data_2Z1Z
#
_model_server_result.job_id            kTbEqLFDi1O8qqIb0lNxSw 
_model_server_result.datetime_utc      '2024-11-28 23:19:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2z1z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    2Z1Z 
#
_exptl.entry_id    2Z1Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2Z1Z 
_cell.length_a            102.587 
_cell.length_b            102.587 
_cell.length_c            172.939 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Z1Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             270 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              270 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            C4A 
_struct_conn.ptnr2_label_comp_id            PLP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             PLP 
_struct_conn.ptnr2_auth_seq_id              501 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.323 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 274 n y 
N1 C6 PLP sing 275 n y 
C2 C2A PLP sing 276 n n 
C2 C3 PLP sing 277 n y 
C2A H2A1 PLP sing 278 n n 
C2A H2A2 PLP sing 279 n n 
C2A H2A3 PLP sing 280 n n 
C3 O3 PLP sing 281 n n 
C3 C4 PLP doub 282 n y 
O3 HO3 PLP sing 283 n n 
C4 C4A PLP sing 284 n n 
C4 C5 PLP sing 285 n y 
C4A O4A PLP doub 286 n n 
C4A H4A PLP sing 287 n n 
C5 C6 PLP doub 288 n y 
C5 C5A PLP sing 289 n n 
C6 H6 PLP sing 290 n n 
C5A O4P PLP sing 291 n n 
C5A H5A1 PLP sing 292 n n 
C5A H5A2 PLP sing 293 n n 
O4P P PLP sing 294 n n 
P O1P PLP doub 295 n n 
P O2P PLP sing 296 n n 
P O3P PLP sing 297 n n 
O2P HOP2 PLP sing 298 n n 
O3P HOP3 PLP sing 299 n n 
#
_atom_sites.entry_id                     2Z1Z 
_atom_sites.fract_transf_matrix[1][1]    0.009748 
_atom_sites.fract_transf_matrix[1][2]    0.005628 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011256 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005782 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MLT A 1 433 428 MLT MLT . 
D 3 PLP A 1 500 427 PLP PLP . 
E 3 PLP B 1 501 427 PLP PLP . 
F 4 HOH A 1 501 3 HOH HOH . 
F 4 HOH A 2 502 6 HOH HOH . 
F 4 HOH A 3 503 9 HOH HOH . 
F 4 HOH A 4 504 10 HOH HOH . 
F 4 HOH A 5 505 11 HOH HOH . 
F 4 HOH A 6 506 13 HOH HOH . 
F 4 HOH A 7 507 15 HOH HOH . 
F 4 HOH A 8 508 18 HOH HOH . 
F 4 HOH A 9 509 26 HOH HOH . 
F 4 HOH A 10 510 27 HOH HOH . 
F 4 HOH A 11 511 29 HOH HOH . 
F 4 HOH A 12 512 34 HOH HOH . 
F 4 HOH A 13 513 39 HOH HOH . 
F 4 HOH A 14 514 40 HOH HOH . 
F 4 HOH A 15 515 41 HOH HOH . 
F 4 HOH A 16 516 45 HOH HOH . 
F 4 HOH A 17 517 49 HOH HOH . 
F 4 HOH A 18 518 50 HOH HOH . 
F 4 HOH A 19 519 55 HOH HOH . 
F 4 HOH A 20 520 57 HOH HOH . 
F 4 HOH A 21 521 58 HOH HOH . 
F 4 HOH A 22 522 59 HOH HOH . 
F 4 HOH A 23 523 60 HOH HOH . 
F 4 HOH A 24 524 62 HOH HOH . 
F 4 HOH A 25 525 67 HOH HOH . 
F 4 HOH A 26 526 69 HOH HOH . 
F 4 HOH A 27 527 73 HOH HOH . 
F 4 HOH A 28 528 74 HOH HOH . 
F 4 HOH A 29 529 75 HOH HOH . 
F 4 HOH A 30 530 79 HOH HOH . 
F 4 HOH A 31 531 83 HOH HOH . 
F 4 HOH A 32 532 84 HOH HOH . 
F 4 HOH A 33 533 85 HOH HOH . 
F 4 HOH A 34 534 86 HOH HOH . 
F 4 HOH A 35 535 88 HOH HOH . 
F 4 HOH A 36 536 92 HOH HOH . 
F 4 HOH A 37 537 93 HOH HOH . 
F 4 HOH A 38 538 96 HOH HOH . 
F 4 HOH A 39 539 97 HOH HOH . 
F 4 HOH A 40 540 103 HOH HOH . 
F 4 HOH A 41 541 106 HOH HOH . 
F 4 HOH A 42 542 108 HOH HOH . 
F 4 HOH A 43 543 109 HOH HOH . 
F 4 HOH A 44 544 114 HOH HOH . 
F 4 HOH A 45 545 116 HOH HOH . 
F 4 HOH A 46 546 119 HOH HOH . 
F 4 HOH A 47 547 122 HOH HOH . 
F 4 HOH A 48 548 127 HOH HOH . 
F 4 HOH A 49 549 134 HOH HOH . 
F 4 HOH A 50 550 135 HOH HOH . 
F 4 HOH A 51 551 137 HOH HOH . 
F 4 HOH A 52 552 139 HOH HOH . 
F 4 HOH A 53 553 140 HOH HOH . 
F 4 HOH A 54 554 141 HOH HOH . 
F 4 HOH A 55 555 143 HOH HOH . 
F 4 HOH A 56 556 147 HOH HOH . 
F 4 HOH A 57 557 150 HOH HOH . 
F 4 HOH A 58 558 153 HOH HOH . 
F 4 HOH A 59 559 154 HOH HOH . 
F 4 HOH A 60 560 155 HOH HOH . 
F 4 HOH A 61 561 156 HOH HOH . 
F 4 HOH A 62 562 157 HOH HOH . 
F 4 HOH A 63 563 158 HOH HOH . 
F 4 HOH A 64 564 159 HOH HOH . 
F 4 HOH A 65 565 161 HOH HOH . 
F 4 HOH A 66 566 168 HOH HOH . 
F 4 HOH A 67 567 170 HOH HOH . 
F 4 HOH A 68 568 173 HOH HOH . 
F 4 HOH A 69 569 174 HOH HOH . 
F 4 HOH A 70 570 175 HOH HOH . 
F 4 HOH A 71 571 176 HOH HOH . 
F 4 HOH A 72 572 177 HOH HOH . 
F 4 HOH A 73 573 178 HOH HOH . 
F 4 HOH A 74 574 185 HOH HOH . 
F 4 HOH A 75 575 186 HOH HOH . 
F 4 HOH A 76 576 187 HOH HOH . 
F 4 HOH A 77 577 188 HOH HOH . 
F 4 HOH A 78 578 189 HOH HOH . 
F 4 HOH A 79 579 190 HOH HOH . 
F 4 HOH A 80 580 191 HOH HOH . 
F 4 HOH A 81 581 192 HOH HOH . 
F 4 HOH A 82 582 193 HOH HOH . 
F 4 HOH A 83 583 194 HOH HOH . 
F 4 HOH A 84 584 196 HOH HOH . 
F 4 HOH A 85 585 201 HOH HOH . 
F 4 HOH A 86 586 205 HOH HOH . 
F 4 HOH A 87 587 206 HOH HOH . 
F 4 HOH A 88 588 207 HOH HOH . 
F 4 HOH A 89 589 209 HOH HOH . 
F 4 HOH A 90 590 211 HOH HOH . 
F 4 HOH A 91 591 221 HOH HOH . 
F 4 HOH A 92 592 228 HOH HOH . 
F 4 HOH A 93 593 229 HOH HOH . 
F 4 HOH A 94 594 232 HOH HOH . 
F 4 HOH A 95 595 233 HOH HOH . 
F 4 HOH A 96 596 235 HOH HOH . 
F 4 HOH A 97 597 236 HOH HOH . 
F 4 HOH A 98 598 237 HOH HOH . 
F 4 HOH A 99 599 238 HOH HOH . 
F 4 HOH A 100 600 243 HOH HOH . 
F 4 HOH A 101 601 248 HOH HOH . 
F 4 HOH A 102 602 249 HOH HOH . 
F 4 HOH A 103 603 250 HOH HOH . 
F 4 HOH A 104 604 252 HOH HOH . 
F 4 HOH A 105 605 253 HOH HOH . 
G 4 HOH B 1 502 2 HOH HOH . 
G 4 HOH B 2 503 4 HOH HOH . 
G 4 HOH B 3 504 7 HOH HOH . 
G 4 HOH B 4 505 8 HOH HOH . 
G 4 HOH B 5 506 12 HOH HOH . 
G 4 HOH B 6 507 14 HOH HOH . 
G 4 HOH B 7 508 16 HOH HOH . 
G 4 HOH B 8 509 17 HOH HOH . 
G 4 HOH B 9 510 19 HOH HOH . 
G 4 HOH B 10 511 20 HOH HOH . 
G 4 HOH B 11 512 21 HOH HOH . 
G 4 HOH B 12 513 22 HOH HOH . 
G 4 HOH B 13 514 23 HOH HOH . 
G 4 HOH B 14 515 24 HOH HOH . 
G 4 HOH B 15 516 25 HOH HOH . 
G 4 HOH B 16 517 28 HOH HOH . 
G 4 HOH B 17 518 31 HOH HOH . 
G 4 HOH B 18 519 32 HOH HOH . 
G 4 HOH B 19 520 33 HOH HOH . 
G 4 HOH B 20 521 35 HOH HOH . 
G 4 HOH B 21 522 38 HOH HOH . 
G 4 HOH B 22 523 42 HOH HOH . 
G 4 HOH B 23 524 44 HOH HOH . 
G 4 HOH B 24 525 46 HOH HOH . 
G 4 HOH B 25 526 47 HOH HOH . 
G 4 HOH B 26 527 48 HOH HOH . 
G 4 HOH B 27 528 51 HOH HOH . 
G 4 HOH B 28 529 53 HOH HOH . 
G 4 HOH B 29 530 54 HOH HOH . 
G 4 HOH B 30 531 56 HOH HOH . 
G 4 HOH B 31 532 61 HOH HOH . 
G 4 HOH B 32 533 63 HOH HOH . 
G 4 HOH B 33 534 64 HOH HOH . 
G 4 HOH B 34 535 65 HOH HOH . 
G 4 HOH B 35 536 68 HOH HOH . 
G 4 HOH B 36 537 70 HOH HOH . 
G 4 HOH B 37 538 71 HOH HOH . 
G 4 HOH B 38 539 72 HOH HOH . 
G 4 HOH B 39 540 76 HOH HOH . 
G 4 HOH B 40 541 77 HOH HOH . 
G 4 HOH B 41 542 78 HOH HOH . 
G 4 HOH B 42 543 80 HOH HOH . 
G 4 HOH B 43 544 81 HOH HOH . 
G 4 HOH B 44 545 82 HOH HOH . 
G 4 HOH B 45 546 87 HOH HOH . 
G 4 HOH B 46 547 89 HOH HOH . 
G 4 HOH B 47 548 90 HOH HOH . 
G 4 HOH B 48 549 91 HOH HOH . 
G 4 HOH B 49 550 94 HOH HOH . 
G 4 HOH B 50 551 95 HOH HOH . 
G 4 HOH B 51 552 98 HOH HOH . 
G 4 HOH B 52 553 99 HOH HOH . 
G 4 HOH B 53 554 100 HOH HOH . 
G 4 HOH B 54 555 101 HOH HOH . 
G 4 HOH B 55 556 102 HOH HOH . 
G 4 HOH B 56 557 104 HOH HOH . 
G 4 HOH B 57 558 105 HOH HOH . 
G 4 HOH B 58 559 107 HOH HOH . 
G 4 HOH B 59 560 110 HOH HOH . 
G 4 HOH B 60 561 111 HOH HOH . 
G 4 HOH B 61 562 112 HOH HOH . 
G 4 HOH B 62 563 113 HOH HOH . 
G 4 HOH B 63 564 115 HOH HOH . 
G 4 HOH B 64 565 117 HOH HOH . 
G 4 HOH B 65 566 118 HOH HOH . 
G 4 HOH B 66 567 121 HOH HOH . 
G 4 HOH B 67 568 123 HOH HOH . 
G 4 HOH B 68 569 124 HOH HOH . 
G 4 HOH B 69 570 126 HOH HOH . 
G 4 HOH B 70 571 128 HOH HOH . 
G 4 HOH B 71 572 130 HOH HOH . 
G 4 HOH B 72 573 131 HOH HOH . 
G 4 HOH B 73 574 132 HOH HOH . 
G 4 HOH B 74 575 133 HOH HOH . 
G 4 HOH B 75 576 136 HOH HOH . 
G 4 HOH B 76 577 138 HOH HOH . 
G 4 HOH B 77 578 142 HOH HOH . 
G 4 HOH B 78 579 144 HOH HOH . 
G 4 HOH B 79 580 145 HOH HOH . 
G 4 HOH B 80 581 146 HOH HOH . 
G 4 HOH B 81 582 148 HOH HOH . 
G 4 HOH B 82 583 149 HOH HOH . 
G 4 HOH B 83 584 151 HOH HOH . 
G 4 HOH B 84 585 152 HOH HOH . 
G 4 HOH B 85 586 160 HOH HOH . 
G 4 HOH B 86 587 163 HOH HOH . 
G 4 HOH B 87 588 165 HOH HOH . 
G 4 HOH B 88 589 166 HOH HOH . 
G 4 HOH B 89 590 167 HOH HOH . 
G 4 HOH B 90 591 169 HOH HOH . 
G 4 HOH B 91 592 172 HOH HOH . 
G 4 HOH B 92 593 179 HOH HOH . 
G 4 HOH B 93 594 180 HOH HOH . 
G 4 HOH B 94 595 181 HOH HOH . 
G 4 HOH B 95 596 182 HOH HOH . 
G 4 HOH B 96 597 183 HOH HOH . 
G 4 HOH B 97 598 184 HOH HOH . 
G 4 HOH B 98 599 195 HOH HOH . 
G 4 HOH B 99 600 197 HOH HOH . 
G 4 HOH B 100 601 198 HOH HOH . 
G 4 HOH B 101 602 199 HOH HOH . 
G 4 HOH B 102 603 200 HOH HOH . 
G 4 HOH B 103 604 208 HOH HOH . 
G 4 HOH B 104 605 210 HOH HOH . 
G 4 HOH B 105 606 213 HOH HOH . 
G 4 HOH B 106 607 218 HOH HOH . 
G 4 HOH B 107 608 222 HOH HOH . 
G 4 HOH B 108 609 224 HOH HOH . 
G 4 HOH B 109 610 230 HOH HOH . 
G 4 HOH B 110 611 234 HOH HOH . 
G 4 HOH B 111 612 239 HOH HOH . 
G 4 HOH B 112 613 240 HOH HOH . 
G 4 HOH B 113 614 241 HOH HOH . 
G 4 HOH B 114 615 244 HOH HOH . 
G 4 HOH B 115 616 245 HOH HOH . 
G 4 HOH B 116 617 246 HOH HOH . 
G 4 HOH B 117 618 247 HOH HOH . 
G 4 HOH B 118 619 251 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . D 3 15.718 -27.898 26.683 1 47.31 ? N1 PLP 500 A 1 
HETATM 2 C C2 PLP . . . D 3 15.662 -26.934 27.672 1 49.74 ? C2 PLP 500 A 1 
HETATM 3 C C2A PLP . . . D 3 14.955 -25.622 27.405 1 48.24 ? C2A PLP 500 A 1 
HETATM 4 C C3 PLP . . . D 3 16.276 -27.194 28.936 1 51.4 ? C3 PLP 500 A 1 
HETATM 5 O O3 PLP . . . D 3 16.287 -26.391 29.905 1 51.14 ? O3 PLP 500 A 1 
HETATM 6 C C4 PLP . . . D 3 16.899 -28.425 29.163 1 53.05 ? C4 PLP 500 A 1 
HETATM 7 C C4A PLP . . . D 3 17.532 -28.804 30.49 1 49.69 ? C4A PLP 500 A 1 
HETATM 8 C C5 PLP . . . D 3 16.925 -29.385 28.171 1 51.45 ? C5 PLP 500 A 1 
HETATM 9 C C6 PLP . . . D 3 16.318 -29.106 26.911 1 50.78 ? C6 PLP 500 A 1 
HETATM 10 C C5A PLP . . . D 3 17.659 -30.619 28.659 1 51.15 ? C5A PLP 500 A 1 
HETATM 11 O O4P PLP . . . D 3 17.768 -31.724 27.763 1 54.38 ? O4P PLP 500 A 1 
HETATM 12 P P PLP . . . D 3 18.645 -33.049 28.214 1 53.6 ? P PLP 500 A 1 
HETATM 13 O O1P PLP . . . D 3 19.656 -33.075 27.02 1 52.83 ? O1P PLP 500 A 1 
HETATM 14 O O2P PLP . . . D 3 19.28 -32.644 29.538 1 51.94 ? O2P PLP 500 A 1 
HETATM 15 O O3P PLP . . . D 3 17.673 -34.235 28.346 1 46.01 ? O3P PLP 500 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#