data_2Z12 # _model_server_result.job_id pevhjGdhRnhyA7fQWp-4Ew _model_server_result.datetime_utc '2024-11-18 21:40:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":130}' # _entry.id 2Z12 # _exptl.entry_id 2Z12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.4 _cell.angle_gamma 90 _cell.entry_id 2Z12 _cell.length_a 25.947 _cell.length_b 58.021 _cell.length_c 30.58 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2Z12 _atom_sites.fract_transf_matrix[1][1] 0.03854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.014333 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.034889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 130 130 NA NA . C 3 CL A 1 131 131 CL CL . D 3 CL A 1 132 132 CL CL . E 3 CL A 1 133 133 CL CL . F 3 CL A 1 134 134 CL CL . G 4 HOH A 1 135 135 HOH HOH . G 4 HOH A 2 136 136 HOH HOH . G 4 HOH A 3 137 137 HOH HOH . G 4 HOH A 4 138 138 HOH HOH . G 4 HOH A 5 139 139 HOH HOH . G 4 HOH A 6 140 140 HOH HOH . G 4 HOH A 7 141 141 HOH HOH . G 4 HOH A 8 142 142 HOH HOH . G 4 HOH A 9 143 143 HOH HOH . G 4 HOH A 10 144 144 HOH HOH . G 4 HOH A 11 145 145 HOH HOH . G 4 HOH A 12 146 146 HOH HOH . G 4 HOH A 13 147 147 HOH HOH . G 4 HOH A 14 148 148 HOH HOH . G 4 HOH A 15 149 149 HOH HOH . G 4 HOH A 16 150 150 HOH HOH . G 4 HOH A 17 151 151 HOH HOH . G 4 HOH A 18 152 152 HOH HOH . G 4 HOH A 19 153 153 HOH HOH . G 4 HOH A 20 154 154 HOH HOH . G 4 HOH A 21 155 155 HOH HOH . G 4 HOH A 22 156 156 HOH HOH . G 4 HOH A 23 157 157 HOH HOH . G 4 HOH A 24 158 158 HOH HOH . G 4 HOH A 25 159 159 HOH HOH . G 4 HOH A 26 160 160 HOH HOH . G 4 HOH A 27 161 161 HOH HOH . G 4 HOH A 28 162 162 HOH HOH . G 4 HOH A 29 163 163 HOH HOH . G 4 HOH A 30 164 164 HOH HOH . G 4 HOH A 31 165 165 HOH HOH . G 4 HOH A 32 166 166 HOH HOH . G 4 HOH A 33 167 167 HOH HOH . G 4 HOH A 34 168 168 HOH HOH . G 4 HOH A 35 169 169 HOH HOH . G 4 HOH A 36 170 170 HOH HOH . G 4 HOH A 37 171 171 HOH HOH . G 4 HOH A 38 172 172 HOH HOH . G 4 HOH A 39 173 173 HOH HOH . G 4 HOH A 40 174 174 HOH HOH . G 4 HOH A 41 175 175 HOH HOH . G 4 HOH A 42 176 176 HOH HOH . G 4 HOH A 43 177 177 HOH HOH . G 4 HOH A 44 178 178 HOH HOH . G 4 HOH A 45 179 179 HOH HOH . G 4 HOH A 46 180 180 HOH HOH . G 4 HOH A 47 181 181 HOH HOH . G 4 HOH A 48 182 182 HOH HOH . G 4 HOH A 49 183 183 HOH HOH . G 4 HOH A 50 184 184 HOH HOH . G 4 HOH A 51 185 185 HOH HOH . G 4 HOH A 52 186 186 HOH HOH . G 4 HOH A 53 187 187 HOH HOH . G 4 HOH A 54 188 188 HOH HOH . G 4 HOH A 55 189 189 HOH HOH . G 4 HOH A 56 190 190 HOH HOH . G 4 HOH A 57 191 191 HOH HOH . G 4 HOH A 58 192 192 HOH HOH . G 4 HOH A 59 193 193 HOH HOH . G 4 HOH A 60 194 194 HOH HOH . G 4 HOH A 61 195 195 HOH HOH . G 4 HOH A 62 196 196 HOH HOH . G 4 HOH A 63 197 197 HOH HOH . G 4 HOH A 64 198 198 HOH HOH . G 4 HOH A 65 199 199 HOH HOH . G 4 HOH A 66 200 200 HOH HOH . G 4 HOH A 67 201 201 HOH HOH . G 4 HOH A 68 202 202 HOH HOH . G 4 HOH A 69 203 203 HOH HOH . G 4 HOH A 70 204 204 HOH HOH . G 4 HOH A 71 205 205 HOH HOH . G 4 HOH A 72 206 206 HOH HOH . G 4 HOH A 73 207 207 HOH HOH . G 4 HOH A 74 208 208 HOH HOH . G 4 HOH A 75 209 209 HOH HOH . G 4 HOH A 76 210 210 HOH HOH . G 4 HOH A 77 211 211 HOH HOH . G 4 HOH A 78 212 212 HOH HOH . G 4 HOH A 79 213 213 HOH HOH . G 4 HOH A 80 214 214 HOH HOH . G 4 HOH A 81 215 215 HOH HOH . G 4 HOH A 82 216 216 HOH HOH . G 4 HOH A 83 217 217 HOH HOH . G 4 HOH A 84 218 218 HOH HOH . G 4 HOH A 85 219 219 HOH HOH . G 4 HOH A 86 220 220 HOH HOH . G 4 HOH A 87 221 221 HOH HOH . G 4 HOH A 88 222 222 HOH HOH . G 4 HOH A 89 223 223 HOH HOH . G 4 HOH A 90 224 224 HOH HOH . G 4 HOH A 91 225 225 HOH HOH . G 4 HOH A 92 226 226 HOH HOH . G 4 HOH A 93 227 227 HOH HOH . G 4 HOH A 94 228 228 HOH HOH . G 4 HOH A 95 229 229 HOH HOH . G 4 HOH A 96 230 230 HOH HOH . G 4 HOH A 97 231 231 HOH HOH . G 4 HOH A 98 232 232 HOH HOH . G 4 HOH A 99 233 233 HOH HOH . G 4 HOH A 100 234 234 HOH HOH . G 4 HOH A 101 235 235 HOH HOH . G 4 HOH A 102 236 236 HOH HOH . G 4 HOH A 103 237 237 HOH HOH . G 4 HOH A 104 238 238 HOH HOH . G 4 HOH A 105 239 239 HOH HOH . G 4 HOH A 106 240 240 HOH HOH . G 4 HOH A 107 241 241 HOH HOH . G 4 HOH A 108 242 242 HOH HOH . G 4 HOH A 109 243 243 HOH HOH . G 4 HOH A 110 244 244 HOH HOH . G 4 HOH A 111 245 245 HOH HOH . G 4 HOH A 112 246 246 HOH HOH . G 4 HOH A 113 247 247 HOH HOH . G 4 HOH A 114 248 248 HOH HOH . G 4 HOH A 115 249 249 HOH HOH . G 4 HOH A 116 250 250 HOH HOH . G 4 HOH A 117 251 251 HOH HOH . G 4 HOH A 118 252 252 HOH HOH . G 4 HOH A 119 253 253 HOH HOH . G 4 HOH A 120 254 254 HOH HOH . G 4 HOH A 121 255 255 HOH HOH . G 4 HOH A 122 256 256 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.294 _atom_site.Cartn_y 29.834 _atom_site.Cartn_z 21.589 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 130 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 457 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #