data_2YXN # _model_server_result.job_id MFYVfc2au1i6ZIY9cdSklw _model_server_result.datetime_utc '2024-11-02 06:23:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 2YXN # _exptl.entry_id 2YXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-AZIDO-L-TYROSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2YXN _cell.length_a 83.155 _cell.length_b 83.155 _cell.length_c 93.668 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H10 N4 O3' _chem_comp.formula_weight 222.201 _chem_comp.id AZY _chem_comp.mon_nstd_flag n _chem_comp.name 3-AZIDO-L-TYROSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C AZY sing 70 n n OXT HXT AZY sing 71 n n C O AZY doub 72 n n C CA AZY sing 73 n n CA N AZY sing 74 n n CA CB AZY sing 75 n n CA HA AZY sing 76 n n N HN1 AZY sing 77 n n N HN2 AZY sing 78 n n CB CG AZY sing 79 n n CB HB1 AZY sing 80 n n CB HB2 AZY sing 81 n n CG CD1 AZY sing 82 n y CG CD2 AZY doub 83 n y CD2 CE2 AZY sing 84 n y CD2 HD2 AZY sing 85 n n CD1 CE1 AZY doub 86 n y CD1 HD1 AZY sing 87 n n CE1 CZ AZY sing 88 n y CE1 HE1 AZY sing 89 n n CZ OH AZY sing 90 n n CZ CE2 AZY doub 91 n y OH HOH AZY sing 92 n n CE2 N1 AZY sing 93 n n N1 N2 AZY doub 94 n n N2 N3 AZY doub 95 n n # _atom_sites.entry_id 2YXN _atom_sites.fract_transf_matrix[1][1] 0.012026 _atom_sites.fract_transf_matrix[1][2] 0.006943 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AZY A 1 501 501 AZY DRG . C 3 HOH A 1 502 1 HOH TIP . C 3 HOH A 2 503 2 HOH TIP . C 3 HOH A 3 504 3 HOH TIP . C 3 HOH A 4 505 4 HOH TIP . C 3 HOH A 5 506 5 HOH TIP . C 3 HOH A 6 507 6 HOH TIP . C 3 HOH A 7 508 7 HOH TIP . C 3 HOH A 8 509 8 HOH TIP . C 3 HOH A 9 510 9 HOH TIP . C 3 HOH A 10 511 10 HOH TIP . C 3 HOH A 11 512 11 HOH TIP . C 3 HOH A 12 513 12 HOH TIP . C 3 HOH A 13 514 13 HOH TIP . C 3 HOH A 14 515 14 HOH TIP . C 3 HOH A 15 516 15 HOH TIP . C 3 HOH A 16 517 16 HOH TIP . C 3 HOH A 17 518 17 HOH TIP . C 3 HOH A 18 519 18 HOH TIP . C 3 HOH A 19 520 19 HOH TIP . C 3 HOH A 20 521 20 HOH TIP . C 3 HOH A 21 522 21 HOH TIP . C 3 HOH A 22 523 22 HOH TIP . C 3 HOH A 23 524 23 HOH TIP . C 3 HOH A 24 525 24 HOH TIP . C 3 HOH A 25 526 25 HOH TIP . C 3 HOH A 26 527 26 HOH TIP . C 3 HOH A 27 528 27 HOH TIP . C 3 HOH A 28 529 28 HOH TIP . C 3 HOH A 29 530 29 HOH TIP . C 3 HOH A 30 531 30 HOH TIP . C 3 HOH A 31 532 31 HOH TIP . C 3 HOH A 32 533 32 HOH TIP . C 3 HOH A 33 534 33 HOH TIP . C 3 HOH A 34 535 34 HOH TIP . C 3 HOH A 35 536 35 HOH TIP . C 3 HOH A 36 537 36 HOH TIP . C 3 HOH A 37 538 37 HOH TIP . C 3 HOH A 38 539 38 HOH TIP . C 3 HOH A 39 540 39 HOH TIP . C 3 HOH A 40 541 40 HOH TIP . C 3 HOH A 41 542 41 HOH TIP . C 3 HOH A 42 543 42 HOH TIP . C 3 HOH A 43 544 43 HOH TIP . C 3 HOH A 44 545 44 HOH TIP . C 3 HOH A 45 546 45 HOH TIP . C 3 HOH A 46 547 46 HOH TIP . C 3 HOH A 47 548 47 HOH TIP . C 3 HOH A 48 549 48 HOH TIP . C 3 HOH A 49 550 49 HOH TIP . C 3 HOH A 50 551 50 HOH TIP . C 3 HOH A 51 552 51 HOH TIP . C 3 HOH A 52 553 52 HOH TIP . C 3 HOH A 53 554 53 HOH TIP . C 3 HOH A 54 555 54 HOH TIP . C 3 HOH A 55 556 55 HOH TIP . C 3 HOH A 56 557 56 HOH TIP . C 3 HOH A 57 558 57 HOH TIP . C 3 HOH A 58 559 58 HOH TIP . C 3 HOH A 59 560 59 HOH TIP . C 3 HOH A 60 561 60 HOH TIP . C 3 HOH A 61 562 61 HOH TIP . C 3 HOH A 62 563 62 HOH TIP . C 3 HOH A 63 564 63 HOH TIP . C 3 HOH A 64 565 64 HOH TIP . C 3 HOH A 65 566 65 HOH TIP . C 3 HOH A 66 567 66 HOH TIP . C 3 HOH A 67 568 67 HOH TIP . C 3 HOH A 68 569 68 HOH TIP . C 3 HOH A 69 570 69 HOH TIP . C 3 HOH A 70 571 70 HOH TIP . C 3 HOH A 71 572 71 HOH TIP . C 3 HOH A 72 573 72 HOH TIP . C 3 HOH A 73 574 73 HOH TIP . C 3 HOH A 74 575 74 HOH TIP . C 3 HOH A 75 576 75 HOH TIP . C 3 HOH A 76 577 76 HOH TIP . C 3 HOH A 77 578 77 HOH TIP . C 3 HOH A 78 579 78 HOH TIP . C 3 HOH A 79 580 79 HOH TIP . C 3 HOH A 80 581 80 HOH TIP . C 3 HOH A 81 582 81 HOH TIP . C 3 HOH A 82 583 82 HOH TIP . C 3 HOH A 83 584 83 HOH TIP . C 3 HOH A 84 585 84 HOH TIP . C 3 HOH A 85 586 85 HOH TIP . C 3 HOH A 86 587 86 HOH TIP . C 3 HOH A 87 588 87 HOH TIP . C 3 HOH A 88 589 88 HOH TIP . C 3 HOH A 89 590 89 HOH TIP . C 3 HOH A 90 591 90 HOH TIP . C 3 HOH A 91 592 91 HOH TIP . C 3 HOH A 92 593 92 HOH TIP . C 3 HOH A 93 594 93 HOH TIP . C 3 HOH A 94 595 94 HOH TIP . C 3 HOH A 95 596 95 HOH TIP . C 3 HOH A 96 597 96 HOH TIP . C 3 HOH A 97 598 97 HOH TIP . C 3 HOH A 98 599 98 HOH TIP . C 3 HOH A 99 600 100 HOH TIP . C 3 HOH A 100 601 101 HOH TIP . C 3 HOH A 101 602 102 HOH TIP . C 3 HOH A 102 603 103 HOH TIP . C 3 HOH A 103 604 104 HOH TIP . C 3 HOH A 104 605 105 HOH TIP . C 3 HOH A 105 606 106 HOH TIP . C 3 HOH A 106 607 107 HOH TIP . C 3 HOH A 107 608 108 HOH TIP . C 3 HOH A 108 609 109 HOH TIP . C 3 HOH A 109 610 110 HOH TIP . C 3 HOH A 110 611 111 HOH TIP . C 3 HOH A 111 612 112 HOH TIP . C 3 HOH A 112 613 113 HOH TIP . C 3 HOH A 113 614 114 HOH TIP . C 3 HOH A 114 615 115 HOH TIP . C 3 HOH A 115 616 116 HOH TIP . C 3 HOH A 116 617 117 HOH TIP . C 3 HOH A 117 618 118 HOH TIP . C 3 HOH A 118 619 119 HOH TIP . C 3 HOH A 119 620 120 HOH TIP . C 3 HOH A 120 621 121 HOH TIP . C 3 HOH A 121 622 122 HOH TIP . C 3 HOH A 122 623 123 HOH TIP . C 3 HOH A 123 624 124 HOH TIP . C 3 HOH A 124 625 125 HOH TIP . C 3 HOH A 125 626 126 HOH TIP . C 3 HOH A 126 627 127 HOH TIP . C 3 HOH A 127 628 128 HOH TIP . C 3 HOH A 128 629 129 HOH TIP . C 3 HOH A 129 630 130 HOH TIP . C 3 HOH A 130 631 131 HOH TIP . C 3 HOH A 131 632 132 HOH TIP . C 3 HOH A 132 633 133 HOH TIP . C 3 HOH A 133 634 134 HOH TIP . C 3 HOH A 134 635 135 HOH TIP . C 3 HOH A 135 636 136 HOH TIP . C 3 HOH A 136 637 137 HOH TIP . C 3 HOH A 137 638 138 HOH TIP . C 3 HOH A 138 639 139 HOH TIP . C 3 HOH A 139 640 140 HOH TIP . C 3 HOH A 140 641 141 HOH TIP . C 3 HOH A 141 642 142 HOH TIP . C 3 HOH A 142 643 143 HOH TIP . C 3 HOH A 143 644 144 HOH TIP . C 3 HOH A 144 645 145 HOH TIP . C 3 HOH A 145 646 146 HOH TIP . C 3 HOH A 146 647 147 HOH TIP . C 3 HOH A 147 648 148 HOH TIP . C 3 HOH A 148 649 149 HOH TIP . C 3 HOH A 149 650 150 HOH TIP . C 3 HOH A 150 651 151 HOH TIP . C 3 HOH A 151 652 152 HOH TIP . C 3 HOH A 152 653 153 HOH TIP . C 3 HOH A 153 654 154 HOH TIP . C 3 HOH A 154 655 155 HOH TIP . C 3 HOH A 155 656 156 HOH TIP . C 3 HOH A 156 657 157 HOH TIP . C 3 HOH A 157 658 158 HOH TIP . C 3 HOH A 158 659 159 HOH TIP . C 3 HOH A 159 660 160 HOH TIP . C 3 HOH A 160 661 161 HOH TIP . C 3 HOH A 161 662 162 HOH TIP . C 3 HOH A 162 663 163 HOH TIP . C 3 HOH A 163 664 164 HOH TIP . C 3 HOH A 164 665 165 HOH TIP . C 3 HOH A 165 666 166 HOH TIP . C 3 HOH A 166 667 167 HOH TIP . C 3 HOH A 167 668 168 HOH TIP . C 3 HOH A 168 669 169 HOH TIP . C 3 HOH A 169 670 170 HOH TIP . C 3 HOH A 170 671 171 HOH TIP . C 3 HOH A 171 672 172 HOH TIP . C 3 HOH A 172 673 173 HOH TIP . C 3 HOH A 173 674 174 HOH TIP . C 3 HOH A 174 675 175 HOH TIP . C 3 HOH A 175 676 176 HOH TIP . C 3 HOH A 176 677 177 HOH TIP . C 3 HOH A 177 678 178 HOH TIP . C 3 HOH A 178 679 179 HOH TIP . C 3 HOH A 179 680 180 HOH TIP . C 3 HOH A 180 681 181 HOH TIP . C 3 HOH A 181 682 183 HOH TIP . C 3 HOH A 182 683 184 HOH TIP . C 3 HOH A 183 684 185 HOH TIP . C 3 HOH A 184 685 186 HOH TIP . C 3 HOH A 185 686 187 HOH TIP . C 3 HOH A 186 687 188 HOH TIP . C 3 HOH A 187 688 189 HOH TIP . C 3 HOH A 188 689 190 HOH TIP . C 3 HOH A 189 690 191 HOH TIP . C 3 HOH A 190 691 192 HOH TIP . C 3 HOH A 191 692 193 HOH TIP . C 3 HOH A 192 693 194 HOH TIP . C 3 HOH A 193 694 195 HOH TIP . C 3 HOH A 194 695 197 HOH TIP . C 3 HOH A 195 696 198 HOH TIP . C 3 HOH A 196 697 199 HOH TIP . C 3 HOH A 197 698 200 HOH TIP . C 3 HOH A 198 699 201 HOH TIP . C 3 HOH A 199 700 202 HOH TIP . C 3 HOH A 200 701 203 HOH TIP . C 3 HOH A 201 702 204 HOH TIP . C 3 HOH A 202 703 205 HOH TIP . C 3 HOH A 203 704 206 HOH TIP . C 3 HOH A 204 705 207 HOH TIP . C 3 HOH A 205 706 208 HOH TIP . C 3 HOH A 206 707 209 HOH TIP . C 3 HOH A 207 708 210 HOH TIP . C 3 HOH A 208 709 212 HOH TIP . C 3 HOH A 209 710 213 HOH TIP . C 3 HOH A 210 711 214 HOH TIP . C 3 HOH A 211 712 215 HOH TIP . C 3 HOH A 212 713 216 HOH TIP . C 3 HOH A 213 714 217 HOH TIP . C 3 HOH A 214 715 218 HOH TIP . C 3 HOH A 215 716 219 HOH TIP . C 3 HOH A 216 717 220 HOH TIP . C 3 HOH A 217 718 221 HOH TIP . C 3 HOH A 218 719 222 HOH TIP . C 3 HOH A 219 720 223 HOH TIP . C 3 HOH A 220 721 224 HOH TIP . C 3 HOH A 221 722 225 HOH TIP . C 3 HOH A 222 723 226 HOH TIP . C 3 HOH A 223 724 227 HOH TIP . C 3 HOH A 224 725 228 HOH TIP . C 3 HOH A 225 726 229 HOH TIP . C 3 HOH A 226 727 230 HOH TIP . C 3 HOH A 227 728 231 HOH TIP . C 3 HOH A 228 729 232 HOH TIP . C 3 HOH A 229 730 233 HOH TIP . C 3 HOH A 230 731 234 HOH TIP . C 3 HOH A 231 732 235 HOH TIP . C 3 HOH A 232 733 236 HOH TIP . C 3 HOH A 233 734 237 HOH TIP . C 3 HOH A 234 735 238 HOH TIP . C 3 HOH A 235 736 239 HOH TIP . C 3 HOH A 236 737 240 HOH TIP . C 3 HOH A 237 738 241 HOH TIP . C 3 HOH A 238 739 242 HOH TIP . C 3 HOH A 239 740 243 HOH TIP . C 3 HOH A 240 741 244 HOH TIP . C 3 HOH A 241 742 245 HOH TIP . C 3 HOH A 242 743 246 HOH TIP . C 3 HOH A 243 744 247 HOH TIP . C 3 HOH A 244 745 248 HOH TIP . C 3 HOH A 245 746 249 HOH TIP . C 3 HOH A 246 747 250 HOH TIP . C 3 HOH A 247 748 251 HOH TIP . C 3 HOH A 248 749 252 HOH TIP . C 3 HOH A 249 750 253 HOH TIP . C 3 HOH A 250 751 254 HOH TIP . C 3 HOH A 251 752 255 HOH TIP . C 3 HOH A 252 753 256 HOH TIP . C 3 HOH A 253 754 257 HOH TIP . C 3 HOH A 254 755 258 HOH TIP . C 3 HOH A 255 756 259 HOH TIP . C 3 HOH A 256 757 260 HOH TIP . C 3 HOH A 257 758 261 HOH TIP . C 3 HOH A 258 759 262 HOH TIP . C 3 HOH A 259 760 263 HOH TIP . C 3 HOH A 260 761 264 HOH TIP . C 3 HOH A 261 762 265 HOH TIP . C 3 HOH A 262 763 266 HOH TIP . C 3 HOH A 263 764 267 HOH TIP . C 3 HOH A 264 765 268 HOH TIP . C 3 HOH A 265 766 269 HOH TIP . C 3 HOH A 266 767 270 HOH TIP . C 3 HOH A 267 768 271 HOH TIP . C 3 HOH A 268 769 272 HOH TIP . C 3 HOH A 269 770 273 HOH TIP . C 3 HOH A 270 771 274 HOH TIP . C 3 HOH A 271 772 275 HOH TIP . C 3 HOH A 272 773 276 HOH TIP . C 3 HOH A 273 774 277 HOH TIP . C 3 HOH A 274 775 278 HOH TIP . C 3 HOH A 275 776 279 HOH TIP . C 3 HOH A 276 777 280 HOH TIP . C 3 HOH A 277 778 281 HOH TIP . C 3 HOH A 278 779 282 HOH TIP . C 3 HOH A 279 780 283 HOH TIP . C 3 HOH A 280 781 284 HOH TIP . C 3 HOH A 281 782 286 HOH TIP . C 3 HOH A 282 783 287 HOH TIP . C 3 HOH A 283 784 288 HOH TIP . C 3 HOH A 284 785 289 HOH TIP . C 3 HOH A 285 786 290 HOH TIP . C 3 HOH A 286 787 291 HOH TIP . C 3 HOH A 287 788 292 HOH TIP . C 3 HOH A 288 789 293 HOH TIP . C 3 HOH A 289 790 294 HOH TIP . C 3 HOH A 290 791 296 HOH TIP . C 3 HOH A 291 792 297 HOH TIP . C 3 HOH A 292 793 299 HOH TIP . C 3 HOH A 293 794 300 HOH TIP . C 3 HOH A 294 795 301 HOH TIP . C 3 HOH A 295 796 303 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OXT AZY . . . B 2 4.759 28.479 15.596 1 16.17 ? OXT AZY 501 A 1 HETATM 2 C C AZY . . . B 2 5.471 28.307 16.608 1 17.89 ? C AZY 501 A 1 HETATM 3 O O AZY . . . B 2 5.074 28.195 17.788 1 18.64 ? O AZY 501 A 1 HETATM 4 C CA AZY . . . B 2 6.984 28.237 16.396 1 15.42 ? CA AZY 501 A 1 HETATM 5 N N AZY . . . B 2 7.289 27.745 15.043 1 15.7 ? N AZY 501 A 1 HETATM 6 C CB AZY . . . B 2 7.566 29.639 16.597 1 13.57 ? CB AZY 501 A 1 HETATM 7 C CG AZY . . . B 2 9.097 29.598 16.568 1 13.4 ? CG AZY 501 A 1 HETATM 8 C CD2 AZY . . . B 2 9.782 28.93 17.578 1 15.84 ? CD2 AZY 501 A 1 HETATM 9 C CD1 AZY . . . B 2 9.795 30.166 15.505 1 12.45 ? CD1 AZY 501 A 1 HETATM 10 C CE1 AZY . . . B 2 11.182 30.045 15.453 1 14.59 ? CE1 AZY 501 A 1 HETATM 11 C CZ AZY . . . B 2 11.864 29.364 16.457 1 14.81 ? CZ AZY 501 A 1 HETATM 12 O OH AZY . . . B 2 13.212 29.197 16.376 1 15.71 ? OH AZY 501 A 1 HETATM 13 C CE2 AZY . . . B 2 11.168 28.809 17.528 1 18.13 ? CE2 AZY 501 A 1 HETATM 14 N N1 AZY . . . B 2 11.802 28.177 18.515 1 21.17 ? N1 AZY 501 A 1 HETATM 15 N N2 AZY . . . B 2 12.916 28.042 18.527 1 37.34 ? N2 AZY 501 A 1 HETATM 16 N N3 AZY . . . B 2 14.028 27.898 18.545 1 41.37 ? N3 AZY 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #