data_2YY2 # _model_server_result.job_id xmRqZQAvCVCrPSJIzXA5sw _model_server_result.datetime_utc '2025-02-17 04:00:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yy2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1105}' # _entry.id 2YY2 # _exptl.entry_id 2YY2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.244 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-ISOBUTYL-1-METHYLXANTHINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YY2 _cell.length_a 104.27 _cell.length_b 104.27 _cell.length_c 269.61 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ZN ZN . A ZN 101 1_555 A NE2 HIS 83 A HIS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc2 C ZN ZN . A ZN 101 1_555 A NE2 HIS 119 A HIS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 F ZN ZN . B ZN 103 1_555 B NE2 HIS 119 B HIS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? # _chem_comp.formula 'C10 H14 N4 O2' _chem_comp.formula_weight 222.244 _chem_comp.id IBM _chem_comp.mon_nstd_flag . _chem_comp.name 3-ISOBUTYL-1-METHYLXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 IBM sing 152 n y N9 C4 IBM sing 153 n y N9 HN9 IBM sing 154 n n C8 N7 IBM doub 155 n y C8 H8 IBM sing 156 n n N7 C5 IBM sing 157 n y C5 C4 IBM doub 158 n y C5 C6 IBM sing 159 n y C4 N3 IBM sing 160 n y N3 C2 IBM sing 161 n y N3 C11 IBM sing 162 n n C2 N1 IBM sing 163 n y C2 O2 IBM doub 164 n n N1 C6 IBM sing 165 n y N1 C10 IBM sing 166 n n C6 O6 IBM doub 167 n n C10 H101 IBM sing 168 n n C10 H102 IBM sing 169 n n C10 H103 IBM sing 170 n n C11 C12 IBM sing 171 n n C11 H111 IBM sing 172 n n C11 H112 IBM sing 173 n n C12 C13 IBM sing 174 n n C12 C14 IBM sing 175 n n C12 H12 IBM sing 176 n n C13 H131 IBM sing 177 n n C13 H132 IBM sing 178 n n C13 H133 IBM sing 179 n n C14 H141 IBM sing 180 n n C14 H142 IBM sing 181 n n C14 H143 IBM sing 182 n n # _atom_sites.entry_id 2YY2 _atom_sites.fract_transf_matrix[1][1] 0.00959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 101 101 ZN ZN . D 3 MG A 1 1102 102 MG MG . E 4 IBM A 1 1103 201 IBM IBM . F 2 ZN B 1 103 103 ZN ZN . G 3 MG B 1 1104 104 MG MG . H 4 IBM B 1 1105 301 IBM IBM . I 5 HOH A 1 1104 1 HOH HOH . I 5 HOH A 2 1105 2 HOH HOH . I 5 HOH A 3 1106 3 HOH HOH . I 5 HOH A 4 1107 4 HOH HOH . I 5 HOH A 5 1108 5 HOH HOH . I 5 HOH A 6 1109 6 HOH HOH . I 5 HOH A 7 1110 7 HOH HOH . I 5 HOH A 8 1111 8 HOH HOH . I 5 HOH A 9 1112 9 HOH HOH . I 5 HOH A 10 1113 10 HOH HOH . I 5 HOH A 11 1114 12 HOH HOH . I 5 HOH A 12 1115 13 HOH HOH . I 5 HOH A 13 1116 16 HOH HOH . I 5 HOH A 14 1117 17 HOH HOH . I 5 HOH A 15 1118 18 HOH HOH . I 5 HOH A 16 1119 19 HOH HOH . I 5 HOH A 17 1120 20 HOH HOH . I 5 HOH A 18 1121 21 HOH HOH . I 5 HOH A 19 1122 22 HOH HOH . I 5 HOH A 20 1123 23 HOH HOH . I 5 HOH A 21 1124 24 HOH HOH . I 5 HOH A 22 1125 25 HOH HOH . I 5 HOH A 23 1126 26 HOH HOH . I 5 HOH A 24 1127 27 HOH HOH . I 5 HOH A 25 1128 28 HOH HOH . I 5 HOH A 26 1129 59 HOH HOH . I 5 HOH A 27 1130 60 HOH HOH . I 5 HOH A 28 1131 61 HOH HOH . I 5 HOH A 29 1132 62 HOH HOH . I 5 HOH A 30 1133 63 HOH HOH . I 5 HOH A 31 1134 64 HOH HOH . I 5 HOH A 32 1135 65 HOH HOH . I 5 HOH A 33 1136 66 HOH HOH . I 5 HOH A 34 1137 95 HOH HOH . I 5 HOH A 35 1138 97 HOH HOH . J 5 HOH B 1 1106 11 HOH HOH . J 5 HOH B 2 1107 14 HOH HOH . J 5 HOH B 3 1108 15 HOH HOH . J 5 HOH B 4 1109 29 HOH HOH . J 5 HOH B 5 1110 30 HOH HOH . J 5 HOH B 6 1111 31 HOH HOH . J 5 HOH B 7 1112 32 HOH HOH . J 5 HOH B 8 1113 33 HOH HOH . J 5 HOH B 9 1114 34 HOH HOH . J 5 HOH B 10 1115 35 HOH HOH . J 5 HOH B 11 1116 36 HOH HOH . J 5 HOH B 12 1117 37 HOH HOH . J 5 HOH B 13 1118 38 HOH HOH . J 5 HOH B 14 1119 39 HOH HOH . J 5 HOH B 15 1120 40 HOH HOH . J 5 HOH B 16 1121 41 HOH HOH . J 5 HOH B 17 1122 42 HOH HOH . J 5 HOH B 18 1123 43 HOH HOH . J 5 HOH B 19 1124 44 HOH HOH . J 5 HOH B 20 1125 45 HOH HOH . J 5 HOH B 21 1126 46 HOH HOH . J 5 HOH B 22 1127 47 HOH HOH . J 5 HOH B 23 1128 48 HOH HOH . J 5 HOH B 24 1129 49 HOH HOH . J 5 HOH B 25 1130 50 HOH HOH . J 5 HOH B 26 1131 51 HOH HOH . J 5 HOH B 27 1132 52 HOH HOH . J 5 HOH B 28 1133 53 HOH HOH . J 5 HOH B 29 1134 54 HOH HOH . J 5 HOH B 30 1135 55 HOH HOH . J 5 HOH B 31 1136 56 HOH HOH . J 5 HOH B 32 1137 57 HOH HOH . J 5 HOH B 33 1138 58 HOH HOH . J 5 HOH B 34 1139 67 HOH HOH . J 5 HOH B 35 1140 68 HOH HOH . J 5 HOH B 36 1141 69 HOH HOH . J 5 HOH B 37 1142 70 HOH HOH . J 5 HOH B 38 1143 71 HOH HOH . J 5 HOH B 39 1144 72 HOH HOH . J 5 HOH B 40 1145 73 HOH HOH . J 5 HOH B 41 1146 74 HOH HOH . J 5 HOH B 42 1147 75 HOH HOH . J 5 HOH B 43 1148 76 HOH HOH . J 5 HOH B 44 1149 77 HOH HOH . J 5 HOH B 45 1150 78 HOH HOH . J 5 HOH B 46 1151 79 HOH HOH . J 5 HOH B 47 1152 80 HOH HOH . J 5 HOH B 48 1153 81 HOH HOH . J 5 HOH B 49 1154 82 HOH HOH . J 5 HOH B 50 1155 83 HOH HOH . J 5 HOH B 51 1156 84 HOH HOH . J 5 HOH B 52 1157 85 HOH HOH . J 5 HOH B 53 1158 86 HOH HOH . J 5 HOH B 54 1159 87 HOH HOH . J 5 HOH B 55 1160 88 HOH HOH . J 5 HOH B 56 1161 89 HOH HOH . J 5 HOH B 57 1162 90 HOH HOH . J 5 HOH B 58 1163 91 HOH HOH . J 5 HOH B 59 1164 92 HOH HOH . J 5 HOH B 60 1165 93 HOH HOH . J 5 HOH B 61 1166 94 HOH HOH . J 5 HOH B 62 1167 96 HOH HOH . J 5 HOH B 63 1168 98 HOH HOH . J 5 HOH B 64 1169 99 HOH HOH . J 5 HOH B 65 1170 100 HOH HOH . J 5 HOH B 66 1171 101 HOH HOH . J 5 HOH B 67 1172 102 HOH HOH . J 5 HOH B 68 1173 103 HOH HOH . J 5 HOH B 69 1174 104 HOH HOH . J 5 HOH B 70 1175 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 IBM . . . H 4 97.517 19.417 12.501 1 33.31 ? N9 IBM 1105 B 1 HETATM 2 C C8 IBM . . . H 4 97.826 19.074 11.216 1 32.94 ? C8 IBM 1105 B 1 HETATM 3 N N7 IBM . . . H 4 97.588 20.077 10.428 1 32.31 ? N7 IBM 1105 B 1 HETATM 4 C C5 IBM . . . H 4 97.119 21.104 11.154 1 32.47 ? C5 IBM 1105 B 1 HETATM 5 C C4 IBM . . . H 4 97.067 20.696 12.491 1 32.68 ? C4 IBM 1105 B 1 HETATM 6 N N3 IBM . . . H 4 96.613 21.581 13.48 1 33.53 ? N3 IBM 1105 B 1 HETATM 7 C C2 IBM . . . H 4 96.211 22.862 13.147 1 34.2 ? C2 IBM 1105 B 1 HETATM 8 N N1 IBM . . . H 4 96.246 23.299 11.849 1 35.16 ? N1 IBM 1105 B 1 HETATM 9 C C6 IBM . . . H 4 96.69 22.464 10.827 1 34.76 ? C6 IBM 1105 B 1 HETATM 10 O O6 IBM . . . H 4 96.731 22.837 9.66 1 35.96 ? O6 IBM 1105 B 1 HETATM 11 O O2 IBM . . . H 4 95.817 23.623 14.032 1 32.83 ? O2 IBM 1105 B 1 HETATM 12 C C10 IBM . . . H 4 95.811 24.679 11.528 1 37.08 ? C10 IBM 1105 B 1 HETATM 13 C C11 IBM . . . H 4 96.581 21.125 14.9 1 33.23 ? C11 IBM 1105 B 1 HETATM 14 C C12 IBM . . . H 4 95.446 20.138 15.218 1 34.82 ? C12 IBM 1105 B 1 HETATM 15 C C13 IBM . . . H 4 95.574 19.763 16.684 1 35.96 ? C13 IBM 1105 B 1 HETATM 16 C C14 IBM . . . H 4 94.064 20.783 15.021 1 35.86 ? C14 IBM 1105 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #