data_2Z09 # _model_server_result.job_id RaifulOnYutYBpep3Saz4g _model_server_result.datetime_utc '2024-11-16 20:46:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3002}' # _entry.id 2Z09 # _exptl.entry_id 2Z09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z09 _cell.length_a 33.22 _cell.length_b 75.9 _cell.length_c 88.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 33.22 75.9 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 33.22 0 88.66 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 75.9 88.66 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O1A ACP . A ACP 2001 1_555 B MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc2 D O2B ACP . A ACP 2001 1_555 B MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc3 D O1G ACP . A ACP 2001 1_555 B MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 B MG MG . A MG 3001 1_555 E O HOH . A HOH 3079 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 B MG MG . A MG 3001 1_555 E O HOH . A HOH 3080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 B MG MG . A MG 3001 1_555 E O HOH . A HOH 3081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc7 C MG MG . A MG 3002 1_555 E O HOH . A HOH 3084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2Z09 _atom_sites.fract_transf_matrix[1][1] 0.030102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 3001 3001 MG MG2 . C 2 MG A 1 3002 3002 MG MG2 . D 3 ACP A 1 2001 2001 ACP ACP . E 4 HOH A 1 3003 1 HOH HOH . E 4 HOH A 2 3004 2 HOH HOH . E 4 HOH A 3 3005 3 HOH HOH . E 4 HOH A 4 3006 4 HOH HOH . E 4 HOH A 5 3007 5 HOH HOH . E 4 HOH A 6 3008 6 HOH HOH . E 4 HOH A 7 3009 7 HOH HOH . E 4 HOH A 8 3010 8 HOH HOH . E 4 HOH A 9 3011 9 HOH HOH . E 4 HOH A 10 3012 10 HOH HOH . E 4 HOH A 11 3013 11 HOH HOH . E 4 HOH A 12 3014 12 HOH HOH . E 4 HOH A 13 3015 13 HOH HOH . E 4 HOH A 14 3016 14 HOH HOH . E 4 HOH A 15 3017 15 HOH HOH . E 4 HOH A 16 3018 16 HOH HOH . E 4 HOH A 17 3019 17 HOH HOH . E 4 HOH A 18 3020 18 HOH HOH . E 4 HOH A 19 3021 19 HOH HOH . E 4 HOH A 20 3022 20 HOH HOH . E 4 HOH A 21 3023 21 HOH HOH . E 4 HOH A 22 3024 22 HOH HOH . E 4 HOH A 23 3025 23 HOH HOH . E 4 HOH A 24 3026 24 HOH HOH . E 4 HOH A 25 3027 25 HOH HOH . E 4 HOH A 26 3028 26 HOH HOH . E 4 HOH A 27 3029 27 HOH HOH . E 4 HOH A 28 3030 28 HOH HOH . E 4 HOH A 29 3031 29 HOH HOH . E 4 HOH A 30 3032 30 HOH HOH . E 4 HOH A 31 3033 31 HOH HOH . E 4 HOH A 32 3034 32 HOH HOH . E 4 HOH A 33 3035 33 HOH HOH . E 4 HOH A 34 3036 34 HOH HOH . E 4 HOH A 35 3037 35 HOH HOH . E 4 HOH A 36 3038 36 HOH HOH . E 4 HOH A 37 3039 37 HOH HOH . E 4 HOH A 38 3040 38 HOH HOH . E 4 HOH A 39 3041 39 HOH HOH . E 4 HOH A 40 3042 40 HOH HOH . E 4 HOH A 41 3043 41 HOH HOH . E 4 HOH A 42 3044 42 HOH HOH . E 4 HOH A 43 3045 43 HOH HOH . E 4 HOH A 44 3046 44 HOH HOH . E 4 HOH A 45 3047 45 HOH HOH . E 4 HOH A 46 3048 46 HOH HOH . E 4 HOH A 47 3049 47 HOH HOH . E 4 HOH A 48 3050 48 HOH HOH . E 4 HOH A 49 3051 49 HOH HOH . E 4 HOH A 50 3052 50 HOH HOH . E 4 HOH A 51 3053 51 HOH HOH . E 4 HOH A 52 3054 52 HOH HOH . E 4 HOH A 53 3055 53 HOH HOH . E 4 HOH A 54 3056 54 HOH HOH . E 4 HOH A 55 3057 55 HOH HOH . E 4 HOH A 56 3058 56 HOH HOH . E 4 HOH A 57 3059 57 HOH HOH . E 4 HOH A 58 3060 58 HOH HOH . E 4 HOH A 59 3061 59 HOH HOH . E 4 HOH A 60 3062 60 HOH HOH . E 4 HOH A 61 3063 61 HOH HOH . E 4 HOH A 62 3064 62 HOH HOH . E 4 HOH A 63 3065 63 HOH HOH . E 4 HOH A 64 3066 64 HOH HOH . E 4 HOH A 65 3067 65 HOH HOH . E 4 HOH A 66 3068 66 HOH HOH . E 4 HOH A 67 3069 67 HOH HOH . E 4 HOH A 68 3070 68 HOH HOH . E 4 HOH A 69 3071 69 HOH HOH . E 4 HOH A 70 3072 70 HOH HOH . E 4 HOH A 71 3073 71 HOH HOH . E 4 HOH A 72 3074 72 HOH HOH . E 4 HOH A 73 3075 73 HOH HOH . E 4 HOH A 74 3076 74 HOH HOH . E 4 HOH A 75 3077 75 HOH HOH . E 4 HOH A 76 3078 76 HOH HOH . E 4 HOH A 77 3079 77 HOH HOH . E 4 HOH A 78 3080 78 HOH HOH . E 4 HOH A 79 3081 79 HOH HOH . E 4 HOH A 80 3082 80 HOH HOH . E 4 HOH A 81 3083 81 HOH HOH . E 4 HOH A 82 3084 82 HOH HOH . E 4 HOH A 83 3085 83 HOH HOH . E 4 HOH A 84 3086 84 HOH HOH . E 4 HOH A 85 3087 85 HOH HOH . E 4 HOH A 86 3088 86 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.614 _atom_site.Cartn_y 37.902 _atom_site.Cartn_z 30.115 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 27.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 3002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #