data_2Z2P # _model_server_result.job_id 6yUFy7NA-qTaZMbYjJCDWQ _model_server_result.datetime_utc '2024-11-01 08:20:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1004}' # _entry.id 2Z2P # _exptl.entry_id 2Z2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z2P _cell.length_a 70.999 _cell.length_b 93.7 _cell.length_c 95.301 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C MHW 1 C MHW 1 1_555 C N THR 2 C THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 C C THR 2 C THR 2 1_555 C N DBB 3 C DBB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 C OG1 THR 2 C THR 2 1_555 C C 004 7 C 004 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 C C DBB 3 C DBB 3 1_555 C N PRO 4 C PRO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale5 C C PRO 4 C PRO 4 1_555 C N MHU 5 C MHU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale6 C C MHU 5 C MHU 5 1_555 C N MHV 6 C MHV 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale7 C C MHV 6 C MHV 6 1_555 C N 004 7 C 004 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 C CD2 MHV 6 C MHV 6 1_555 C CM MHT 8 C MHT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.565 ? covale ? covale9 D C MHW 1 D MHW 1 1_555 D N THR 2 D THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale10 D C THR 2 D THR 2 1_555 D N DBB 3 D DBB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale11 D OG1 THR 2 D THR 2 1_555 D C 004 7 D 004 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 D C DBB 3 D DBB 3 1_555 D N PRO 4 D PRO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale13 D C PRO 4 D PRO 4 1_555 D N MHU 5 D MHU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale14 D C MHU 5 D MHU 5 1_555 D N MHV 6 D MHV 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale15 D C MHV 6 D MHV 6 1_555 D N 004 7 D 004 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale16 D CD2 MHV 6 D MHV 6 1_555 D CM MHT 8 D MHT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.563 ? metalc ? metalc1 A OD2 ASP 67 A ASP 67 1_555 F MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc2 A OE2 GLU 69 A GLU 69 1_555 F MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc3 A OD2 ASP 127 A ASP 127 1_555 F MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 A OD1 ASP 127 A ASP 127 1_555 F MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc5 A OE1 GLU 268 A GLU 268 1_555 E MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc6 A OE1 GLU 284 A GLU 284 1_555 E MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc7 E MG MG . A MG 1001 1_555 C O MHW 1 C MHW 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc8 E MG MG . A MG 1001 1_555 C OG1 MHW 1 C MHW 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.707 ? metalc ? metalc9 B OD2 ASP 67 B ASP 67 1_555 I MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc10 B OE2 GLU 69 B GLU 69 1_555 I MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc11 B OD1 ASP 127 B ASP 127 1_555 I MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc12 B OD2 ASP 127 B ASP 127 1_555 I MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc13 B OE1 GLU 268 B GLU 268 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc14 B OE1 GLU 284 B GLU 284 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc15 H MG MG . B MG 1002 1_555 D O MHW 1 D MHW 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc16 H MG MG . B MG 1002 1_555 D OG1 MHW 1 D MHW 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2Z2P _atom_sites.fract_transf_matrix[1][1] 0.014085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 1001 1001 MG MG . F 3 MG A 1 1003 1003 MG MG . G 4 DOL A 1 2002 2002 DOL DOL . H 3 MG B 1 1002 1002 MG MG . I 3 MG B 1 1004 1004 MG MG . J 4 DOL B 1 2003 2003 DOL DOL . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x -50.295 _atom_site.Cartn_y 19.78 _atom_site.Cartn_z -11.089 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1004 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #