data_2Z3E # _model_server_result.job_id hMbzzonYMexk6x2p4YL9aQ _model_server_result.datetime_utc '2025-01-11 07:08:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 2Z3E # _exptl.entry_id 2Z3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.45 _cell.angle_gamma 90 _cell.entry_id 2Z3E _cell.length_a 108.264 _cell.length_b 82.235 _cell.length_c 53.487 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 B CMK KCQ 5 I KCQ 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale2 B C ACE 1 I ACE 1 1_555 B N VAL 2 I VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C VAL 2 I VAL 2 1_555 B N Z3E 3 I Z3E 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale4 B C Z3E 3 I Z3E 3 1_555 B N LEU 4 I LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 2Z3E _atom_sites.fract_transf_matrix[1][1] 0.009237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00238 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 801 801 GOL GOL . D 3 GOL A 1 802 802 GOL GOL . E 4 HOH A 1 803 803 HOH HOH . E 4 HOH A 2 804 804 HOH HOH . E 4 HOH A 3 805 805 HOH HOH . E 4 HOH A 4 806 806 HOH HOH . E 4 HOH A 5 807 807 HOH HOH . E 4 HOH A 6 808 808 HOH HOH . E 4 HOH A 7 809 809 HOH HOH . E 4 HOH A 8 810 810 HOH HOH . E 4 HOH A 9 811 811 HOH HOH . E 4 HOH A 10 812 812 HOH HOH . E 4 HOH A 11 813 813 HOH HOH . E 4 HOH A 12 814 814 HOH HOH . E 4 HOH A 13 815 815 HOH HOH . E 4 HOH A 14 816 816 HOH HOH . E 4 HOH A 15 817 817 HOH HOH . E 4 HOH A 16 818 818 HOH HOH . E 4 HOH A 17 819 819 HOH HOH . E 4 HOH A 18 820 820 HOH HOH . E 4 HOH A 19 821 821 HOH HOH . E 4 HOH A 20 822 822 HOH HOH . E 4 HOH A 21 823 823 HOH HOH . E 4 HOH A 22 824 824 HOH HOH . E 4 HOH A 23 825 825 HOH HOH . E 4 HOH A 24 826 826 HOH HOH . E 4 HOH A 25 827 827 HOH HOH . E 4 HOH A 26 828 828 HOH HOH . E 4 HOH A 27 829 829 HOH HOH . E 4 HOH A 28 830 830 HOH HOH . E 4 HOH A 29 831 831 HOH HOH . E 4 HOH A 30 832 832 HOH HOH . E 4 HOH A 31 833 833 HOH HOH . E 4 HOH A 32 834 834 HOH HOH . E 4 HOH A 33 835 835 HOH HOH . E 4 HOH A 34 836 836 HOH HOH . E 4 HOH A 35 837 837 HOH HOH . E 4 HOH A 36 838 838 HOH HOH . E 4 HOH A 37 839 839 HOH HOH . E 4 HOH A 38 840 840 HOH HOH . E 4 HOH A 39 841 841 HOH HOH . E 4 HOH A 40 842 842 HOH HOH . E 4 HOH A 41 843 843 HOH HOH . E 4 HOH A 42 844 844 HOH HOH . E 4 HOH A 43 845 845 HOH HOH . E 4 HOH A 44 846 846 HOH HOH . E 4 HOH A 45 847 847 HOH HOH . E 4 HOH A 46 848 848 HOH HOH . E 4 HOH A 47 849 849 HOH HOH . E 4 HOH A 48 850 850 HOH HOH . E 4 HOH A 49 851 851 HOH HOH . E 4 HOH A 50 852 852 HOH HOH . E 4 HOH A 51 853 853 HOH HOH . E 4 HOH A 52 854 854 HOH HOH . E 4 HOH A 53 855 855 HOH HOH . E 4 HOH A 54 856 856 HOH HOH . E 4 HOH A 55 857 857 HOH HOH . E 4 HOH A 56 858 858 HOH HOH . E 4 HOH A 57 859 859 HOH HOH . E 4 HOH A 58 860 860 HOH HOH . E 4 HOH A 59 861 861 HOH HOH . E 4 HOH A 60 862 862 HOH HOH . E 4 HOH A 61 863 863 HOH HOH . E 4 HOH A 62 864 864 HOH HOH . E 4 HOH A 63 865 865 HOH HOH . E 4 HOH A 64 866 866 HOH HOH . E 4 HOH A 65 867 867 HOH HOH . E 4 HOH A 66 868 868 HOH HOH . E 4 HOH A 67 869 869 HOH HOH . E 4 HOH A 68 870 870 HOH HOH . E 4 HOH A 69 871 871 HOH HOH . E 4 HOH A 70 872 872 HOH HOH . E 4 HOH A 71 873 873 HOH HOH . E 4 HOH A 72 874 874 HOH HOH . E 4 HOH A 73 875 875 HOH HOH . E 4 HOH A 74 876 876 HOH HOH . E 4 HOH A 75 877 877 HOH HOH . E 4 HOH A 76 878 878 HOH HOH . E 4 HOH A 77 879 879 HOH HOH . E 4 HOH A 78 880 880 HOH HOH . E 4 HOH A 79 881 881 HOH HOH . E 4 HOH A 80 882 882 HOH HOH . E 4 HOH A 81 883 883 HOH HOH . E 4 HOH A 82 884 884 HOH HOH . E 4 HOH A 83 885 885 HOH HOH . E 4 HOH A 84 886 886 HOH HOH . E 4 HOH A 85 887 887 HOH HOH . E 4 HOH A 86 888 888 HOH HOH . E 4 HOH A 87 889 889 HOH HOH . E 4 HOH A 88 890 890 HOH HOH . E 4 HOH A 89 891 891 HOH HOH . E 4 HOH A 90 892 892 HOH HOH . E 4 HOH A 91 893 893 HOH HOH . E 4 HOH A 92 894 894 HOH HOH . E 4 HOH A 93 895 895 HOH HOH . E 4 HOH A 94 896 896 HOH HOH . E 4 HOH A 95 897 897 HOH HOH . E 4 HOH A 96 898 898 HOH HOH . E 4 HOH A 97 899 899 HOH HOH . E 4 HOH A 98 900 900 HOH HOH . E 4 HOH A 99 901 901 HOH HOH . E 4 HOH A 100 902 902 HOH HOH . E 4 HOH A 101 903 903 HOH HOH . E 4 HOH A 102 904 904 HOH HOH . E 4 HOH A 103 905 905 HOH HOH . E 4 HOH A 104 906 906 HOH HOH . E 4 HOH A 105 907 907 HOH HOH . E 4 HOH A 106 908 908 HOH HOH . E 4 HOH A 107 909 909 HOH HOH . E 4 HOH A 108 910 910 HOH HOH . E 4 HOH A 109 911 911 HOH HOH . E 4 HOH A 110 912 912 HOH HOH . E 4 HOH A 111 913 913 HOH HOH . E 4 HOH A 112 914 914 HOH HOH . E 4 HOH A 113 915 915 HOH HOH . E 4 HOH A 114 916 916 HOH HOH . E 4 HOH A 115 917 917 HOH HOH . E 4 HOH A 116 918 918 HOH HOH . E 4 HOH A 117 919 919 HOH HOH . E 4 HOH A 118 920 920 HOH HOH . E 4 HOH A 119 921 921 HOH HOH . E 4 HOH A 120 922 922 HOH HOH . E 4 HOH A 121 923 923 HOH HOH . E 4 HOH A 122 924 924 HOH HOH . E 4 HOH A 123 925 925 HOH HOH . E 4 HOH A 124 926 926 HOH HOH . E 4 HOH A 125 927 927 HOH HOH . E 4 HOH A 126 928 928 HOH HOH . E 4 HOH A 127 929 929 HOH HOH . E 4 HOH A 128 930 930 HOH HOH . E 4 HOH A 129 931 931 HOH HOH . E 4 HOH A 130 932 932 HOH HOH . E 4 HOH A 131 933 933 HOH HOH . E 4 HOH A 132 934 934 HOH HOH . E 4 HOH A 133 935 935 HOH HOH . E 4 HOH A 134 936 936 HOH HOH . E 4 HOH A 135 937 937 HOH HOH . E 4 HOH A 136 938 938 HOH HOH . E 4 HOH A 137 939 939 HOH HOH . E 4 HOH A 138 940 940 HOH HOH . E 4 HOH A 139 941 941 HOH HOH . E 4 HOH A 140 942 942 HOH HOH . E 4 HOH A 141 943 943 HOH HOH . E 4 HOH A 142 944 944 HOH HOH . E 4 HOH A 143 945 945 HOH HOH . E 4 HOH A 144 946 946 HOH HOH . E 4 HOH A 145 947 947 HOH HOH . E 4 HOH A 146 948 948 HOH HOH . E 4 HOH A 147 949 949 HOH HOH . E 4 HOH A 148 950 950 HOH HOH . E 4 HOH A 149 951 951 HOH HOH . E 4 HOH A 150 952 952 HOH HOH . E 4 HOH A 151 953 953 HOH HOH . E 4 HOH A 152 954 954 HOH HOH . E 4 HOH A 153 955 955 HOH HOH . E 4 HOH A 154 956 956 HOH HOH . E 4 HOH A 155 957 957 HOH HOH . E 4 HOH A 156 958 958 HOH HOH . E 4 HOH A 157 959 959 HOH HOH . E 4 HOH A 158 960 960 HOH HOH . E 4 HOH A 159 961 961 HOH HOH . E 4 HOH A 160 962 962 HOH HOH . E 4 HOH A 161 963 963 HOH HOH . E 4 HOH A 162 964 964 HOH HOH . E 4 HOH A 163 965 965 HOH HOH . E 4 HOH A 164 966 966 HOH HOH . E 4 HOH A 165 967 967 HOH HOH . E 4 HOH A 166 968 968 HOH HOH . E 4 HOH A 167 969 969 HOH HOH . E 4 HOH A 168 970 970 HOH HOH . E 4 HOH A 169 971 971 HOH HOH . E 4 HOH A 170 972 972 HOH HOH . E 4 HOH A 171 973 973 HOH HOH . E 4 HOH A 172 974 974 HOH HOH . E 4 HOH A 173 975 975 HOH HOH . E 4 HOH A 174 976 976 HOH HOH . E 4 HOH A 175 977 977 HOH HOH . E 4 HOH A 176 978 978 HOH HOH . E 4 HOH A 177 979 979 HOH HOH . E 4 HOH A 178 980 980 HOH HOH . E 4 HOH A 179 981 981 HOH HOH . E 4 HOH A 180 982 982 HOH HOH . E 4 HOH A 181 983 983 HOH HOH . E 4 HOH A 182 984 984 HOH HOH . E 4 HOH A 183 985 985 HOH HOH . E 4 HOH A 184 986 986 HOH HOH . E 4 HOH A 185 987 987 HOH HOH . E 4 HOH A 186 988 988 HOH HOH . E 4 HOH A 187 989 989 HOH HOH . E 4 HOH A 188 990 990 HOH HOH . E 4 HOH A 189 991 991 HOH HOH . E 4 HOH A 190 992 992 HOH HOH . E 4 HOH A 191 993 993 HOH HOH . E 4 HOH A 192 994 994 HOH HOH . E 4 HOH A 193 995 995 HOH HOH . E 4 HOH A 194 996 996 HOH HOH . E 4 HOH A 195 997 997 HOH HOH . E 4 HOH A 196 998 998 HOH HOH . E 4 HOH A 197 999 999 HOH HOH . E 4 HOH A 198 1000 1000 HOH HOH . E 4 HOH A 199 1001 1001 HOH HOH . E 4 HOH A 200 1002 1002 HOH HOH . E 4 HOH A 201 1003 1003 HOH HOH . E 4 HOH A 202 1004 1004 HOH HOH . E 4 HOH A 203 1005 1005 HOH HOH . E 4 HOH A 204 1006 1006 HOH HOH . E 4 HOH A 205 1007 1007 HOH HOH . F 4 HOH I 1 922 922 HOH HOH . F 4 HOH I 2 1008 1008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 6.241 1.831 -26.957 0.5 19.04 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . C 3 7.423 1.598 -27.705 0.5 19.81 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . C 3 6.561 1.77 -25.465 0.5 18.32 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . C 3 6.814 0.399 -25.142 0.5 18.75 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . C 3 5.575 2.542 -24.53 0.5 17.06 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . C 3 4.895 3.709 -25.027 0.5 14.28 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #