data_2Z2F
#
_model_server_result.job_id            N8XoTfo7OB-_n7i1JAK35A 
_model_server_result.datetime_utc      '2025-01-05 05:24:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2z2f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    2Z2F 
#
_exptl.entry_id    2Z2F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Z2F 
_cell.length_a            31.257 
_cell.length_b            56.065 
_cell.length_c            64.05 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Z2F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf3 A SG CYS 65 A CYS 65 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf4 A SG CYS 77 A CYS 77 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     2Z2F 
_atom_sites.fract_transf_matrix[1][1]    0.031993 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017836 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 2001 2001 NA NA . 
C 3 MPD A 1 1001 1001 MPD MPD . 
D 3 MPD A 1 1002 1002 MPD MPD . 
E 4 HOH A 1 2002 1 HOH HOH . 
E 4 HOH A 2 2003 2 HOH HOH . 
E 4 HOH A 3 2004 3 HOH HOH . 
E 4 HOH A 4 2005 4 HOH HOH . 
E 4 HOH A 5 2006 5 HOH HOH . 
E 4 HOH A 6 2007 6 HOH HOH . 
E 4 HOH A 7 2008 7 HOH HOH . 
E 4 HOH A 8 2009 8 HOH HOH . 
E 4 HOH A 9 2010 9 HOH HOH . 
E 4 HOH A 10 2011 10 HOH HOH . 
E 4 HOH A 11 2012 11 HOH HOH . 
E 4 HOH A 12 2013 12 HOH HOH . 
E 4 HOH A 13 2014 13 HOH HOH . 
E 4 HOH A 14 2015 14 HOH HOH . 
E 4 HOH A 15 2016 15 HOH HOH . 
E 4 HOH A 16 2017 16 HOH HOH . 
E 4 HOH A 17 2018 17 HOH HOH . 
E 4 HOH A 18 2019 18 HOH HOH . 
E 4 HOH A 19 2020 19 HOH HOH . 
E 4 HOH A 20 2021 20 HOH HOH . 
E 4 HOH A 21 2022 21 HOH HOH . 
E 4 HOH A 22 2023 22 HOH HOH . 
E 4 HOH A 23 2024 23 HOH HOH . 
E 4 HOH A 24 2025 24 HOH HOH . 
E 4 HOH A 25 2026 25 HOH HOH . 
E 4 HOH A 26 2027 26 HOH HOH . 
E 4 HOH A 27 2028 27 HOH HOH . 
E 4 HOH A 28 2029 28 HOH HOH . 
E 4 HOH A 29 2030 29 HOH HOH . 
E 4 HOH A 30 2031 30 HOH HOH . 
E 4 HOH A 31 2032 31 HOH HOH . 
E 4 HOH A 32 2033 32 HOH HOH . 
E 4 HOH A 33 2034 33 HOH HOH . 
E 4 HOH A 34 2035 34 HOH HOH . 
E 4 HOH A 35 2036 35 HOH HOH . 
E 4 HOH A 36 2037 36 HOH HOH . 
E 4 HOH A 37 2038 37 HOH HOH . 
E 4 HOH A 38 2039 38 HOH HOH . 
E 4 HOH A 39 2040 39 HOH HOH . 
E 4 HOH A 40 2041 40 HOH HOH . 
E 4 HOH A 41 2042 41 HOH HOH . 
E 4 HOH A 42 2043 42 HOH HOH . 
E 4 HOH A 43 2044 43 HOH HOH . 
E 4 HOH A 44 2045 44 HOH HOH . 
E 4 HOH A 45 2046 45 HOH HOH . 
E 4 HOH A 46 2047 46 HOH HOH . 
E 4 HOH A 47 2048 47 HOH HOH . 
E 4 HOH A 48 2049 48 HOH HOH . 
E 4 HOH A 49 2050 49 HOH HOH . 
E 4 HOH A 50 2051 50 HOH HOH . 
E 4 HOH A 51 2052 51 HOH HOH . 
E 4 HOH A 52 2053 52 HOH HOH . 
E 4 HOH A 53 2054 53 HOH HOH . 
E 4 HOH A 54 2055 54 HOH HOH . 
E 4 HOH A 55 2056 55 HOH HOH . 
E 4 HOH A 56 2057 56 HOH HOH . 
E 4 HOH A 57 2058 57 HOH HOH . 
E 4 HOH A 58 2059 58 HOH HOH . 
E 4 HOH A 59 2060 59 HOH HOH . 
E 4 HOH A 60 2061 60 HOH HOH . 
E 4 HOH A 61 2062 61 HOH HOH . 
E 4 HOH A 62 2063 62 HOH HOH . 
E 4 HOH A 63 2064 63 HOH HOH . 
E 4 HOH A 64 2065 64 HOH HOH . 
E 4 HOH A 65 2066 65 HOH HOH . 
E 4 HOH A 66 2067 66 HOH HOH . 
E 4 HOH A 67 2068 67 HOH HOH . 
E 4 HOH A 68 2069 68 HOH HOH . 
E 4 HOH A 69 2070 69 HOH HOH . 
E 4 HOH A 70 2071 70 HOH HOH . 
E 4 HOH A 71 2072 71 HOH HOH . 
E 4 HOH A 72 2073 72 HOH HOH . 
E 4 HOH A 73 2074 73 HOH HOH . 
E 4 HOH A 74 2075 74 HOH HOH . 
E 4 HOH A 75 2076 75 HOH HOH . 
E 4 HOH A 76 2077 76 HOH HOH . 
E 4 HOH A 77 2078 77 HOH HOH . 
E 4 HOH A 78 2079 78 HOH HOH . 
E 4 HOH A 79 2080 79 HOH HOH . 
E 4 HOH A 80 2081 80 HOH HOH . 
E 4 HOH A 81 2082 81 HOH HOH . 
E 4 HOH A 82 2083 82 HOH HOH . 
E 4 HOH A 83 2084 83 HOH HOH . 
E 4 HOH A 84 2085 84 HOH HOH . 
E 4 HOH A 85 2086 85 HOH HOH . 
E 4 HOH A 86 2087 86 HOH HOH . 
E 4 HOH A 87 2088 87 HOH HOH . 
E 4 HOH A 88 2089 88 HOH HOH . 
E 4 HOH A 89 2090 89 HOH HOH . 
E 4 HOH A 90 2091 90 HOH HOH . 
E 4 HOH A 91 2092 91 HOH HOH . 
E 4 HOH A 92 2093 92 HOH HOH . 
E 4 HOH A 93 2094 93 HOH HOH . 
E 4 HOH A 94 2095 94 HOH HOH . 
E 4 HOH A 95 2096 95 HOH HOH . 
E 4 HOH A 96 2097 96 HOH HOH . 
E 4 HOH A 97 2098 97 HOH HOH . 
E 4 HOH A 98 2099 98 HOH HOH . 
E 4 HOH A 99 2100 99 HOH HOH . 
E 4 HOH A 100 2101 100 HOH HOH . 
E 4 HOH A 101 2102 101 HOH HOH . 
E 4 HOH A 102 2103 102 HOH HOH . 
E 4 HOH A 103 2104 103 HOH HOH . 
E 4 HOH A 104 2105 104 HOH HOH . 
E 4 HOH A 105 2106 105 HOH HOH . 
E 4 HOH A 106 2107 106 HOH HOH . 
E 4 HOH A 107 2108 107 HOH HOH . 
E 4 HOH A 108 2109 108 HOH HOH . 
E 4 HOH A 109 2110 109 HOH HOH . 
E 4 HOH A 110 2111 110 HOH HOH . 
E 4 HOH A 111 2112 111 HOH HOH . 
E 4 HOH A 112 2113 112 HOH HOH . 
E 4 HOH A 113 2114 113 HOH HOH . 
E 4 HOH A 114 2115 114 HOH HOH . 
E 4 HOH A 115 2116 115 HOH HOH . 
E 4 HOH A 116 2117 116 HOH HOH . 
E 4 HOH A 117 2118 117 HOH HOH . 
E 4 HOH A 118 2119 118 HOH HOH . 
E 4 HOH A 119 2120 119 HOH HOH . 
E 4 HOH A 120 2121 120 HOH HOH . 
E 4 HOH A 121 2122 121 HOH HOH . 
E 4 HOH A 122 2123 122 HOH HOH . 
E 4 HOH A 123 2124 123 HOH HOH . 
E 4 HOH A 124 2125 124 HOH HOH . 
E 4 HOH A 125 2126 125 HOH HOH . 
E 4 HOH A 126 2127 126 HOH HOH . 
E 4 HOH A 127 2128 127 HOH HOH . 
E 4 HOH A 128 2129 128 HOH HOH . 
E 4 HOH A 129 2130 129 HOH HOH . 
E 4 HOH A 130 2131 130 HOH HOH . 
E 4 HOH A 131 2132 131 HOH HOH . 
E 4 HOH A 132 2133 132 HOH HOH . 
E 4 HOH A 133 2134 133 HOH HOH . 
E 4 HOH A 134 2135 134 HOH HOH . 
E 4 HOH A 135 2136 135 HOH HOH . 
E 4 HOH A 136 2137 136 HOH HOH . 
E 4 HOH A 137 2138 137 HOH HOH . 
E 4 HOH A 138 2139 138 HOH HOH . 
E 4 HOH A 139 2140 139 HOH HOH . 
E 4 HOH A 140 2141 140 HOH HOH . 
E 4 HOH A 141 2142 141 HOH HOH . 
E 4 HOH A 142 2143 142 HOH HOH . 
E 4 HOH A 143 2144 143 HOH HOH . 
E 4 HOH A 144 2145 144 HOH HOH . 
E 4 HOH A 145 2146 145 HOH HOH . 
E 4 HOH A 146 2147 146 HOH HOH . 
E 4 HOH A 147 2148 147 HOH HOH . 
E 4 HOH A 148 2149 148 HOH HOH . 
E 4 HOH A 149 2150 149 HOH HOH . 
E 4 HOH A 150 2151 150 HOH HOH . 
E 4 HOH A 151 2152 151 HOH HOH . 
E 4 HOH A 152 2153 152 HOH HOH . 
E 4 HOH A 153 2154 153 HOH HOH . 
E 4 HOH A 154 2155 154 HOH HOH . 
E 4 HOH A 155 2156 155 HOH HOH . 
E 4 HOH A 156 2157 156 HOH HOH . 
E 4 HOH A 157 2158 157 HOH HOH . 
E 4 HOH A 158 2159 158 HOH HOH . 
E 4 HOH A 159 2160 159 HOH HOH . 
E 4 HOH A 160 2161 160 HOH HOH . 
E 4 HOH A 161 2162 161 HOH HOH . 
E 4 HOH A 162 2163 162 HOH HOH . 
E 4 HOH A 163 2164 163 HOH HOH . 
E 4 HOH A 164 2165 164 HOH HOH . 
E 4 HOH A 165 2166 165 HOH HOH . 
E 4 HOH A 166 2167 166 HOH HOH . 
E 4 HOH A 167 2168 167 HOH HOH . 
E 4 HOH A 168 2169 168 HOH HOH . 
E 4 HOH A 169 2170 169 HOH HOH . 
E 4 HOH A 170 2171 170 HOH HOH . 
E 4 HOH A 171 2172 171 HOH HOH . 
E 4 HOH A 172 2173 172 HOH HOH . 
E 4 HOH A 173 2174 173 HOH HOH . 
E 4 HOH A 174 2175 174 HOH HOH . 
E 4 HOH A 175 2176 175 HOH HOH . 
E 4 HOH A 176 2177 176 HOH HOH . 
E 4 HOH A 177 2178 177 HOH HOH . 
E 4 HOH A 178 2179 178 HOH HOH . 
E 4 HOH A 179 2180 179 HOH HOH . 
E 4 HOH A 180 2181 180 HOH HOH . 
E 4 HOH A 181 2182 181 HOH HOH . 
E 4 HOH A 182 2183 182 HOH HOH . 
E 4 HOH A 183 2184 183 HOH HOH . 
E 4 HOH A 184 2185 184 HOH HOH . 
E 4 HOH A 185 2186 185 HOH HOH . 
E 4 HOH A 186 2187 186 HOH HOH . 
E 4 HOH A 187 2188 187 HOH HOH . 
E 4 HOH A 188 2189 188 HOH HOH . 
E 4 HOH A 189 2190 189 HOH HOH . 
E 4 HOH A 190 2191 190 HOH HOH . 
E 4 HOH A 191 2192 191 HOH HOH . 
E 4 HOH A 192 2193 192 HOH HOH . 
E 4 HOH A 193 2194 193 HOH HOH . 
E 4 HOH A 194 2195 194 HOH HOH . 
E 4 HOH A 195 2196 195 HOH HOH . 
E 4 HOH A 196 2197 196 HOH HOH . 
E 4 HOH A 197 2198 197 HOH HOH . 
E 4 HOH A 198 2199 198 HOH HOH . 
E 4 HOH A 199 2200 199 HOH HOH . 
E 4 HOH A 200 2201 200 HOH HOH . 
E 4 HOH A 201 2202 201 HOH HOH . 
E 4 HOH A 202 2203 202 HOH HOH . 
E 4 HOH A 203 2204 203 HOH HOH . 
E 4 HOH A 204 2205 204 HOH HOH . 
E 4 HOH A 205 2206 205 HOH HOH . 
E 4 HOH A 206 2207 206 HOH HOH . 
E 4 HOH A 207 2208 207 HOH HOH . 
E 4 HOH A 208 2209 208 HOH HOH . 
E 4 HOH A 209 2210 209 HOH HOH . 
E 4 HOH A 210 2211 210 HOH HOH . 
E 4 HOH A 211 2212 211 HOH HOH . 
E 4 HOH A 212 2213 212 HOH HOH . 
E 4 HOH A 213 2214 213 HOH HOH . 
E 4 HOH A 214 2215 214 HOH HOH . 
E 4 HOH A 215 2216 215 HOH HOH . 
E 4 HOH A 216 2217 216 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 3 -9.538 4.436 -13.475 1 26.5 ? C1 MPD 1002 A 1 
HETATM 2 C C2 MPD . . . D 3 -10.385 5.347 -12.594 1 27.4 ? C2 MPD 1002 A 1 
HETATM 3 O O2 MPD . . . D 3 -10.23 6.717 -13.051 1 28.06 ? O2 MPD 1002 A 1 
HETATM 4 C CM MPD . . . D 3 -11.855 4.995 -12.781 1 27.01 ? CM MPD 1002 A 1 
HETATM 5 C C3 MPD . . . D 3 -10.011 5.26 -11.107 1 27.17 ? C3 MPD 1002 A 1 
HETATM 6 C C4 MPD . . . D 3 -8.521 5.317 -10.746 1 28.02 ? C4 MPD 1002 A 1 
HETATM 7 O O4 MPD . . . D 3 -7.847 4.162 -11.192 1 28.36 ? O4 MPD 1002 A 1 
HETATM 8 C C5 MPD . . . D 3 -7.822 6.538 -11.323 1 26.83 ? C5 MPD 1002 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           8 
#