data_2YZS # _model_server_result.job_id fyw2pBryaP4HQLQXm0EXsg _model_server_result.datetime_utc '2025-02-17 16:15:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yzs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 2YZS # _exptl.entry_id 2YZS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.34 _cell.angle_gamma 90 _cell.entry_id 2YZS _cell.length_a 122.235 _cell.length_b 96.979 _cell.length_c 93.495 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YZS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 65.526206 0 74.333221 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 138 A LEU 139 1_555 A N MSE 139 A MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 139 A MSE 140 1_555 A N SER 140 A SER 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ASN 250 A ASN 251 1_555 A N MSE 251 A MSE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 251 A MSE 252 1_555 A N THR 252 A THR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C LEU 138 B LEU 139 1_555 B N MSE 139 B MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 B C MSE 139 B MSE 140 1_555 B N SER 140 B SER 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 B C ASN 250 B ASN 251 1_555 B N MSE 251 B MSE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B C MSE 251 B MSE 252 1_555 B N THR 252 B THR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 2YZS _atom_sites.fract_transf_matrix[1][1] 0.008181 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006246 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 B 1 501 501 SO4 SO4 . D 3 HOH A 1 317 2 HOH HOH . D 3 HOH A 2 318 3 HOH HOH . D 3 HOH A 3 319 4 HOH HOH . D 3 HOH A 4 320 6 HOH HOH . D 3 HOH A 5 321 7 HOH HOH . D 3 HOH A 6 322 8 HOH HOH . D 3 HOH A 7 323 9 HOH HOH . D 3 HOH A 8 324 10 HOH HOH . D 3 HOH A 9 325 11 HOH HOH . D 3 HOH A 10 326 12 HOH HOH . D 3 HOH A 11 327 13 HOH HOH . D 3 HOH A 12 328 15 HOH HOH . D 3 HOH A 13 329 16 HOH HOH . D 3 HOH A 14 330 17 HOH HOH . D 3 HOH A 15 331 18 HOH HOH . D 3 HOH A 16 332 22 HOH HOH . D 3 HOH A 17 333 23 HOH HOH . D 3 HOH A 18 334 24 HOH HOH . D 3 HOH A 19 335 26 HOH HOH . D 3 HOH A 20 336 27 HOH HOH . D 3 HOH A 21 337 31 HOH HOH . D 3 HOH A 22 338 33 HOH HOH . D 3 HOH A 23 339 34 HOH HOH . D 3 HOH A 24 340 36 HOH HOH . D 3 HOH A 25 341 37 HOH HOH . D 3 HOH A 26 342 38 HOH HOH . D 3 HOH A 27 343 39 HOH HOH . D 3 HOH A 28 344 42 HOH HOH . D 3 HOH A 29 345 43 HOH HOH . D 3 HOH A 30 346 44 HOH HOH . D 3 HOH A 31 347 45 HOH HOH . D 3 HOH A 32 348 47 HOH HOH . D 3 HOH A 33 349 49 HOH HOH . D 3 HOH A 34 350 50 HOH HOH . D 3 HOH A 35 351 55 HOH HOH . D 3 HOH A 36 352 57 HOH HOH . D 3 HOH A 37 353 58 HOH HOH . D 3 HOH A 38 354 63 HOH HOH . D 3 HOH A 39 355 65 HOH HOH . D 3 HOH A 40 356 66 HOH HOH . D 3 HOH A 41 357 67 HOH HOH . D 3 HOH A 42 358 68 HOH HOH . D 3 HOH A 43 359 71 HOH HOH . D 3 HOH A 44 360 76 HOH HOH . D 3 HOH A 45 361 78 HOH HOH . D 3 HOH A 46 362 80 HOH HOH . D 3 HOH A 47 363 81 HOH HOH . D 3 HOH A 48 364 85 HOH HOH . D 3 HOH A 49 365 86 HOH HOH . D 3 HOH A 50 366 87 HOH HOH . D 3 HOH A 51 367 90 HOH HOH . D 3 HOH A 52 368 91 HOH HOH . D 3 HOH A 53 369 93 HOH HOH . D 3 HOH A 54 370 95 HOH HOH . D 3 HOH A 55 371 98 HOH HOH . D 3 HOH A 56 372 101 HOH HOH . D 3 HOH A 57 373 102 HOH HOH . D 3 HOH A 58 374 104 HOH HOH . D 3 HOH A 59 375 105 HOH HOH . D 3 HOH A 60 376 106 HOH HOH . D 3 HOH A 61 377 107 HOH HOH . D 3 HOH A 62 378 109 HOH HOH . D 3 HOH A 63 379 110 HOH HOH . D 3 HOH A 64 380 112 HOH HOH . D 3 HOH A 65 381 113 HOH HOH . D 3 HOH A 66 382 114 HOH HOH . D 3 HOH A 67 383 117 HOH HOH . D 3 HOH A 68 384 119 HOH HOH . D 3 HOH A 69 385 124 HOH HOH . D 3 HOH A 70 386 127 HOH HOH . D 3 HOH A 71 387 128 HOH HOH . D 3 HOH A 72 388 130 HOH HOH . D 3 HOH A 73 389 132 HOH HOH . D 3 HOH A 74 390 133 HOH HOH . D 3 HOH A 75 391 136 HOH HOH . D 3 HOH A 76 392 138 HOH HOH . D 3 HOH A 77 393 139 HOH HOH . D 3 HOH A 78 394 140 HOH HOH . D 3 HOH A 79 395 142 HOH HOH . D 3 HOH A 80 396 144 HOH HOH . D 3 HOH A 81 397 146 HOH HOH . D 3 HOH A 82 398 148 HOH HOH . D 3 HOH A 83 399 149 HOH HOH . D 3 HOH A 84 400 150 HOH HOH . D 3 HOH A 85 401 151 HOH HOH . D 3 HOH A 86 402 152 HOH HOH . D 3 HOH A 87 403 153 HOH HOH . D 3 HOH A 88 404 155 HOH HOH . D 3 HOH A 89 405 156 HOH HOH . D 3 HOH A 90 406 157 HOH HOH . D 3 HOH A 91 407 158 HOH HOH . D 3 HOH A 92 408 159 HOH HOH . D 3 HOH A 93 409 165 HOH HOH . D 3 HOH A 94 410 166 HOH HOH . D 3 HOH A 95 411 167 HOH HOH . D 3 HOH A 96 412 171 HOH HOH . D 3 HOH A 97 413 172 HOH HOH . D 3 HOH A 98 414 173 HOH HOH . D 3 HOH A 99 415 174 HOH HOH . D 3 HOH A 100 416 175 HOH HOH . D 3 HOH A 101 417 176 HOH HOH . D 3 HOH A 102 418 178 HOH HOH . D 3 HOH A 103 419 179 HOH HOH . D 3 HOH A 104 420 180 HOH HOH . D 3 HOH A 105 421 181 HOH HOH . D 3 HOH A 106 422 182 HOH HOH . D 3 HOH A 107 423 183 HOH HOH . D 3 HOH A 108 424 184 HOH HOH . D 3 HOH A 109 425 185 HOH HOH . D 3 HOH A 110 426 186 HOH HOH . D 3 HOH A 111 427 187 HOH HOH . D 3 HOH A 112 428 188 HOH HOH . D 3 HOH A 113 429 189 HOH HOH . D 3 HOH A 114 430 190 HOH HOH . D 3 HOH A 115 431 191 HOH HOH . D 3 HOH A 116 432 194 HOH HOH . D 3 HOH A 117 433 195 HOH HOH . D 3 HOH A 118 434 196 HOH HOH . D 3 HOH A 119 435 197 HOH HOH . D 3 HOH A 120 436 198 HOH HOH . D 3 HOH A 121 437 199 HOH HOH . D 3 HOH A 122 438 203 HOH HOH . D 3 HOH A 123 439 204 HOH HOH . D 3 HOH A 124 440 205 HOH HOH . D 3 HOH A 125 441 206 HOH HOH . D 3 HOH A 126 442 207 HOH HOH . D 3 HOH A 127 443 209 HOH HOH . D 3 HOH A 128 444 223 HOH HOH . D 3 HOH A 129 445 224 HOH HOH . D 3 HOH A 130 446 226 HOH HOH . D 3 HOH A 131 447 227 HOH HOH . D 3 HOH A 132 448 228 HOH HOH . D 3 HOH A 133 449 229 HOH HOH . D 3 HOH A 134 450 234 HOH HOH . D 3 HOH A 135 451 235 HOH HOH . D 3 HOH A 136 452 239 HOH HOH . D 3 HOH A 137 453 240 HOH HOH . D 3 HOH A 138 454 241 HOH HOH . D 3 HOH A 139 455 244 HOH HOH . D 3 HOH A 140 456 248 HOH HOH . D 3 HOH A 141 457 250 HOH HOH . D 3 HOH A 142 458 252 HOH HOH . D 3 HOH A 143 459 254 HOH HOH . D 3 HOH A 144 460 256 HOH HOH . D 3 HOH A 145 461 257 HOH HOH . D 3 HOH A 146 462 260 HOH HOH . D 3 HOH A 147 463 263 HOH HOH . D 3 HOH A 148 464 264 HOH HOH . D 3 HOH A 149 465 265 HOH HOH . E 3 HOH B 1 502 1 HOH HOH . E 3 HOH B 2 503 5 HOH HOH . E 3 HOH B 3 504 14 HOH HOH . E 3 HOH B 4 505 19 HOH HOH . E 3 HOH B 5 506 20 HOH HOH . E 3 HOH B 6 507 21 HOH HOH . E 3 HOH B 7 508 25 HOH HOH . E 3 HOH B 8 509 28 HOH HOH . E 3 HOH B 9 510 29 HOH HOH . E 3 HOH B 10 511 30 HOH HOH . E 3 HOH B 11 512 32 HOH HOH . E 3 HOH B 12 513 35 HOH HOH . E 3 HOH B 13 514 40 HOH HOH . E 3 HOH B 14 515 41 HOH HOH . E 3 HOH B 15 516 46 HOH HOH . E 3 HOH B 16 517 48 HOH HOH . E 3 HOH B 17 518 51 HOH HOH . E 3 HOH B 18 519 52 HOH HOH . E 3 HOH B 19 520 53 HOH HOH . E 3 HOH B 20 521 54 HOH HOH . E 3 HOH B 21 522 56 HOH HOH . E 3 HOH B 22 523 59 HOH HOH . E 3 HOH B 23 524 60 HOH HOH . E 3 HOH B 24 525 61 HOH HOH . E 3 HOH B 25 526 62 HOH HOH . E 3 HOH B 26 527 64 HOH HOH . E 3 HOH B 27 528 69 HOH HOH . E 3 HOH B 28 529 70 HOH HOH . E 3 HOH B 29 530 72 HOH HOH . E 3 HOH B 30 531 73 HOH HOH . E 3 HOH B 31 532 74 HOH HOH . E 3 HOH B 32 533 75 HOH HOH . E 3 HOH B 33 534 77 HOH HOH . E 3 HOH B 34 535 79 HOH HOH . E 3 HOH B 35 536 82 HOH HOH . E 3 HOH B 36 537 83 HOH HOH . E 3 HOH B 37 538 84 HOH HOH . E 3 HOH B 38 539 88 HOH HOH . E 3 HOH B 39 540 89 HOH HOH . E 3 HOH B 40 541 92 HOH HOH . E 3 HOH B 41 542 94 HOH HOH . E 3 HOH B 42 543 96 HOH HOH . E 3 HOH B 43 544 97 HOH HOH . E 3 HOH B 44 545 99 HOH HOH . E 3 HOH B 45 546 100 HOH HOH . E 3 HOH B 46 547 103 HOH HOH . E 3 HOH B 47 548 108 HOH HOH . E 3 HOH B 48 549 111 HOH HOH . E 3 HOH B 49 550 115 HOH HOH . E 3 HOH B 50 551 116 HOH HOH . E 3 HOH B 51 552 118 HOH HOH . E 3 HOH B 52 553 120 HOH HOH . E 3 HOH B 53 554 121 HOH HOH . E 3 HOH B 54 555 122 HOH HOH . E 3 HOH B 55 556 123 HOH HOH . E 3 HOH B 56 557 125 HOH HOH . E 3 HOH B 57 558 126 HOH HOH . E 3 HOH B 58 559 129 HOH HOH . E 3 HOH B 59 560 131 HOH HOH . E 3 HOH B 60 561 134 HOH HOH . E 3 HOH B 61 562 135 HOH HOH . E 3 HOH B 62 563 137 HOH HOH . E 3 HOH B 63 564 141 HOH HOH . E 3 HOH B 64 565 143 HOH HOH . E 3 HOH B 65 566 145 HOH HOH . E 3 HOH B 66 567 147 HOH HOH . E 3 HOH B 67 568 154 HOH HOH . E 3 HOH B 68 569 160 HOH HOH . E 3 HOH B 69 570 161 HOH HOH . E 3 HOH B 70 571 162 HOH HOH . E 3 HOH B 71 572 163 HOH HOH . E 3 HOH B 72 573 164 HOH HOH . E 3 HOH B 73 574 168 HOH HOH . E 3 HOH B 74 575 169 HOH HOH . E 3 HOH B 75 576 170 HOH HOH . E 3 HOH B 76 577 177 HOH HOH . E 3 HOH B 77 578 192 HOH HOH . E 3 HOH B 78 579 193 HOH HOH . E 3 HOH B 79 580 200 HOH HOH . E 3 HOH B 80 581 201 HOH HOH . E 3 HOH B 81 582 202 HOH HOH . E 3 HOH B 82 583 208 HOH HOH . E 3 HOH B 83 584 210 HOH HOH . E 3 HOH B 84 585 211 HOH HOH . E 3 HOH B 85 586 212 HOH HOH . E 3 HOH B 86 587 213 HOH HOH . E 3 HOH B 87 588 214 HOH HOH . E 3 HOH B 88 589 215 HOH HOH . E 3 HOH B 89 590 216 HOH HOH . E 3 HOH B 90 591 217 HOH HOH . E 3 HOH B 91 592 218 HOH HOH . E 3 HOH B 92 593 219 HOH HOH . E 3 HOH B 93 594 220 HOH HOH . E 3 HOH B 94 595 221 HOH HOH . E 3 HOH B 95 596 222 HOH HOH . E 3 HOH B 96 597 225 HOH HOH . E 3 HOH B 97 598 230 HOH HOH . E 3 HOH B 98 599 231 HOH HOH . E 3 HOH B 99 600 232 HOH HOH . E 3 HOH B 100 601 233 HOH HOH . E 3 HOH B 101 602 236 HOH HOH . E 3 HOH B 102 603 237 HOH HOH . E 3 HOH B 103 604 238 HOH HOH . E 3 HOH B 104 605 242 HOH HOH . E 3 HOH B 105 606 243 HOH HOH . E 3 HOH B 106 607 245 HOH HOH . E 3 HOH B 107 608 246 HOH HOH . E 3 HOH B 108 609 247 HOH HOH . E 3 HOH B 109 610 249 HOH HOH . E 3 HOH B 110 611 251 HOH HOH . E 3 HOH B 111 612 253 HOH HOH . E 3 HOH B 112 613 255 HOH HOH . E 3 HOH B 113 614 258 HOH HOH . E 3 HOH B 114 615 259 HOH HOH . E 3 HOH B 115 616 261 HOH HOH . E 3 HOH B 116 617 262 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 2 27.106 35.416 27.923 1 43.92 ? S SO4 501 B 1 HETATM 2 O O1 SO4 . . . C 2 28.509 35.73 28.25 1 43.92 ? O1 SO4 501 B 1 HETATM 3 O O2 SO4 . . . C 2 26.202 36.252 28.729 1 44.32 ? O2 SO4 501 B 1 HETATM 4 O O3 SO4 . . . C 2 26.878 35.688 26.491 1 47.19 ? O3 SO4 501 B 1 HETATM 5 O O4 SO4 . . . C 2 26.833 33.996 28.21 1 43.98 ? O4 SO4 501 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #