data_2Z3M # _model_server_result.job_id IwMNbSg7YptiWHvF_t6jYg _model_server_result.datetime_utc '2024-11-23 18:38:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 2Z3M # _exptl.entry_id 2Z3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.189 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENYLALANINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z3M _cell.length_a 116.681 _cell.length_b 127.682 _cell.length_c 38.354 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' 3D1 . A 3D1 301 1_555 D C PHE . A PHE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale2 F O3' 3D1 . B 3D1 401 1_555 G C PHE . B PHE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? # _chem_comp.formula 'C9 H11 N O2' _chem_comp.formula_weight 165.189 _chem_comp.id PHE _chem_comp.mon_nstd_flag y _chem_comp.name PHENYLALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PHE sing 270 n n N H PHE sing 271 n n N H2 PHE sing 272 n n CA C PHE sing 273 n n CA CB PHE sing 274 n n CA HA PHE sing 275 n n C O PHE doub 276 n n C OXT PHE sing 277 n n CB CG PHE sing 278 n n CB HB2 PHE sing 279 n n CB HB3 PHE sing 280 n n CG CD1 PHE doub 281 n y CG CD2 PHE sing 282 n y CD1 CE1 PHE sing 283 n y CD1 HD1 PHE sing 284 n n CD2 CE2 PHE doub 285 n y CD2 HD2 PHE sing 286 n n CE1 CZ PHE doub 287 n y CE1 HE1 PHE sing 288 n n CE2 CZ PHE sing 289 n y CE2 HE2 PHE sing 290 n n CZ HZ PHE sing 291 n n OXT HXT PHE sing 292 n n # _atom_sites.entry_id 2Z3M _atom_sites.fract_transf_matrix[1][1] 0.00857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3D1 A 1 301 301 3D1 ADE . D 3 PHE A 1 302 302 PHE PHE . E 4 TAR A 1 501 501 TAR TAR . F 2 3D1 B 1 401 401 3D1 ADE . G 3 PHE B 1 402 402 PHE PHE . H 4 TAR B 1 502 502 TAR TAR . I 5 HOH A 1 502 1002 HOH HOH . I 5 HOH A 2 503 1003 HOH HOH . I 5 HOH A 3 504 1008 HOH HOH . I 5 HOH A 4 505 1010 HOH HOH . I 5 HOH A 5 506 1011 HOH HOH . I 5 HOH A 6 507 1015 HOH HOH . I 5 HOH A 7 508 1016 HOH HOH . I 5 HOH A 8 509 1021 HOH HOH . I 5 HOH A 9 510 1023 HOH HOH . I 5 HOH A 10 511 1024 HOH HOH . I 5 HOH A 11 512 1025 HOH HOH . I 5 HOH A 12 513 1026 HOH HOH . I 5 HOH A 13 514 1027 HOH HOH . I 5 HOH A 14 515 1029 HOH HOH . I 5 HOH A 15 516 1030 HOH HOH . I 5 HOH A 16 517 1031 HOH HOH . J 5 HOH B 1 503 1001 HOH HOH . J 5 HOH B 2 504 1004 HOH HOH . J 5 HOH B 3 505 1005 HOH HOH . J 5 HOH B 4 506 1006 HOH HOH . J 5 HOH B 5 507 1007 HOH HOH . J 5 HOH B 6 508 1009 HOH HOH . J 5 HOH B 7 509 1012 HOH HOH . J 5 HOH B 8 510 1013 HOH HOH . J 5 HOH B 9 511 1014 HOH HOH . J 5 HOH B 10 512 1017 HOH HOH . J 5 HOH B 11 513 1018 HOH HOH . J 5 HOH B 12 514 1019 HOH HOH . J 5 HOH B 13 515 1020 HOH HOH . J 5 HOH B 14 516 1022 HOH HOH . J 5 HOH B 15 517 1028 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PHE . . . D 3 35.046 56.673 8.952 1 72.04 ? N PHE 302 A 1 HETATM 2 C CA PHE . . . D 3 35.44 55.281 9.118 1 72.86 ? CA PHE 302 A 1 HETATM 3 C C PHE . . . D 3 36.845 55.212 9.699 1 75.12 ? C PHE 302 A 1 HETATM 4 O O PHE . . . D 3 37.842 55.456 9.017 1 48.5 ? O PHE 302 A 1 HETATM 5 C CB PHE . . . D 3 35.393 54.557 7.773 1 70.64 ? CB PHE 302 A 1 HETATM 6 C CG PHE . . . D 3 35.525 53.064 7.877 1 68.65 ? CG PHE 302 A 1 HETATM 7 C CD1 PHE . . . D 3 34.861 52.361 8.875 1 69.12 ? CD1 PHE 302 A 1 HETATM 8 C CD2 PHE . . . D 3 36.267 52.357 6.94 1 68.11 ? CD2 PHE 302 A 1 HETATM 9 C CE1 PHE . . . D 3 34.929 50.975 8.937 1 69.5 ? CE1 PHE 302 A 1 HETATM 10 C CE2 PHE . . . D 3 36.342 50.973 6.99 1 68.01 ? CE2 PHE 302 A 1 HETATM 11 C CZ PHE . . . D 3 35.67 50.278 7.992 1 69.62 ? CZ PHE 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #