584 181 HOH HOH . 
G 3 HOH A 83 585 182 HOH HOH . 
G 3 HOH A 84 586 183 HOH HOH . 
G 3 HOH A 85 587 184 HOH HOH . 
G 3 HOH A 86 588 189 HOH HOH . 
G 3 HOH A 87 589 192 HOH HOH . 
G 3 HOH A 88 590 193 HOH HOH . 
G 3 HOH A 89 591 198 HOH HOH . 
G 3 HOH A 90 592 205 HOH HOH . 
G 3 HOH A 91 593 206 HOH HOH . 
G 3 HOH A 92 594 207 HOH HOH . 
G 3 HOH A 93 595 208 HOH HOH . 
G 3 HOH A 94 596 209 HOH HOH . 
G 3 HOH A 95 597 213 HOH HOH . 
G 3 HOH A 96 598 214 HOH HOH . 
G 3 HOH A 97 599 215 HOH HOH . 
G 3 HOH A 98 600 217 HOH HOH . 
G 3 HOH A 99 601 219 HOH HOH . 
G 3 HOH A 100 602 221 HOH HOH . 
G 3 HOH A 101 603 222 HOH HOH . 
G 3 HOH A 102 604 223 HOH HOH . 
G 3 HOH A 103 605 224 HOH HOH . 
G 3 HOH A 104 606 225 HOH HOH . 
G 3 HOH A 105 607 226 HOH HOH . 
G 3 HOH A 106 608 227 HOH HOH . 
G 3 HOH A 107 609 228 HOH HOH . 
H 3 HOH B 1 505 2 HOH HOH . 
H 3 HOH B 2 506 3 HOH HOH . 
H 3 HOH B 3 507 5 HOH HOH . 
H 3 HOH B 4 508 6 HOH HOH . 
H 3 HOH B 5 509 8 HOH HOH . 
H 3 HOH B 6 510 9 HOH HOH . 
H 3 HOH B 7 511 10 HOH HOH . 
H 3 HOH B 8 512 12 HOH HOH . 
H 3 HOH B 9 513 15 HOH HOH . 
H 3 HOH B 10 514 16 HOH HOH . 
H 3 HOH B 11 515 17 HOH HOH . 
H 3 HOH B 12 516 18 HOH HOH . 
H 3 HOH B 13 517 19 HOH HOH . 
H 3 HOH B 14 518 21 HOH HOH . 
H 3 HOH B 15 519 22 HOH HOH . 
H 3 HOH B 16 520 23 HOH HOH . 
H 3 HOH B 17 521 24 HOH HOH . 
H 3 HOH B 18 522 26 HOH HOH . 
H 3 HOH B 19 523 27 HOH HOH . 
H 3 HOH B 20 524 29 HOH HOH . 
H 3 HOH B 21 525 30 HOH HOH . 
H 3 HOH B 22 526 32 HOH HOH . 
H 3 HOH B 23 527 33 HOH HOH . 
H 3 HOH B 24 528 34 HOH HOH . 
H 3 HOH B 25 529 36 HOH HOH . 
H 3 HOH B 26 530 37 HOH HOH . 
H 3 HOH B 27 531 40 HOH HOH . 
H 3 HOH B 28 532 41 HOH HOH . 
H 3 HOH B 29 533 42 HOH HOH . 
H 3 HOH B 30 534 43 HOH HOH . 
H 3 HOH B 31 535 46 HOH HOH . 
H 3 HOH B 32 536 48 HOH HOH . 
H 3 HOH B 33 537 49 HOH HOH . 
H 3 HOH B 34 538 52 HOH HOH . 
H 3 HOH B 35 539 53 HOH HOH . 
H 3 HOH B 36 540 54 HOH HOH . 
H 3 HOH B 37 541 55 HOH HOH . 
H 3 HOH B 38 542 56 HOH HOH . 
H 3 HOH B 39 543 58 HOH HOH . 
H 3 HOH B 40 544 60 HOH HOH . 
H 3 HOH B 41 545 61 HOH HOH . 
H 3 HOH B 42 546 62 HOH HOH . 
H 3 HOH B 43 547 65 HOH HOH . 
H 3 HOH B 44 548 70 HOH HOH . 
H 3 HOH B 45 549 71 HOH HOH . 
H 3 HOH B 46 550 75 HOH HOH . 
H 3 HOH B 47 551 77 HOH HOH . 
H 3 HOH B 48 552 80 HOH HOH . 
H 3 HOH B 49 553 81 HOH HOH . 
H 3 HOH B 50 554 88 HOH HOH . 
H 3 HOH B 51 555 90 HOH HOH . 
H 3 HOH B 52 556 92 HOH HOH . 
H 3 HOH B 53 557 93 HOH HOH . 
H 3 HOH B 54 558 94 HOH HOH . 
H 3 HOH B 55 559 95 HOH HOH . 
H 3 HOH B 56 560 97 HOH HOH . 
H 3 HOH B 57 561 101 HOH HOH . 
H 3 HOH B 58 562 102 HOH HOH . 
H 3 HOH B 59 563 103 HOH HOH . 
H 3 HOH B 60 564 104 HOH HOH . 
H 3 HOH B 61 565 105 HOH HOH . 
H 3 HOH B 62 566 106 HOH HOH . 
H 3 HOH B 63 567 107 HOH HOH . 
H 3 HOH B 64 568 110 HOH HOH . 
H 3 HOH B 65 569 113 HOH HOH . 
H 3 HOH B 66 570 115 HOH HOH . 
H 3 HOH B 67 571 125 HOH HOH . 
H 3 HOH B 68 572 126 HOH HOH . 
H 3 HOH B 69 573 128 HOH HOH . 
H 3 HOH B 70 574 129 HOH HOH . 
H 3 HOH B 71 575 130 HOH HOH . 
H 3 HOH B 72 576 132 HOH HOH . 
H 3 HOH B 73 577 133 HOH HOH . 
H 3 HOH B 74 578 135 HOH HOH . 
H 3 HOH B 75 579 138 HOH HOH . 
H 3 HOH B 76 580 140 HOH HOH . 
H 3 HOH B 77 581 141 HOH HOH . 
H 3 HOH B 78 582 142 HOH HOH . 
H 3 HOH B 79 583 144 HOH HOH . 
H 3 HOH B 80 584 145 HOH HOH . 
H 3 HOH B 81 585 147 HOH HOH . 
H 3 HOH B 82 586 149 HOH HOH . 
H 3 HOH B 83 587 151 HOH HOH . 
H 3 HOH B 84 588 152 HOH HOH . 
H 3 HOH B 85 589 153 HOH HOH . 
H 3 HOH B 86 590 155 HOH HOH . 
H 3 HOH B 87 591 157 HOH HOH . 
H 3 HOH B 88 592 158 HOH HOH . 
H 3 HOH B 89 593 159 HOH HOH . 
H 3 HOH B 90 594 161 HOH HOH . 
H 3 HOH B 91 595 164 HOH HOH . 
H 3 HOH B 92 596 165 HOH HOH . 
H 3 HOH B 93 597 166 HOH HOH . 
H 3 HOH B 94 598 167 HOH HOH . 
H 3 HOH B 95 599 169 HOH HOH . 
H 3 HOH B 96 600 170 HOH HOH . 
H 3 HOH B 97 601 172 HOH HOH . 
H 3 HOH B 98 602 174 HOH HOH . 
H 3 HOH B 99 603 176 HOH HOH . 
H 3 HOH B 100 604 185 HOH HOH . 
H 3 HOH B 101 605 186 HOH HOH . 
H 3 HOH B 102 606 187 HOH HOH . 
H 3 HOH B 103 607 188 HOH HOH . 
H 3 HOH B 104 608 190 HOH HOH . 
H 3 HOH B 105 609 191 HOH HOH . 
H 3 HOH B 106 610 194 HOH HOH . 
H 3 HOH B 107 611 195 HOH HOH . 
H 3 HOH B 108 612 196 HOH HOH . 
H 3 HOH B 109 613 197 HOH HOH . 
H 3 HOH B 110 614 199 HOH HOH . 
H 3 HOH B 111 615 200 HOH HOH . 
H 3 HOH B 112 616 201 HOH HOH . 
H 3 HOH B 113 617 202 HOH HOH . 
H 3 HOH B 114 618 203 HOH HOH . 
H 3 HOH B 115 619 204 HOH HOH . 
H 3 HOH B 116 620 210 HOH HOH . 
H 3 HOH B 117 621 211 HOH HOH . 
H 3 HOH B 118 622 212 HOH HOH . 
H 3 HOH B 119 623 216 HOH HOH . 
H 3 HOH B 120 624 218 HOH HOH . 
H 3 HOH B 121 625 220 HOH HOH . 
H 3 HOH B 122 626 229 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               44.05 
_atom_site.Cartn_y               7.022 
_atom_site.Cartn_z               39.676 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        31.57 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#