data_2Z1X
#
_model_server_result.job_id            W385wjVYRSW7qWZ8OLPj1Q 
_model_server_result.datetime_utc      '2024-11-29 17:14:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2z1x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":600}' 
#
_entry.id    2Z1X 
#
_exptl.entry_id    2Z1X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              179.179 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-DEAZA-7-AMINOMETHYL-GUANINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.88 
_cell.angle_gamma         90 
_cell.entry_id            2Z1X 
_cell.length_a            89.138 
_cell.length_b            64.139 
_cell.length_c            69.856 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Z1X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 318 A CYS 318 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc2 A SG CYS 320 A CYS 320 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc3 A SG CYS 323 A CYS 323 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc4 A ND1 HIS 349 A HIS 349 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
#
_chem_comp.formula           'C7 H9 N5 O' 
_chem_comp.formula_weight    179.179 
_chem_comp.id                PRF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-DEAZA-7-AMINOMETHYL-GUANINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PRF sing 273 n n 
N1 C6 PRF sing 274 n n 
N1 H91 PRF sing 275 n n 
C2 N3 PRF doub 276 n n 
C2 N2 PRF sing 277 n n 
N3 C4 PRF sing 278 n n 
C4 C5 PRF doub 279 n y 
C4 N9 PRF sing 280 n y 
C5 C6 PRF sing 281 n n 
C5 C7 PRF sing 282 n y 
C6 O6 PRF doub 283 n n 
C7 C10 PRF sing 284 n n 
C7 C8 PRF doub 285 n y 
C10 N11 PRF sing 286 n n 
C10 H101 PRF sing 287 n n 
C10 H102 PRF sing 288 n n 
N11 H111 PRF sing 289 n n 
N11 H112 PRF sing 290 n n 
C8 N9 PRF sing 291 n y 
C8 H81 PRF sing 292 n n 
N9 HN91 PRF sing 293 n n 
N2 HN21 PRF sing 294 n n 
N2 HN22 PRF sing 295 n n 
#
_atom_sites.entry_id                     2Z1X 
_atom_sites.fract_transf_matrix[1][1]    0.011219 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000564 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014333 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 500 500 ZN ZN . 
C 3 PRF A 1 600 600 PRF PRF . 
D 4 GOL A 1 701 701 GOL GOL . 
E 4 GOL A 1 702 702 GOL GOL . 
F 4 GOL A 1 703 703 GOL GOL . 
G 4 GOL A 1 705 705 GOL GOL . 
H 4 GOL A 1 710 710 GOL GOL . 
I 4 GOL A 1 712 712 GOL GOL . 
J 4 GOL A 1 714 714 GOL GOL . 
K 4 GOL A 1 716 716 GOL GOL . 
L 5 HOH A 1 717 1001 HOH HOH . 
L 5 HOH A 2 718 1002 HOH HOH . 
L 5 HOH A 3 719 1003 HOH HOH . 
L 5 HOH A 4 720 1004 HOH HOH . 
L 5 HOH A 5 721 1005 HOH HOH . 
L 5 HOH A 6 722 1006 HOH HOH . 
L 5 HOH A 7 723 1007 HOH HOH . 
L 5 HOH A 8 724 1008 HOH HOH . 
L 5 HOH A 9 725 1009 HOH HOH . 
L 5 HOH A 10 726 1010 HOH HOH . 
L 5 HOH A 11 727 1011 HOH HOH . 
L 5 HOH A 12 728 1012 HOH HOH . 
L 5 HOH A 13 729 1013 HOH HOH . 
L 5 HOH A 14 730 1014 HOH HOH . 
L 5 HOH A 15 731 1015 HOH HOH . 
L 5 HOH A 16 732 1016 HOH HOH . 
L 5 HOH A 17 733 1017 HOH HOH . 
L 5 HOH A 18 734 1018 HOH HOH . 
L 5 HOH A 19 735 1019 HOH HOH . 
L 5 HOH A 20 736 1020 HOH HOH . 
L 5 HOH A 21 737 1021 HOH HOH . 
L 5 HOH A 22 738 1022 HOH HOH . 
L 5 HOH A 23 739 1023 HOH HOH . 
L 5 HOH A 24 740 1024 HOH HOH . 
L 5 HOH A 25 741 1025 HOH HOH . 
L 5 HOH A 26 742 1026 HOH HOH . 
L 5 HOH A 27 743 1027 HOH HOH . 
L 5 HOH A 28 744 1028 HOH HOH . 
L 5 HOH A 29 745 1029 HOH HOH . 
L 5 HOH A 30 746 1030 HOH HOH . 
L 5 HOH A 31 747 1031 HOH HOH . 
L 5 HOH A 32 748 1032 HOH HOH . 
L 5 HOH A 33 749 1033 HOH HOH . 
L 5 HOH A 34 750 1034 HOH HOH . 
L 5 HOH A 35 751 1035 HOH HOH . 
L 5 HOH A 36 752 1036 HOH HOH . 
L 5 HOH A 37 753 1037 HOH HOH . 
L 5 HOH A 38 754 1038 HOH HOH . 
L 5 HOH A 39 755 1039 HOH HOH . 
L 5 HOH A 40 756 1040 HOH HOH . 
L 5 HOH A 41 757 1041 HOH HOH . 
L 5 HOH A 42 758 1042 HOH HOH . 
L 5 HOH A 43 759 1043 HOH HOH . 
L 5 HOH A 44 760 1044 HOH HOH . 
L 5 HOH A 45 761 1045 HOH HOH . 
L 5 HOH A 46 762 1046 HOH HOH . 
L 5 HOH A 47 763 1047 HOH HOH . 
L 5 HOH A 48 764 1048 HOH HOH . 
L 5 HOH A 49 765 1049 HOH HOH . 
L 5 HOH A 50 766 1050 HOH HOH . 
L 5 HOH A 51 767 1051 HOH HOH . 
L 5 HOH A 52 768 1052 HOH HOH . 
L 5 HOH A 53 769 1053 HOH HOH . 
L 5 HOH A 54 770 1054 HOH HOH . 
L 5 HOH A 55 771 1055 HOH HOH . 
L 5 HOH A 56 772 1056 HOH HOH . 
L 5 HOH A 57 773 1057 HOH HOH . 
L 5 HOH A 58 774 1058 HOH HOH . 
L 5 HOH A 59 775 1059 HOH HOH . 
L 5 HOH A 60 776 1060 HOH HOH . 
L 5 HOH A 61 777 1061 HOH HOH . 
L 5 HOH A 62 778 1062 HOH HOH . 
L 5 HOH A 63 779 1063 HOH HOH . 
L 5 HOH A 64 780 1064 HOH HOH . 
L 5 HOH A 65 781 1065 HOH HOH . 
L 5 HOH A 66 782 1066 HOH HOH . 
L 5 HOH A 67 783 1067 HOH HOH . 
L 5 HOH A 68 784 1068 HOH HOH . 
L 5 HOH A 69 785 1069 HOH HOH . 
L 5 HOH A 70 786 1070 HOH HOH . 
L 5 HOH A 71 787 1071 HOH HOH . 
L 5 HOH A 72 788 1072 HOH HOH . 
L 5 HOH A 73 789 1073 HOH HOH . 
L 5 HOH A 74 790 1074 HOH HOH . 
L 5 HOH A 75 791 1075 HOH HOH . 
L 5 HOH A 76 792 1076 HOH HOH . 
L 5 HOH A 77 793 1077 HOH HOH . 
L 5 HOH A 78 794 1078 HOH HOH . 
L 5 HOH A 79 795 1079 HOH HOH . 
L 5 HOH A 80 796 1080 HOH HOH . 
L 5 HOH A 81 797 1081 HOH HOH . 
L 5 HOH A 82 798 1082 HOH HOH . 
L 5 HOH A 83 799 1083 HOH HOH . 
L 5 HOH A 84 800 1084 HOH HOH . 
L 5 HOH A 85 801 1085 HOH HOH . 
L 5 HOH A 86 802 1086 HOH HOH . 
L 5 HOH A 87 803 1087 HOH HOH . 
L 5 HOH A 88 804 1088 HOH HOH . 
L 5 HOH A 89 805 1089 HOH HOH . 
L 5 HOH A 90 806 1090 HOH HOH . 
L 5 HOH A 91 807 1091 HOH HOH . 
L 5 HOH A 92 808 1092 HOH HOH . 
L 5 HOH A 93 809 1093 HOH HOH . 
L 5 HOH A 94 810 1094 HOH HOH . 
L 5 HOH A 95 811 1095 HOH HOH . 
L 5 HOH A 96 812 1096 HOH HOH . 
L 5 HOH A 97 813 1097 HOH HOH . 
L 5 HOH A 98 814 1098 HOH HOH . 
L 5 HOH A 99 815 1099 HOH HOH . 
L 5 HOH A 100 816 1100 HOH HOH . 
L 5 HOH A 101 817 1101 HOH HOH . 
L 5 HOH A 102 818 1102 HOH HOH . 
L 5 HOH A 103 819 1103 HOH HOH . 
L 5 HOH A 104 820 1104 HOH HOH . 
L 5 HOH A 105 821 1105 HOH HOH . 
L 5 HOH A 106 822 1106 HOH HOH . 
L 5 HOH A 107 823 1107 HOH HOH . 
L 5 HOH A 108 824 1108 HOH HOH . 
L 5 HOH A 109 825 1109 HOH HOH . 
L 5 HOH A 110 826 1110 HOH HOH . 
L 5 HOH A 111 827 1111 HOH HOH . 
L 5 HOH A 112 828 1112 HOH HOH . 
L 5 HOH A 113 829 1113 HOH HOH . 
L 5 HOH A 114 830 1114 HOH HOH . 
L 5 HOH A 115 831 1115 HOH HOH . 
L 5 HOH A 116 832 1116 HOH HOH . 
L 5 HOH A 117 833 1117 HOH HOH . 
L 5 HOH A 118 834 1118 HOH HOH . 
L 5 HOH A 119 835 1119 HOH HOH . 
L 5 HOH A 120 836 1120 HOH HOH . 
L 5 HOH A 121 837 1121 HOH HOH . 
L 5 HOH A 122 838 1122 HOH HOH . 
L 5 HOH A 123 839 1123 HOH HOH . 
L 5 HOH A 124 840 1124 HOH HOH . 
L 5 HOH A 125 841 1125 HOH HOH . 
L 5 HOH A 126 842 1126 HOH HOH . 
L 5 HOH A 127 843 1127 HOH HOH . 
L 5 HOH A 128 844 1128 HOH HOH . 
L 5 HOH A 129 845 1129 HOH HOH . 
L 5 HOH A 130 846 1130 HOH HOH . 
L 5 HOH A 131 847 1131 HOH HOH . 
L 5 HOH A 132 848 1132 HOH HOH . 
L 5 HOH A 133 849 1133 HOH HOH . 
L 5 HOH A 134 850 1134 HOH HOH . 
L 5 HOH A 135 851 1135 HOH HOH . 
L 5 HOH A 136 852 1136 HOH HOH . 
L 5 HOH A 137 853 1137 HOH HOH . 
L 5 HOH A 138 854 1138 HOH HOH . 
L 5 HOH A 139 855 1139 HOH HOH . 
L 5 HOH A 140 856 1140 HOH HOH . 
L 5 HOH A 141 857 1141 HOH HOH . 
L 5 HOH A 142 858 1142 HOH HOH . 
L 5 HOH A 143 859 1143 HOH HOH . 
L 5 HOH A 144 860 1144 HOH HOH . 
L 5 HOH A 145 861 1145 HOH HOH . 
L 5 HOH A 146 862 1146 HOH HOH . 
L 5 HOH A 147 863 1147 HOH HOH . 
L 5 HOH A 148 864 1148 HOH HOH . 
L 5 HOH A 149 865 1149 HOH HOH . 
L 5 HOH A 150 866 1150 HOH HOH . 
L 5 HOH A 151 867 1151 HOH HOH . 
L 5 HOH A 152 868 1152 HOH HOH . 
L 5 HOH A 153 869 1153 HOH HOH . 
L 5 HOH A 154 870 1154 HOH HOH . 
L 5 HOH A 155 871 1155 HOH HOH . 
L 5 HOH A 156 872 1156 HOH HOH . 
L 5 HOH A 157 873 1157 HOH HOH . 
L 5 HOH A 158 874 1158 HOH HOH . 
L 5 HOH A 159 875 1159 HOH HOH . 
L 5 HOH A 160 876 1160 HOH HOH . 
L 5 HOH A 161 877 1161 HOH HOH . 
L 5 HOH A 162 878 1162 HOH HOH . 
L 5 HOH A 163 879 1163 HOH HOH . 
L 5 HOH A 164 880 1164 HOH HOH . 
L 5 HOH A 165 881 1165 HOH HOH . 
L 5 HOH A 166 882 1166 HOH HOH . 
L 5 HOH A 167 883 1167 HOH HOH . 
L 5 HOH A 168 884 1168 HOH HOH . 
L 5 HOH A 169 885 1169 HOH HOH . 
L 5 HOH A 170 886 1170 HOH HOH . 
L 5 HOH A 171 887 1171 HOH HOH . 
L 5 HOH A 172 888 1172 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PRF . . . C 3 16.301 16.976 23.593 0.75 26.04 ? N1 PRF 600 A 1 
HETATM 2 C C2 PRF . . . C 3 15.084 16.432 23.233 0.75 25.7 ? C2 PRF 600 A 1 
HETATM 3 N N3 PRF . . . C 3 14.759 16.139 22.009 0.75 25.9 ? N3 PRF 600 A 1 
HETATM 4 C C4 PRF . . . C 3 15.781 16.422 20.994 0.75 24.56 ? C4 PRF 600 A 1 
HETATM 5 C C5 PRF . . . C 3 16.987 16.949 21.269 0.75 24.18 ? C5 PRF 600 A 1 
HETATM 6 C C6 PRF . . . C 3 17.264 17.249 22.688 0.75 23.62 ? C6 PRF 600 A 1 
HETATM 7 O O6 PRF . . . C 3 18.343 17.729 22.992 0.75 25.01 ? O6 PRF 600 A 1 
HETATM 8 C C7 PRF . . . C 3 17.638 17.048 19.999 0.75 23.12 ? C7 PRF 600 A 1 
HETATM 9 C C10 PRF . . . C 3 19.025 17.573 19.696 0.75 25.65 ? C10 PRF 600 A 1 
HETATM 10 N N11 PRF . . . C 3 19.263 17.4 18.252 0.75 31.26 ? N11 PRF 600 A 1 
HETATM 11 C C8 PRF . . . C 3 16.783 16.576 19.062 0.75 22.76 ? C8 PRF 600 A 1 
HETATM 12 N N9 PRF . . . C 3 15.608 16.178 19.675 0.75 22.86 ? N9 PRF 600 A 1 
HETATM 13 N N2 PRF . . . C 3 14.185 16.195 24.21 0.75 26.65 ? N2 PRF 600 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           13 
#