data_2YYE # _model_server_result.job_id T06D5Ufd3RvrvRDRDy54cA _model_server_result.datetime_utc '2025-07-07 22:58:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 2YYE # _exptl.entry_id 2YYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2YYE _cell.length_a 80.536 _cell.length_b 80.536 _cell.length_c 160.641 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 112 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 103 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 22 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 13 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.956 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2YYE _atom_sites.fract_transf_matrix[1][1] 0.012417 _atom_sites.fract_transf_matrix[1][2] 0.007169 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 702 702 CO CO . D 2 CO A 1 703 703 CO CO . E 2 CO A 1 704 704 CO CO . F 2 CO A 1 705 705 CO CO . G 2 CO A 1 801 801 CO CO . H 3 APC A 1 501 501 APC APC . I 2 CO B 1 701 701 CO CO . J 2 CO B 1 802 802 CO CO . K 2 CO B 1 803 803 CO CO . L 2 CO B 1 804 804 CO CO . M 2 CO B 1 805 805 CO CO . N 4 PO4 B 1 901 901 PO4 PO4 . O 3 APC B 1 601 601 APC APC . P 5 HOH A 1 802 2 HOH HOH . P 5 HOH A 2 803 3 HOH HOH . P 5 HOH A 3 804 7 HOH HOH . P 5 HOH A 4 805 10 HOH HOH . P 5 HOH A 5 806 14 HOH HOH . P 5 HOH A 6 807 15 HOH HOH . P 5 HOH A 7 808 18 HOH HOH . P 5 HOH A 8 809 21 HOH HOH . P 5 HOH A 9 810 24 HOH HOH . P 5 HOH A 10 811 26 HOH HOH . P 5 HOH A 11 812 27 HOH HOH . P 5 HOH A 12 813 29 HOH HOH . P 5 HOH A 13 814 31 HOH HOH . P 5 HOH A 14 815 32 HOH HOH . P 5 HOH A 15 816 33 HOH HOH . P 5 HOH A 16 817 36 HOH HOH . P 5 HOH A 17 818 39 HOH HOH . P 5 HOH A 18 819 42 HOH HOH . P 5 HOH A 19 820 43 HOH HOH . P 5 HOH A 20 821 44 HOH HOH . P 5 HOH A 21 822 45 HOH HOH . P 5 HOH A 22 823 46 HOH HOH . P 5 HOH A 23 824 47 HOH HOH . P 5 HOH A 24 825 49 HOH HOH . P 5 HOH A 25 826 52 HOH HOH . P 5 HOH A 26 827 53 HOH HOH . P 5 HOH A 27 828 54 HOH HOH . P 5 HOH A 28 829 56 HOH HOH . P 5 HOH A 29 830 57 HOH HOH . P 5 HOH A 30 831 58 HOH HOH . P 5 HOH A 31 832 63 HOH HOH . P 5 HOH A 32 833 64 HOH HOH . P 5 HOH A 33 834 66 HOH HOH . P 5 HOH A 34 835 70 HOH HOH . P 5 HOH A 35 836 73 HOH HOH . P 5 HOH A 36 837 77 HOH HOH . P 5 HOH A 37 838 78 HOH HOH . P 5 HOH A 38 839 82 HOH HOH . P 5 HOH A 39 840 83 HOH HOH . P 5 HOH A 40 841 88 HOH HOH . P 5 HOH A 41 842 89 HOH HOH . P 5 HOH A 42 843 93 HOH HOH . P 5 HOH A 43 844 95 HOH HOH . P 5 HOH A 44 845 98 HOH HOH . P 5 HOH A 45 846 99 HOH HOH . P 5 HOH A 46 847 100 HOH HOH . P 5 HOH A 47 848 102 HOH HOH . P 5 HOH A 48 849 104 HOH HOH . P 5 HOH A 49 850 105 HOH HOH . P 5 HOH A 50 851 106 HOH HOH . P 5 HOH A 51 852 110 HOH HOH . P 5 HOH A 52 853 114 HOH HOH . P 5 HOH A 53 854 115 HOH HOH . P 5 HOH A 54 855 117 HOH HOH . P 5 HOH A 55 856 121 HOH HOH . P 5 HOH A 56 857 122 HOH HOH . P 5 HOH A 57 858 125 HOH HOH . P 5 HOH A 58 859 127 HOH HOH . P 5 HOH A 59 860 129 HOH HOH . P 5 HOH A 60 861 130 HOH HOH . P 5 HOH A 61 862 134 HOH HOH . P 5 HOH A 62 863 135 HOH HOH . P 5 HOH A 63 864 136 HOH HOH . P 5 HOH A 64 865 137 HOH HOH . P 5 HOH A 65 866 139 HOH HOH . P 5 HOH A 66 867 142 HOH HOH . P 5 HOH A 67 868 143 HOH HOH . P 5 HOH A 68 869 144 HOH HOH . P 5 HOH A 69 870 145 HOH HOH . P 5 HOH A 70 871 146 HOH HOH . P 5 HOH A 71 872 149 HOH HOH . P 5 HOH A 72 873 150 HOH HOH . P 5 HOH A 73 874 155 HOH HOH . P 5 HOH A 74 875 157 HOH HOH . P 5 HOH A 75 876 159 HOH HOH . P 5 HOH A 76 877 160 HOH HOH . P 5 HOH A 77 878 167 HOH HOH . P 5 HOH A 78 879 168 HOH HOH . P 5 HOH A 79 880 173 HOH HOH . P 5 HOH A 80 881 174 HOH HOH . P 5 HOH A 81 882 175 HOH HOH . P 5 HOH A 82 883 176 HOH HOH . P 5 HOH A 83 884 179 HOH HOH . P 5 HOH A 84 885 186 HOH HOH . P 5 HOH A 85 886 187 HOH HOH . P 5 HOH A 86 887 191 HOH HOH . P 5 HOH A 87 888 192 HOH HOH . P 5 HOH A 88 889 195 HOH HOH . P 5 HOH A 89 890 196 HOH HOH . P 5 HOH A 90 891 197 HOH HOH . P 5 HOH A 91 892 198 HOH HOH . P 5 HOH A 92 893 199 HOH HOH . P 5 HOH A 93 894 206 HOH HOH . P 5 HOH A 94 895 207 HOH HOH . P 5 HOH A 95 896 208 HOH HOH . P 5 HOH A 96 897 210 HOH HOH . P 5 HOH A 97 898 216 HOH HOH . P 5 HOH A 98 899 217 HOH HOH . P 5 HOH A 99 900 219 HOH HOH . P 5 HOH A 100 901 220 HOH HOH . P 5 HOH A 101 902 223 HOH HOH . P 5 HOH A 102 903 226 HOH HOH . P 5 HOH A 103 904 227 HOH HOH . P 5 HOH A 104 905 228 HOH HOH . P 5 HOH A 105 906 229 HOH HOH . P 5 HOH A 106 907 233 HOH HOH . P 5 HOH A 107 908 235 HOH HOH . P 5 HOH A 108 909 236 HOH HOH . P 5 HOH A 109 910 237 HOH HOH . P 5 HOH A 110 911 238 HOH HOH . P 5 HOH A 111 912 240 HOH HOH . P 5 HOH A 112 913 242 HOH HOH . P 5 HOH A 113 914 245 HOH HOH . P 5 HOH A 114 915 246 HOH HOH . P 5 HOH A 115 916 249 HOH HOH . P 5 HOH A 116 917 253 HOH HOH . P 5 HOH A 117 918 255 HOH HOH . P 5 HOH A 118 919 256 HOH HOH . P 5 HOH A 119 920 258 HOH HOH . P 5 HOH A 120 921 259 HOH HOH . P 5 HOH A 121 922 260 HOH HOH . P 5 HOH A 122 923 262 HOH HOH . P 5 HOH A 123 924 265 HOH HOH . P 5 HOH A 124 925 266 HOH HOH . P 5 HOH A 125 926 268 HOH HOH . P 5 HOH A 126 927 271 HOH HOH . P 5 HOH A 127 928 274 HOH HOH . P 5 HOH A 128 929 276 HOH HOH . P 5 HOH A 129 930 277 HOH HOH . P 5 HOH A 130 931 278 HOH HOH . P 5 HOH A 131 932 279 HOH HOH . P 5 HOH A 132 950 90 HOH HOH . P 5 HOH A 133 998 180 HOH HOH . Q 5 HOH B 1 902 1 HOH HOH . Q 5 HOH B 2 903 4 HOH HOH . Q 5 HOH B 3 904 5 HOH HOH . Q 5 HOH B 4 905 6 HOH HOH . Q 5 HOH B 5 906 8 HOH HOH . Q 5 HOH B 6 907 9 HOH HOH . Q 5 HOH B 7 908 11 HOH HOH . Q 5 HOH B 8 909 12 HOH HOH . Q 5 HOH B 9 910 13 HOH HOH . Q 5 HOH B 10 911 16 HOH HOH . Q 5 HOH B 11 912 17 HOH HOH . Q 5 HOH B 12 913 19 HOH HOH . Q 5 HOH B 13 914 20 HOH HOH . Q 5 HOH B 14 915 22 HOH HOH . Q 5 HOH B 15 916 23 HOH HOH . Q 5 HOH B 16 917 25 HOH HOH . Q 5 HOH B 17 918 28 HOH HOH . Q 5 HOH B 18 919 30 HOH HOH . Q 5 HOH B 19 920 34 HOH HOH . Q 5 HOH B 20 921 35 HOH HOH . Q 5 HOH B 21 922 37 HOH HOH . Q 5 HOH B 22 923 38 HOH HOH . Q 5 HOH B 23 924 40 HOH HOH . Q 5 HOH B 24 925 41 HOH HOH . Q 5 HOH B 25 926 48 HOH HOH . Q 5 HOH B 26 927 50 HOH HOH . Q 5 HOH B 27 928 51 HOH HOH . Q 5 HOH B 28 929 55 HOH HOH . Q 5 HOH B 29 930 59 HOH HOH . Q 5 HOH B 30 931 60 HOH HOH . Q 5 HOH B 31 932 61 HOH HOH . Q 5 HOH B 32 933 62 HOH HOH . Q 5 HOH B 33 934 65 HOH HOH . Q 5 HOH B 34 935 67 HOH HOH . Q 5 HOH B 35 936 68 HOH HOH . Q 5 HOH B 36 937 69 HOH HOH . Q 5 HOH B 37 938 71 HOH HOH . Q 5 HOH B 38 939 72 HOH HOH . Q 5 HOH B 39 940 74 HOH HOH . Q 5 HOH B 40 941 75 HOH HOH . Q 5 HOH B 41 942 76 HOH HOH . Q 5 HOH B 42 943 79 HOH HOH . Q 5 HOH B 43 944 80 HOH HOH . Q 5 HOH B 44 945 81 HOH HOH . Q 5 HOH B 45 946 84 HOH HOH . Q 5 HOH B 46 947 85 HOH HOH . Q 5 HOH B 47 948 86 HOH HOH . Q 5 HOH B 48 949 87 HOH HOH . Q 5 HOH B 49 951 91 HOH HOH . Q 5 HOH B 50 952 92 HOH HOH . Q 5 HOH B 51 953 94 HOH HOH . Q 5 HOH B 52 954 96 HOH HOH . Q 5 HOH B 53 955 97 HOH HOH . Q 5 HOH B 54 956 101 HOH HOH . Q 5 HOH B 55 957 103 HOH HOH . Q 5 HOH B 56 958 107 HOH HOH . Q 5 HOH B 57 959 108 HOH HOH . Q 5 HOH B 58 960 109 HOH HOH . Q 5 HOH B 59 961 111 HOH HOH . Q 5 HOH B 60 962 112 HOH HOH . Q 5 HOH B 61 963 113 HOH HOH . Q 5 HOH B 62 964 116 HOH HOH . Q 5 HOH B 63 965 118 HOH HOH . Q 5 HOH B 64 966 119 HOH HOH . Q 5 HOH B 65 967 120 HOH HOH . Q 5 HOH B 66 968 123 HOH HOH . Q 5 HOH B 67 969 124 HOH HOH . Q 5 HOH B 68 970 126 HOH HOH . Q 5 HOH B 69 971 128 HOH HOH . Q 5 HOH B 70 972 131 HOH HOH . Q 5 HOH B 71 973 132 HOH HOH . Q 5 HOH B 72 974 133 HOH HOH . Q 5 HOH B 73 975 138 HOH HOH . Q 5 HOH B 74 976 140 HOH HOH . Q 5 HOH B 75 977 141 HOH HOH . Q 5 HOH B 76 978 147 HOH HOH . Q 5 HOH B 77 979 148 HOH HOH . Q 5 HOH B 78 980 151 HOH HOH . Q 5 HOH B 79 981 152 HOH HOH . Q 5 HOH B 80 982 153 HOH HOH . Q 5 HOH B 81 983 154 HOH HOH . Q 5 HOH B 82 984 156 HOH HOH . Q 5 HOH B 83 985 158 HOH HOH . Q 5 HOH B 84 986 161 HOH HOH . Q 5 HOH B 85 987 162 HOH HOH . Q 5 HOH B 86 988 163 HOH HOH . Q 5 HOH B 87 989 164 HOH HOH . Q 5 HOH B 88 990 165 HOH HOH . Q 5 HOH B 89 991 166 HOH HOH . Q 5 HOH B 90 992 169 HOH HOH . Q 5 HOH B 91 993 170 HOH HOH . Q 5 HOH B 92 994 171 HOH HOH . Q 5 HOH B 93 995 172 HOH HOH . Q 5 HOH B 94 996 177 HOH HOH . Q 5 HOH B 95 997 178 HOH HOH . Q 5 HOH B 96 999 181 HOH HOH . Q 5 HOH B 97 1000 182 HOH HOH . Q 5 HOH B 98 1001 183 HOH HOH . Q 5 HOH B 99 1002 184 HOH HOH . Q 5 HOH B 100 1003 185 HOH HOH . Q 5 HOH B 101 1004 188 HOH HOH . Q 5 HOH B 102 1005 189 HOH HOH . Q 5 HOH B 103 1006 190 HOH HOH . Q 5 HOH B 104 1007 193 HOH HOH . Q 5 HOH B 105 1008 194 HOH HOH . Q 5 HOH B 106 1009 200 HOH HOH . Q 5 HOH B 107 1010 201 HOH HOH . Q 5 HOH B 108 1011 202 HOH HOH . Q 5 HOH B 109 1012 203 HOH HOH . Q 5 HOH B 110 1013 204 HOH HOH . Q 5 HOH B 111 1014 205 HOH HOH . Q 5 HOH B 112 1015 209 HOH HOH . Q 5 HOH B 113 1016 211 HOH HOH . Q 5 HOH B 114 1017 212 HOH HOH . Q 5 HOH B 115 1018 213 HOH HOH . Q 5 HOH B 116 1019 214 HOH HOH . Q 5 HOH B 117 1020 215 HOH HOH . Q 5 HOH B 118 1021 218 HOH HOH . Q 5 HOH B 119 1022 221 HOH HOH . Q 5 HOH B 120 1023 222 HOH HOH . Q 5 HOH B 121 1024 224 HOH HOH . Q 5 HOH B 122 1025 225 HOH HOH . Q 5 HOH B 123 1026 230 HOH HOH . Q 5 HOH B 124 1027 231 HOH HOH . Q 5 HOH B 125 1028 232 HOH HOH . Q 5 HOH B 126 1029 234 HOH HOH . Q 5 HOH B 127 1030 239 HOH HOH . Q 5 HOH B 128 1031 241 HOH HOH . Q 5 HOH B 129 1032 243 HOH HOH . Q 5 HOH B 130 1033 244 HOH HOH . Q 5 HOH B 131 1034 247 HOH HOH . Q 5 HOH B 132 1035 248 HOH HOH . Q 5 HOH B 133 1036 250 HOH HOH . Q 5 HOH B 134 1037 251 HOH HOH . Q 5 HOH B 135 1038 252 HOH HOH . Q 5 HOH B 136 1039 254 HOH HOH . Q 5 HOH B 137 1040 257 HOH HOH . Q 5 HOH B 138 1041 261 HOH HOH . Q 5 HOH B 139 1042 263 HOH HOH . Q 5 HOH B 140 1043 264 HOH HOH . Q 5 HOH B 141 1044 267 HOH HOH . Q 5 HOH B 142 1045 269 HOH HOH . Q 5 HOH B 143 1046 270 HOH HOH . Q 5 HOH B 144 1047 272 HOH HOH . Q 5 HOH B 145 1048 273 HOH HOH . Q 5 HOH B 146 1049 275 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 55.531 _atom_site.Cartn_y 1.245 _atom_site.Cartn_z 80.581 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #