data_2YZ4 # _model_server_result.job_id hEADo5BRMhOW0_Yi4PL4Tg _model_server_result.datetime_utc '2024-12-27 16:08:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 2YZ4 # _exptl.entry_id 2YZ4 _exptl.method 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YZ4 _cell.length_a 89.377 _cell.length_b 87.314 _cell.length_c 63.051 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 89.377 87.314 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 89.377 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 87.314 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 B MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 B MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 B MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc9 B MN MN . A MN 500 1_555 D O DOD . A DOD 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc10 C CA CA . A CA 501 1_555 D O DOD . A DOD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc11 C CA CA . A CA 501 1_555 D O DOD . A DOD 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2YZ4 _atom_sites.fract_transf_matrix[1][1] 0.011189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 500 500 MN MN . C 3 CA A 1 501 501 CA KA . D 4 DOD A 1 502 240 DOD DOD . D 4 DOD A 2 503 241 DOD DOD . D 4 DOD A 3 504 242 DOD DOD . D 4 DOD A 4 505 243 DOD DOD . D 4 DOD A 5 506 244 DOD DOD . D 4 DOD A 6 507 245 DOD DOD . D 4 DOD A 7 508 246 DOD DOD . D 4 DOD A 8 509 247 DOD DOD . D 4 DOD A 9 510 248 DOD DOD . D 4 DOD A 10 511 249 DOD DOD . D 4 DOD A 11 512 250 DOD DOD . D 4 DOD A 12 513 251 DOD DOD . D 4 DOD A 13 514 252 DOD DOD . D 4 DOD A 14 515 253 DOD DOD . D 4 DOD A 15 516 254 DOD DOD . D 4 DOD A 16 517 255 DOD DOD . D 4 DOD A 17 518 256 DOD DOD . D 4 DOD A 18 519 257 DOD DOD . D 4 DOD A 19 520 258 DOD DOD . D 4 DOD A 20 521 259 DOD DOD . D 4 DOD A 21 522 260 DOD DOD . D 4 DOD A 22 523 261 DOD DOD . D 4 DOD A 23 524 262 DOD DOD . D 4 DOD A 24 525 263 DOD DOD . D 4 DOD A 25 526 264 DOD DOD . D 4 DOD A 26 527 265 DOD DOD . D 4 DOD A 27 528 266 DOD DOD . D 4 DOD A 28 529 267 DOD DOD . D 4 DOD A 29 530 268 DOD DOD . D 4 DOD A 30 531 269 DOD DOD . D 4 DOD A 31 532 270 DOD DOD . D 4 DOD A 32 533 271 DOD DOD . D 4 DOD A 33 534 272 DOD DOD . D 4 DOD A 34 535 273 DOD DOD . D 4 DOD A 35 536 274 DOD DOD . D 4 DOD A 36 537 275 DOD DOD . D 4 DOD A 37 538 276 DOD DOD . D 4 DOD A 38 539 277 DOD DOD . D 4 DOD A 39 540 278 DOD DOD . D 4 DOD A 40 541 279 DOD DOD . D 4 DOD A 41 542 280 DOD DOD . D 4 DOD A 42 543 281 DOD DOD . D 4 DOD A 43 544 282 DOD DOD . D 4 DOD A 44 545 283 DOD DOD . D 4 DOD A 45 546 284 DOD DOD . D 4 DOD A 46 547 285 DOD DOD . D 4 DOD A 47 548 286 DOD DOD . D 4 DOD A 48 549 287 DOD DOD . D 4 DOD A 49 550 288 DOD DOD . D 4 DOD A 50 551 289 DOD DOD . D 4 DOD A 51 552 290 DOD DOD . D 4 DOD A 52 553 291 DOD DOD . D 4 DOD A 53 554 292 DOD DOD . D 4 DOD A 54 555 293 DOD DOD . D 4 DOD A 55 556 294 DOD DOD . D 4 DOD A 56 557 295 DOD DOD . D 4 DOD A 57 558 296 DOD DOD . D 4 DOD A 58 559 297 DOD DOD . D 4 DOD A 59 560 298 DOD DOD . D 4 DOD A 60 561 299 DOD DOD . D 4 DOD A 61 562 300 DOD DOD . D 4 DOD A 62 563 301 DOD DOD . D 4 DOD A 63 564 302 DOD DOD . D 4 DOD A 64 565 303 DOD DOD . D 4 DOD A 65 566 304 DOD DOD . D 4 DOD A 66 567 305 DOD DOD . D 4 DOD A 67 568 306 DOD DOD . D 4 DOD A 68 569 307 DOD DOD . D 4 DOD A 69 570 308 DOD DOD . D 4 DOD A 70 571 309 DOD DOD . D 4 DOD A 71 572 310 DOD DOD . D 4 DOD A 72 573 311 DOD DOD . D 4 DOD A 73 574 312 DOD DOD . D 4 DOD A 74 575 313 DOD DOD . D 4 DOD A 75 576 314 DOD DOD . D 4 DOD A 76 577 315 DOD DOD . D 4 DOD A 77 578 316 DOD DOD . D 4 DOD A 78 579 317 DOD DOD . D 4 DOD A 79 580 318 DOD DOD . D 4 DOD A 80 581 319 DOD DOD . D 4 DOD A 81 582 320 DOD DOD . D 4 DOD A 82 583 321 DOD DOD . D 4 DOD A 83 584 322 DOD DOD . D 4 DOD A 84 585 323 DOD DOD . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 61.952 _atom_site.Cartn_y 18.518 _atom_site.Cartn_z 15.196 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #