data_2Z36 # _model_server_result.job_id 9Bv0435_crsvgjPX99-gIQ _model_server_result.datetime_utc '2024-10-16 16:28:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":460}' # _entry.id 2Z36 # _exptl.entry_id 2Z36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z36 _cell.length_a 81.557 _cell.length_b 83.256 _cell.length_c 175.851 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 132 A HIS 132 2_554 F FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 A OD2 ASP 136 A ASP 136 2_554 F FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc3 A OD1 ASP 136 A ASP 136 2_554 F FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A SG CYS 356 A CYS 356 1_555 D FE HEM . A HEM 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc5 A NE2 HIS 410 A HIS 410 1_555 C FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc6 A NE2 HIS 412 A HIS 412 1_555 C FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc7 C FE FE . A FE 602 1_555 B NE2 HIS 132 B HIS 132 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc8 C FE FE . A FE 602 1_555 B OD1 ASP 136 B ASP 136 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc9 B SG CYS 356 B CYS 356 1_555 G FE HEM . B HEM 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc10 B NE2 HIS 410 B HIS 410 1_555 F FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc11 B NE2 HIS 412 B HIS 412 1_555 F FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2Z36 _atom_sites.fract_transf_matrix[1][1] 0.012261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 602 602 FE FE3 . D 3 HEM A 1 450 450 HEM HEM . E 4 MES A 1 4574 4574 MES MES . F 2 FE B 1 601 601 FE FE3 . G 3 HEM B 1 460 460 HEM HEM . H 4 MES B 1 4575 4575 MES MES . I 5 HOH A 1 501 501 HOH WAT . I 5 HOH A 2 502 502 HOH WAT . I 5 HOH A 3 503 503 HOH WAT . I 5 HOH A 4 504 504 HOH WAT . I 5 HOH A 5 505 505 HOH WAT . I 5 HOH A 6 507 507 HOH WAT . I 5 HOH A 7 508 508 HOH WAT . I 5 HOH A 8 509 509 HOH WAT . I 5 HOH A 9 510 510 HOH WAT . I 5 HOH A 10 511 511 HOH WAT . I 5 HOH A 11 512 512 HOH WAT . I 5 HOH A 12 513 513 HOH WAT . I 5 HOH A 13 520 520 HOH WAT . I 5 HOH A 14 522 522 HOH WAT . I 5 HOH A 15 523 523 HOH WAT . I 5 HOH A 16 524 524 HOH WAT . I 5 HOH A 17 525 525 HOH WAT . I 5 HOH A 18 526 526 HOH WAT . I 5 HOH A 19 527 527 HOH WAT . I 5 HOH A 20 528 528 HOH WAT . I 5 HOH A 21 529 529 HOH WAT . I 5 HOH A 22 530 530 HOH WAT . I 5 HOH A 23 531 531 HOH WAT . I 5 HOH A 24 532 532 HOH WAT . I 5 HOH A 25 533 533 HOH WAT . I 5 HOH A 26 534 534 HOH WAT . I 5 HOH A 27 535 535 HOH WAT . I 5 HOH A 28 536 536 HOH WAT . I 5 HOH A 29 537 537 HOH WAT . I 5 HOH A 30 541 541 HOH WAT . I 5 HOH A 31 550 550 HOH WAT . I 5 HOH A 32 551 551 HOH WAT . I 5 HOH A 33 552 552 HOH WAT . I 5 HOH A 34 553 553 HOH WAT . I 5 HOH A 35 554 554 HOH WAT . I 5 HOH A 36 555 555 HOH WAT . I 5 HOH A 37 558 558 HOH WAT . I 5 HOH A 38 559 559 HOH WAT . I 5 HOH A 39 560 560 HOH WAT . I 5 HOH A 40 565 565 HOH WAT . I 5 HOH A 41 566 566 HOH WAT . J 5 HOH B 1 506 506 HOH WAT . J 5 HOH B 2 514 514 HOH WAT . J 5 HOH B 3 515 515 HOH WAT . J 5 HOH B 4 516 516 HOH WAT . J 5 HOH B 5 517 517 HOH WAT . J 5 HOH B 6 518 518 HOH WAT . J 5 HOH B 7 519 519 HOH WAT . J 5 HOH B 8 521 521 HOH WAT . J 5 HOH B 9 538 538 HOH WAT . J 5 HOH B 10 539 539 HOH WAT . J 5 HOH B 11 540 540 HOH WAT . J 5 HOH B 12 542 542 HOH WAT . J 5 HOH B 13 543 543 HOH WAT . J 5 HOH B 14 544 544 HOH WAT . J 5 HOH B 15 545 545 HOH WAT . J 5 HOH B 16 546 546 HOH WAT . J 5 HOH B 17 547 547 HOH WAT . J 5 HOH B 18 548 548 HOH WAT . J 5 HOH B 19 549 549 HOH WAT . J 5 HOH B 20 556 556 HOH WAT . J 5 HOH B 21 557 557 HOH WAT . J 5 HOH B 22 561 561 HOH WAT . J 5 HOH B 23 562 562 HOH WAT . J 5 HOH B 24 563 563 HOH WAT . J 5 HOH B 25 564 564 HOH WAT . J 5 HOH B 26 567 567 HOH WAT . J 5 HOH B 27 568 568 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 3 10.622 -17.299 -37.151 1 24.15 ? CHA HEM 460 B 1 HETATM 2 C CHB HEM . . . G 3 12.48 -19.207 -41.046 1 26.48 ? CHB HEM 460 B 1 HETATM 3 C CHC HEM . . . G 3 14.427 -15.043 -42.202 1 29.24 ? CHC HEM 460 B 1 HETATM 4 C CHD HEM . . . G 3 12.421 -13.046 -38.343 1 28.71 ? CHD HEM 460 B 1 HETATM 5 C C1A HEM . . . G 3 10.911 -18.144 -38.145 1 25.57 ? C1A HEM 460 B 1 HETATM 6 C C2A HEM . . . G 3 10.446 -19.492 -38.225 1 22.52 ? C2A HEM 460 B 1 HETATM 7 C C3A HEM . . . G 3 10.968 -20.02 -39.329 1 24.91 ? C3A HEM 460 B 1 HETATM 8 C C4A HEM . . . G 3 11.766 -19.016 -39.931 1 22.43 ? C4A HEM 460 B 1 HETATM 9 C CMA HEM . . . G 3 10.757 -21.433 -39.837 1 17.53 ? CMA HEM 460 B 1 HETATM 10 C CAA HEM . . . G 3 9.521 -20.21 -37.24 1 16.92 ? CAA HEM 460 B 1 HETATM 11 C CBA HEM . . . G 3 10.275 -20.957 -36.128 1 22.22 ? CBA HEM 460 B 1 HETATM 12 C CGA HEM . . . G 3 9.286 -21.652 -35.197 1 27.01 ? CGA HEM 460 B 1 HETATM 13 O O1A HEM . . . G 3 8.09 -21.575 -35.389 1 17.29 ? O1A HEM 460 B 1 HETATM 14 O O2A HEM . . . G 3 9.732 -22.364 -34.149 1 20.5 ? O2A HEM 460 B 1 HETATM 15 C C1B HEM . . . G 3 13.252 -18.26 -41.639 1 28.07 ? C1B HEM 460 B 1 HETATM 16 C C2B HEM . . . G 3 14.018 -18.544 -42.815 1 20.72 ? C2B HEM 460 B 1 HETATM 17 C C3B HEM . . . G 3 14.584 -17.41 -43.202 1 27.48 ? C3B HEM 460 B 1 HETATM 18 C C4B HEM . . . G 3 14.131 -16.383 -42.17 1 28.34 ? C4B HEM 460 B 1 HETATM 19 C CMB HEM . . . G 3 14.144 -19.89 -43.505 1 25.57 ? CMB HEM 460 B 1 HETATM 20 C CAB HEM . . . G 3 15.458 -17.266 -44.419 1 22.73 ? CAB HEM 460 B 1 HETATM 21 C CBB HEM . . . G 3 16.013 -16.128 -44.814 1 21.55 ? CBB HEM 460 B 1 HETATM 22 C C1C HEM . . . G 3 14.003 -14.115 -41.296 1 29.88 ? C1C HEM 460 B 1 HETATM 23 C C2C HEM . . . G 3 14.265 -12.729 -41.386 1 24.08 ? C2C HEM 460 B 1 HETATM 24 C C3C HEM . . . G 3 13.681 -12.131 -40.295 1 29.11 ? C3C HEM 460 B 1 HETATM 25 C C4C HEM . . . G 3 13.076 -13.197 -39.532 1 30.89 ? C4C HEM 460 B 1 HETATM 26 C CMC HEM . . . G 3 15.046 -12.044 -42.497 1 16.9 ? CMC HEM 460 B 1 HETATM 27 C CAC HEM . . . G 3 13.674 -10.676 -39.956 1 33.24 ? CAC HEM 460 B 1 HETATM 28 C CBC HEM . . . G 3 14.756 -10.072 -39.466 1 38.12 ? CBC HEM 460 B 1 HETATM 29 C C1D HEM . . . G 3 11.851 -14.103 -37.641 1 28.94 ? C1D HEM 460 B 1 HETATM 30 C C2D HEM . . . G 3 11.228 -13.933 -36.293 1 21.31 ? C2D HEM 460 B 1 HETATM 31 C C3D HEM . . . G 3 10.731 -15.109 -35.968 1 22.38 ? C3D HEM 460 B 1 HETATM 32 C C4D HEM . . . G 3 11.048 -16.016 -37.101 1 24.46 ? C4D HEM 460 B 1 HETATM 33 C CMD HEM . . . G 3 11.182 -12.666 -35.474 1 14.41 ? CMD HEM 460 B 1 HETATM 34 C CAD HEM . . . G 3 9.992 -15.493 -34.698 1 21.95 ? CAD HEM 460 B 1 HETATM 35 C CBD HEM . . . G 3 8.471 -15.42 -34.922 1 32.97 ? CBD HEM 460 B 1 HETATM 36 C CGD HEM . . . G 3 7.698 -15.811 -33.674 1 31.61 ? CGD HEM 460 B 1 HETATM 37 O O1D HEM . . . G 3 8.269 -16.136 -32.659 1 37.28 ? O1D HEM 460 B 1 HETATM 38 O O2D HEM . . . G 3 6.359 -15.795 -33.696 1 37.67 ? O2D HEM 460 B 1 HETATM 39 N NA HEM . . . G 3 11.72 -17.821 -39.225 1 26.22 ? NA HEM 460 B 1 HETATM 40 N NB HEM . . . G 3 13.369 -16.987 -41.235 1 29.61 ? NB HEM 460 B 1 HETATM 41 N NC HEM . . . G 3 13.256 -14.391 -40.184 1 27.95 ? NC HEM 460 B 1 HETATM 42 N ND HEM . . . G 3 11.786 -15.389 -38.039 1 25.76 ? ND HEM 460 B 1 HETATM 43 FE FE HEM . . . G 3 12.592 -16.107 -39.667 1 30.25 ? FE HEM 460 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #