data_2Z3K # _model_server_result.job_id aRSeRFSwnpNdxGxDUfEdHQ _model_server_result.datetime_utc '2024-11-23 19:19:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2Z3K # _exptl.entry_id 2Z3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D(-)-TARTARIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z3K _cell.length_a 115.106 _cell.length_b 129.846 _cell.length_c 38.691 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' XYA . A XYA 301 1_555 D C PHE . A PHE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 F O3' XYA . B XYA 401 1_555 G C PHE . B PHE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TAR _chem_comp.mon_nstd_flag . _chem_comp.name 'D(-)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TAR doub 290 n n O11 C1 TAR sing 291 n n O11 HO1 TAR sing 292 n n C1 C2 TAR sing 293 n n C2 O2 TAR sing 294 n n C2 C3 TAR sing 295 n n C2 H2 TAR sing 296 n n O2 HO2 TAR sing 297 n n C3 O3 TAR sing 298 n n C3 C4 TAR sing 299 n n C3 H3 TAR sing 300 n n O3 HO3 TAR sing 301 n n C4 O4 TAR doub 302 n n C4 O41 TAR sing 303 n n O41 HO4 TAR sing 304 n n # _atom_sites.entry_id 2Z3K _atom_sites.fract_transf_matrix[1][1] 0.008688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XYA A 1 301 301 XYA XYA . D 3 PHE A 1 302 302 PHE PHE . E 4 TAR A 1 501 501 TAR TAR . F 2 XYA B 1 401 401 XYA XYA . G 3 PHE B 1 402 402 PHE PHE . H 4 TAR B 1 502 502 TAR TAR . I 5 HOH A 1 1002 1002 HOH HOH . I 5 HOH A 2 1003 1003 HOH HOH . I 5 HOH A 3 1006 1006 HOH HOH . I 5 HOH A 4 1007 1007 HOH HOH . I 5 HOH A 5 1009 1009 HOH HOH . J 5 HOH B 1 1001 1001 HOH HOH . J 5 HOH B 2 1004 1004 HOH HOH . J 5 HOH B 3 1005 1005 HOH HOH . J 5 HOH B 4 1008 1008 HOH HOH . J 5 HOH B 5 1010 1010 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TAR . . . E 4 44.105 47.232 12.887 1 60.81 ? O1 TAR 501 A 1 HETATM 2 O O11 TAR . . . E 4 44.339 49.215 11.966 1 60.99 ? O11 TAR 501 A 1 HETATM 3 C C1 TAR . . . E 4 44.43 48.385 13.007 1 61.59 ? C1 TAR 501 A 1 HETATM 4 C C2 TAR . . . E 4 44.929 48.902 14.327 1 63.41 ? C2 TAR 501 A 1 HETATM 5 O O2 TAR . . . E 4 44.931 47.829 15.265 1 65.57 ? O2 TAR 501 A 1 HETATM 6 C C3 TAR . . . E 4 46.348 49.463 14.201 1 65.08 ? C3 TAR 501 A 1 HETATM 7 O O3 TAR . . . E 4 47.22 48.397 13.794 1 66.14 ? O3 TAR 501 A 1 HETATM 8 C C4 TAR . . . E 4 46.803 50.013 15.545 1 65.79 ? C4 TAR 501 A 1 HETATM 9 O O4 TAR . . . E 4 47.765 49.551 16.103 1 69.72 ? O4 TAR 501 A 1 HETATM 10 O O41 TAR . . . E 4 46.134 51.021 16.124 1 65.02 ? O41 TAR 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #