data_2YZ3 # _model_server_result.job_id rMCQVJeYkO2uhwiNNKHrrA _model_server_result.datetime_utc '2024-11-24 20:37:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 2YZ3 # _exptl.entry_id 2YZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YZ3 _cell.length_a 45.184 _cell.length_b 90.749 _cell.length_c 128.977 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 114 A HIS 94 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc2 A ND1 HIS 116 A HIS 96 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc3 A OD1 ASP 118 A ASP 98 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc4 A NE2 HIS 179 A HIS 159 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc5 A SG CYS 198 A CYS 178 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc6 A NE2 HIS 240 A HIS 220 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 C ZN ZN . A ZN 301 1_555 G S1 M5P . A M5P 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 D ZN ZN . A ZN 302 1_555 G S1 M5P . A M5P 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc9 B NE2 HIS 114 B HIS 94 1_555 H ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc10 B ND1 HIS 116 B HIS 96 1_555 H ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc11 B OD1 ASP 118 B ASP 98 1_555 I ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc12 B NE2 HIS 179 B HIS 159 1_555 H ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc13 B SG CYS 198 B CYS 178 1_555 I ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc14 B NE2 HIS 240 B HIS 220 1_555 I ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc15 H ZN ZN . B ZN 303 1_555 L S1 M5P . B M5P 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc16 I ZN ZN . B ZN 304 1_555 L S1 M5P . B M5P 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2YZ3 _atom_sites.fract_transf_matrix[1][1] 0.022132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 301 ZN ZN . D 2 ZN A 1 302 302 ZN ZN . E 3 SO4 A 1 502 502 SO4 SO4 . F 3 SO4 A 1 503 503 SO4 SO4 . G 4 M5P A 1 401 401 M5P C3S . H 2 ZN B 1 303 303 ZN ZN . I 2 ZN B 1 304 304 ZN ZN . J 3 SO4 B 1 501 501 SO4 SO4 . K 3 SO4 B 1 504 504 SO4 SO4 . L 4 M5P B 1 402 402 M5P C3S . M 5 HOH A 1 504 602 HOH HOH . M 5 HOH A 2 505 603 HOH HOH . M 5 HOH A 3 506 608 HOH HOH . M 5 HOH A 4 507 611 HOH HOH . M 5 HOH A 5 508 613 HOH HOH . M 5 HOH A 6 509 619 HOH HOH . M 5 HOH A 7 510 620 HOH HOH . M 5 HOH A 8 511 621 HOH HOH . M 5 HOH A 9 512 622 HOH HOH . M 5 HOH A 10 513 628 HOH HOH . M 5 HOH A 11 514 629 HOH HOH . M 5 HOH A 12 515 630 HOH HOH . M 5 HOH A 13 516 632 HOH HOH . M 5 HOH A 14 517 634 HOH HOH . M 5 HOH A 15 518 636 HOH HOH . M 5 HOH A 16 519 638 HOH HOH . M 5 HOH A 17 520 640 HOH HOH . M 5 HOH A 18 521 641 HOH HOH . M 5 HOH A 19 522 644 HOH HOH . M 5 HOH A 20 523 645 HOH HOH . M 5 HOH A 21 524 651 HOH HOH . M 5 HOH A 22 525 655 HOH HOH . M 5 HOH A 23 526 657 HOH HOH . M 5 HOH A 24 527 659 HOH HOH . M 5 HOH A 25 528 661 HOH HOH . M 5 HOH A 26 529 664 HOH HOH . M 5 HOH A 27 530 666 HOH HOH . M 5 HOH A 28 531 669 HOH HOH . M 5 HOH A 29 532 670 HOH HOH . M 5 HOH A 30 533 671 HOH HOH . M 5 HOH A 31 534 673 HOH HOH . M 5 HOH A 32 535 678 HOH HOH . M 5 HOH A 33 536 680 HOH HOH . M 5 HOH A 34 537 688 HOH HOH . M 5 HOH A 35 538 689 HOH HOH . M 5 HOH A 36 539 690 HOH HOH . M 5 HOH A 37 540 696 HOH HOH . M 5 HOH A 38 541 698 HOH HOH . M 5 HOH A 39 542 705 HOH HOH . M 5 HOH A 40 543 706 HOH HOH . M 5 HOH A 41 544 707 HOH HOH . M 5 HOH A 42 545 711 HOH HOH . M 5 HOH A 43 546 714 HOH HOH . M 5 HOH A 44 547 715 HOH HOH . M 5 HOH A 45 548 716 HOH HOH . M 5 HOH A 46 549 718 HOH HOH . M 5 HOH A 47 550 720 HOH HOH . M 5 HOH A 48 551 723 HOH HOH . M 5 HOH A 49 552 724 HOH HOH . M 5 HOH A 50 553 725 HOH HOH . M 5 HOH A 51 554 726 HOH HOH . M 5 HOH A 52 555 728 HOH HOH . M 5 HOH A 53 556 733 HOH HOH . M 5 HOH A 54 557 740 HOH HOH . M 5 HOH A 55 558 741 HOH HOH . M 5 HOH A 56 559 742 HOH HOH . M 5 HOH A 57 560 744 HOH HOH . M 5 HOH A 58 561 746 HOH HOH . M 5 HOH A 59 562 750 HOH HOH . M 5 HOH A 60 563 751 HOH HOH . M 5 HOH A 61 564 752 HOH HOH . M 5 HOH A 62 565 756 HOH HOH . M 5 HOH A 63 566 759 HOH HOH . M 5 HOH A 64 567 763 HOH HOH . M 5 HOH A 65 568 764 HOH HOH . M 5 HOH A 66 569 765 HOH HOH . M 5 HOH A 67 570 767 HOH HOH . M 5 HOH A 68 571 770 HOH HOH . M 5 HOH A 69 572 771 HOH HOH . M 5 HOH A 70 573 772 HOH HOH . M 5 HOH A 71 574 773 HOH HOH . M 5 HOH A 72 575 774 HOH HOH . M 5 HOH A 73 576 775 HOH HOH . M 5 HOH A 74 577 782 HOH HOH . M 5 HOH A 75 578 783 HOH HOH . M 5 HOH A 76 579 791 HOH HOH . M 5 HOH A 77 580 795 HOH HOH . M 5 HOH A 78 581 796 HOH HOH . M 5 HOH A 79 582 797 HOH HOH . M 5 HOH A 80 583 799 HOH HOH . M 5 HOH A 81 584 800 HOH HOH . M 5 HOH A 82 585 801 HOH HOH . M 5 HOH A 83 586 802 HOH HOH . M 5 HOH A 84 587 804 HOH HOH . M 5 HOH A 85 588 805 HOH HOH . M 5 HOH A 86 589 807 HOH HOH . M 5 HOH A 87 590 809 HOH HOH . M 5 HOH A 88 591 811 HOH HOH . M 5 HOH A 89 592 812 HOH HOH . N 5 HOH B 1 505 601 HOH HOH . N 5 HOH B 2 506 604 HOH HOH . N 5 HOH B 3 507 605 HOH HOH . N 5 HOH B 4 508 606 HOH HOH . N 5 HOH B 5 509 607 HOH HOH . N 5 HOH B 6 510 609 HOH HOH . N 5 HOH B 7 511 610 HOH HOH . N 5 HOH B 8 512 612 HOH HOH . N 5 HOH B 9 513 614 HOH HOH . N 5 HOH B 10 514 615 HOH HOH . N 5 HOH B 11 515 616 HOH HOH . N 5 HOH B 12 516 617 HOH HOH . N 5 HOH B 13 517 618 HOH HOH . N 5 HOH B 14 518 623 HOH HOH . N 5 HOH B 15 519 624 HOH HOH . N 5 HOH B 16 520 625 HOH HOH . N 5 HOH B 17 521 626 HOH HOH . N 5 HOH B 18 522 627 HOH HOH . N 5 HOH B 19 523 631 HOH HOH . N 5 HOH B 20 524 633 HOH HOH . N 5 HOH B 21 525 635 HOH HOH . N 5 HOH B 22 526 637 HOH HOH . N 5 HOH B 23 527 639 HOH HOH . N 5 HOH B 24 528 642 HOH HOH . N 5 HOH B 25 529 643 HOH HOH . N 5 HOH B 26 530 646 HOH HOH . N 5 HOH B 27 531 647 HOH HOH . N 5 HOH B 28 532 648 HOH HOH . N 5 HOH B 29 533 649 HOH HOH . N 5 HOH B 30 534 650 HOH HOH . N 5 HOH B 31 535 652 HOH HOH . N 5 HOH B 32 536 653 HOH HOH . N 5 HOH B 33 537 654 HOH HOH . N 5 HOH B 34 538 656 HOH HOH . N 5 HOH B 35 539 658 HOH HOH . N 5 HOH B 36 540 660 HOH HOH . N 5 HOH B 37 541 662 HOH HOH . N 5 HOH B 38 542 663 HOH HOH . N 5 HOH B 39 543 665 HOH HOH . N 5 HOH B 40 544 667 HOH HOH . N 5 HOH B 41 545 668 HOH HOH . N 5 HOH B 42 546 672 HOH HOH . N 5 HOH B 43 547 674 HOH HOH . N 5 HOH B 44 548 675 HOH HOH . N 5 HOH B 45 549 676 HOH HOH . N 5 HOH B 46 550 677 HOH HOH . N 5 HOH B 47 551 679 HOH HOH . N 5 HOH B 48 552 681 HOH HOH . N 5 HOH B 49 553 682 HOH HOH . N 5 HOH B 50 554 683 HOH HOH . N 5 HOH B 51 555 684 HOH HOH . N 5 HOH B 52 556 685 HOH HOH . N 5 HOH B 53 557 686 HOH HOH . N 5 HOH B 54 558 687 HOH HOH . N 5 HOH B 55 559 691 HOH HOH . N 5 HOH B 56 560 692 HOH HOH . N 5 HOH B 57 561 693 HOH HOH . N 5 HOH B 58 562 694 HOH HOH . N 5 HOH B 59 563 695 HOH HOH . N 5 HOH B 60 564 697 HOH HOH . N 5 HOH B 61 565 699 HOH HOH . N 5 HOH B 62 566 700 HOH HOH . N 5 HOH B 63 567 701 HOH HOH . N 5 HOH B 64 568 702 HOH HOH . N 5 HOH B 65 569 703 HOH HOH . N 5 HOH B 66 570 704 HOH HOH . N 5 HOH B 67 571 708 HOH HOH . N 5 HOH B 68 572 709 HOH HOH . N 5 HOH B 69 573 710 HOH HOH . N 5 HOH B 70 574 712 HOH HOH . N 5 HOH B 71 575 713 HOH HOH . N 5 HOH B 72 576 717 HOH HOH . N 5 HOH B 73 577 719 HOH HOH . N 5 HOH B 74 578 721 HOH HOH . N 5 HOH B 75 579 722 HOH HOH . N 5 HOH B 76 580 727 HOH HOH . N 5 HOH B 77 581 729 HOH HOH . N 5 HOH B 78 582 730 HOH HOH . N 5 HOH B 79 583 731 HOH HOH . N 5 HOH B 80 584 732 HOH HOH . N 5 HOH B 81 585 734 HOH HOH . N 5 HOH B 82 586 735 HOH HOH . N 5 HOH B 83 587 736 HOH HOH . N 5 HOH B 84 588 737 HOH HOH . N 5 HOH B 85 589 738 HOH HOH . N 5 HOH B 86 590 739 HOH HOH . N 5 HOH B 87 591 743 HOH HOH . N 5 HOH B 88 592 745 HOH HOH . N 5 HOH B 89 593 747 HOH HOH . N 5 HOH B 90 594 748 HOH HOH . N 5 HOH B 91 595 749 HOH HOH . N 5 HOH B 92 596 753 HOH HOH . N 5 HOH B 93 597 754 HOH HOH . N 5 HOH B 94 598 755 HOH HOH . N 5 HOH B 95 599 757 HOH HOH . N 5 HOH B 96 600 758 HOH HOH . N 5 HOH B 97 601 760 HOH HOH . N 5 HOH B 98 602 761 HOH HOH . N 5 HOH B 99 603 762 HOH HOH . N 5 HOH B 100 604 766 HOH HOH . N 5 HOH B 101 605 768 HOH HOH . N 5 HOH B 102 606 769 HOH HOH . N 5 HOH B 103 607 776 HOH HOH . N 5 HOH B 104 608 777 HOH HOH . N 5 HOH B 105 609 778 HOH HOH . N 5 HOH B 106 610 779 HOH HOH . N 5 HOH B 107 611 780 HOH HOH . N 5 HOH B 108 612 781 HOH HOH . N 5 HOH B 109 613 784 HOH HOH . N 5 HOH B 110 614 785 HOH HOH . N 5 HOH B 111 615 786 HOH HOH . N 5 HOH B 112 616 787 HOH HOH . N 5 HOH B 113 617 788 HOH HOH . N 5 HOH B 114 618 789 HOH HOH . N 5 HOH B 115 619 790 HOH HOH . N 5 HOH B 116 620 792 HOH HOH . N 5 HOH B 117 621 793 HOH HOH . N 5 HOH B 118 622 794 HOH HOH . N 5 HOH B 119 623 798 HOH HOH . N 5 HOH B 120 624 803 HOH HOH . N 5 HOH B 121 625 806 HOH HOH . N 5 HOH B 122 626 808 HOH HOH . N 5 HOH B 123 627 810 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 36.78 _atom_site.Cartn_y 12.337 _atom_site.Cartn_z 109.41 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 24.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #