data_2Z3D # _model_server_result.job_id wOGoIJXxlBN-4Elv5qGstQ _model_server_result.datetime_utc '2025-01-10 18:36:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 2Z3D # _exptl.entry_id 2Z3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.17 _cell.angle_gamma 90 _cell.entry_id 2Z3D _cell.length_a 108.226 _cell.length_b 81.836 _cell.length_c 53.425 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 B C OCQ 5 I OCQ 905 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.758 ? covale ? covale2 A SG CYS 145 A CYS 145 1_555 B C ECQ 5 I ECQ 905 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.825 ? covale ? covale3 A SG CYS 145 A CYS 145 1_555 B CMK ECQ 5 I ECQ 905 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.973 ? covale ? covale4 B C ACE 1 I ACE 901 1_555 B N LEU 2 I LEU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 B C ALA 4 I ALA 904 1_555 B N OCQ 5 I OCQ 905 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.366 ? covale ? covale6 B C ALA 4 I ALA 904 1_555 B N ECQ 5 I ECQ 905 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.457 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 163 n n C1 C2 GOL sing 164 n n C1 H11 GOL sing 165 n n C1 H12 GOL sing 166 n n O1 HO1 GOL sing 167 n n C2 O2 GOL sing 168 n n C2 C3 GOL sing 169 n n C2 H2 GOL sing 170 n n O2 HO2 GOL sing 171 n n C3 O3 GOL sing 172 n n C3 H31 GOL sing 173 n n C3 H32 GOL sing 174 n n O3 HO3 GOL sing 175 n n # _atom_sites.entry_id 2Z3D _atom_sites.fract_transf_matrix[1][1] 0.00924 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002333 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 801 801 GOL GOL . D 4 HOH A 1 802 802 HOH HOH . D 4 HOH A 2 803 803 HOH HOH . D 4 HOH A 3 804 804 HOH HOH . D 4 HOH A 4 805 805 HOH HOH . D 4 HOH A 5 806 806 HOH HOH . D 4 HOH A 6 807 807 HOH HOH . D 4 HOH A 7 808 808 HOH HOH . D 4 HOH A 8 809 809 HOH HOH . D 4 HOH A 9 810 810 HOH HOH . D 4 HOH A 10 811 811 HOH HOH . D 4 HOH A 11 812 812 HOH HOH . D 4 HOH A 12 813 813 HOH HOH . D 4 HOH A 13 814 814 HOH HOH . D 4 HOH A 14 815 815 HOH HOH . D 4 HOH A 15 816 816 HOH HOH . D 4 HOH A 16 817 817 HOH HOH . D 4 HOH A 17 818 818 HOH HOH . D 4 HOH A 18 819 819 HOH HOH . D 4 HOH A 19 820 820 HOH HOH . D 4 HOH A 20 821 821 HOH HOH . D 4 HOH A 21 822 822 HOH HOH . D 4 HOH A 22 823 823 HOH HOH . D 4 HOH A 23 824 824 HOH HOH . D 4 HOH A 24 825 825 HOH HOH . D 4 HOH A 25 826 826 HOH HOH . D 4 HOH A 26 827 827 HOH HOH . D 4 HOH A 27 828 828 HOH HOH . D 4 HOH A 28 829 829 HOH HOH . D 4 HOH A 29 830 830 HOH HOH . D 4 HOH A 30 831 831 HOH HOH . D 4 HOH A 31 832 832 HOH HOH . D 4 HOH A 32 833 833 HOH HOH . D 4 HOH A 33 834 834 HOH HOH . D 4 HOH A 34 835 835 HOH HOH . D 4 HOH A 35 836 836 HOH HOH . D 4 HOH A 36 837 837 HOH HOH . D 4 HOH A 37 838 838 HOH HOH . D 4 HOH A 38 839 839 HOH HOH . D 4 HOH A 39 840 840 HOH HOH . D 4 HOH A 40 841 841 HOH HOH . D 4 HOH A 41 842 842 HOH HOH . D 4 HOH A 42 843 843 HOH HOH . D 4 HOH A 43 844 844 HOH HOH . D 4 HOH A 44 845 845 HOH HOH . D 4 HOH A 45 846 846 HOH HOH . D 4 HOH A 46 847 847 HOH HOH . D 4 HOH A 47 848 848 HOH HOH . D 4 HOH A 48 849 849 HOH HOH . D 4 HOH A 49 850 850 HOH HOH . D 4 HOH A 50 851 851 HOH HOH . D 4 HOH A 51 852 852 HOH HOH . D 4 HOH A 52 853 853 HOH HOH . D 4 HOH A 53 854 854 HOH HOH . D 4 HOH A 54 855 855 HOH HOH . D 4 HOH A 55 856 856 HOH HOH . D 4 HOH A 56 857 857 HOH HOH . D 4 HOH A 57 858 858 HOH HOH . D 4 HOH A 58 859 859 HOH HOH . D 4 HOH A 59 860 860 HOH HOH . D 4 HOH A 60 861 861 HOH HOH . D 4 HOH A 61 862 862 HOH HOH . D 4 HOH A 62 863 863 HOH HOH . D 4 HOH A 63 864 864 HOH HOH . D 4 HOH A 64 865 865 HOH HOH . D 4 HOH A 65 866 866 HOH HOH . D 4 HOH A 66 867 867 HOH HOH . D 4 HOH A 67 868 868 HOH HOH . D 4 HOH A 68 869 869 HOH HOH . D 4 HOH A 69 870 870 HOH HOH . D 4 HOH A 70 871 871 HOH HOH . D 4 HOH A 71 872 872 HOH HOH . D 4 HOH A 72 873 873 HOH HOH . D 4 HOH A 73 874 874 HOH HOH . D 4 HOH A 74 875 875 HOH HOH . D 4 HOH A 75 876 876 HOH HOH . D 4 HOH A 76 877 877 HOH HOH . D 4 HOH A 77 878 878 HOH HOH . D 4 HOH A 78 879 879 HOH HOH . D 4 HOH A 79 880 880 HOH HOH . D 4 HOH A 80 881 881 HOH HOH . D 4 HOH A 81 882 882 HOH HOH . D 4 HOH A 82 883 883 HOH HOH . D 4 HOH A 83 884 884 HOH HOH . D 4 HOH A 84 885 885 HOH HOH . D 4 HOH A 85 886 886 HOH HOH . D 4 HOH A 86 887 887 HOH HOH . D 4 HOH A 87 888 888 HOH HOH . D 4 HOH A 88 889 889 HOH HOH . D 4 HOH A 89 890 890 HOH HOH . D 4 HOH A 90 891 891 HOH HOH . D 4 HOH A 91 892 892 HOH HOH . D 4 HOH A 92 893 893 HOH HOH . D 4 HOH A 93 894 894 HOH HOH . D 4 HOH A 94 895 895 HOH HOH . D 4 HOH A 95 896 896 HOH HOH . D 4 HOH A 96 897 897 HOH HOH . D 4 HOH A 97 898 898 HOH HOH . D 4 HOH A 98 899 899 HOH HOH . D 4 HOH A 99 900 900 HOH HOH . D 4 HOH A 100 901 901 HOH HOH . D 4 HOH A 101 902 902 HOH HOH . D 4 HOH A 102 903 903 HOH HOH . D 4 HOH A 103 904 904 HOH HOH . D 4 HOH A 104 905 905 HOH HOH . D 4 HOH A 105 906 906 HOH HOH . D 4 HOH A 106 907 907 HOH HOH . D 4 HOH A 107 908 908 HOH HOH . D 4 HOH A 108 909 909 HOH HOH . D 4 HOH A 109 910 910 HOH HOH . D 4 HOH A 110 911 911 HOH HOH . D 4 HOH A 111 912 912 HOH HOH . D 4 HOH A 112 913 913 HOH HOH . D 4 HOH A 113 914 914 HOH HOH . D 4 HOH A 114 915 915 HOH HOH . D 4 HOH A 115 916 916 HOH HOH . D 4 HOH A 116 917 917 HOH HOH . D 4 HOH A 117 918 918 HOH HOH . D 4 HOH A 118 919 919 HOH HOH . D 4 HOH A 119 920 920 HOH HOH . D 4 HOH A 120 921 921 HOH HOH . D 4 HOH A 121 922 922 HOH HOH . D 4 HOH A 122 923 923 HOH HOH . D 4 HOH A 123 924 924 HOH HOH . D 4 HOH A 124 925 925 HOH HOH . D 4 HOH A 125 926 926 HOH HOH . D 4 HOH A 126 927 927 HOH HOH . D 4 HOH A 127 928 928 HOH HOH . D 4 HOH A 128 929 929 HOH HOH . D 4 HOH A 129 930 930 HOH HOH . D 4 HOH A 130 931 931 HOH HOH . D 4 HOH A 131 932 932 HOH HOH . D 4 HOH A 132 933 933 HOH HOH . D 4 HOH A 133 934 934 HOH HOH . D 4 HOH A 134 935 935 HOH HOH . D 4 HOH A 135 936 936 HOH HOH . D 4 HOH A 136 937 937 HOH HOH . D 4 HOH A 137 938 938 HOH HOH . D 4 HOH A 138 939 939 HOH HOH . D 4 HOH A 139 940 940 HOH HOH . D 4 HOH A 140 941 941 HOH HOH . D 4 HOH A 141 942 942 HOH HOH . D 4 HOH A 142 943 943 HOH HOH . D 4 HOH A 143 944 944 HOH HOH . D 4 HOH A 144 945 945 HOH HOH . D 4 HOH A 145 946 946 HOH HOH . D 4 HOH A 146 947 947 HOH HOH . D 4 HOH A 147 948 948 HOH HOH . D 4 HOH A 148 949 949 HOH HOH . D 4 HOH A 149 950 950 HOH HOH . D 4 HOH A 150 951 951 HOH HOH . D 4 HOH A 151 952 952 HOH HOH . D 4 HOH A 152 953 953 HOH HOH . D 4 HOH A 153 954 954 HOH HOH . D 4 HOH A 154 955 955 HOH HOH . D 4 HOH A 155 956 956 HOH HOH . D 4 HOH A 156 957 957 HOH HOH . D 4 HOH A 157 958 958 HOH HOH . D 4 HOH A 158 959 959 HOH HOH . D 4 HOH A 159 960 960 HOH HOH . D 4 HOH A 160 961 961 HOH HOH . D 4 HOH A 161 962 962 HOH HOH . D 4 HOH A 162 963 963 HOH HOH . D 4 HOH A 163 964 964 HOH HOH . D 4 HOH A 164 965 965 HOH HOH . D 4 HOH A 165 966 966 HOH HOH . D 4 HOH A 166 967 967 HOH HOH . D 4 HOH A 167 968 968 HOH HOH . D 4 HOH A 168 969 969 HOH HOH . D 4 HOH A 169 970 970 HOH HOH . D 4 HOH A 170 971 971 HOH HOH . D 4 HOH A 171 972 972 HOH HOH . D 4 HOH A 172 973 973 HOH HOH . D 4 HOH A 173 974 974 HOH HOH . D 4 HOH A 174 975 975 HOH HOH . D 4 HOH A 175 976 976 HOH HOH . D 4 HOH A 176 977 977 HOH HOH . D 4 HOH A 177 978 978 HOH HOH . D 4 HOH A 178 979 979 HOH HOH . D 4 HOH A 179 980 980 HOH HOH . D 4 HOH A 180 981 981 HOH HOH . D 4 HOH A 181 982 982 HOH HOH . D 4 HOH A 182 983 983 HOH HOH . D 4 HOH A 183 984 984 HOH HOH . D 4 HOH A 184 985 985 HOH HOH . D 4 HOH A 185 986 986 HOH HOH . D 4 HOH A 186 987 987 HOH HOH . D 4 HOH A 187 988 988 HOH HOH . D 4 HOH A 188 989 989 HOH HOH . D 4 HOH A 189 990 990 HOH HOH . D 4 HOH A 190 991 991 HOH HOH . D 4 HOH A 191 992 992 HOH HOH . D 4 HOH A 192 993 993 HOH HOH . D 4 HOH A 193 994 994 HOH HOH . D 4 HOH A 194 995 995 HOH HOH . D 4 HOH A 195 996 996 HOH HOH . D 4 HOH A 196 997 997 HOH HOH . D 4 HOH A 197 998 998 HOH HOH . D 4 HOH A 198 999 999 HOH HOH . D 4 HOH A 199 1000 1000 HOH HOH . D 4 HOH A 200 1001 1001 HOH HOH . D 4 HOH A 201 1002 1002 HOH HOH . D 4 HOH A 202 1003 1003 HOH HOH . D 4 HOH A 203 1004 1004 HOH HOH . D 4 HOH A 204 1005 1005 HOH HOH . D 4 HOH A 205 1006 1006 HOH HOH . D 4 HOH A 206 1007 1007 HOH HOH . D 4 HOH A 207 1008 1008 HOH HOH . D 4 HOH A 208 1009 1009 HOH HOH . D 4 HOH A 209 1010 1010 HOH HOH . D 4 HOH A 210 1011 1011 HOH HOH . D 4 HOH A 211 1012 1012 HOH HOH . E 4 HOH I 1 166 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -0.335 -38.726 -0.971 0.5 27.47 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . C 3 0.723 -38.533 -1.887 0.5 26.57 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . C 3 0.199 -39.02 0.427 0.5 28.29 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . C 3 -0.002 -40.383 0.729 0.5 26.7 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . C 3 -0.478 -38.191 1.516 0.5 28.88 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . C 3 -1.688 -37.597 1.091 0.5 31.25 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #