data_2Z3U # _model_server_result.job_id ARzCajJCo5L27OaY0OlkxA _model_server_result.datetime_utc '2024-10-19 11:47:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 2Z3U # _exptl.entry_id 2Z3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.372 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3,4-DI-1H-INDOL-3-YL-1H-PYRROLE-2,5-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z3U _cell.length_a 44.627 _cell.length_b 66.61 _cell.length_c 136.813 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 364 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 364 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 500 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.402 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H15 N3 O4' _chem_comp.formula_weight 385.372 _chem_comp.id CRR _chem_comp.mon_nstd_flag . _chem_comp.name '3,4-DI-1H-INDOL-3-YL-1H-PYRROLE-2,5-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CHROMOPYRROLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C20 CRR doub 70 n y C5 C4 CRR sing 71 n y C5 C6 CRR sing 72 n y C4 C3 CRR doub 73 n y C4 H4 CRR sing 74 n n C3 C2 CRR sing 75 n y C3 H3 CRR sing 76 n n C2 C1 CRR doub 77 n y C2 H2 CRR sing 78 n n C1 C20 CRR sing 79 n y C1 H1 CRR sing 80 n n C20 N3 CRR sing 81 n y N3 C19 CRR sing 82 n y N3 HN3 CRR sing 83 n n C19 C6 CRR doub 84 n y C19 H19 CRR sing 85 n n C6 C7 CRR sing 86 n y C7 C8 CRR doub 87 n y C7 C10 CRR sing 88 n y C8 C36 CRR sing 89 n n C8 N1 CRR sing 90 n y C36 O39 CRR doub 91 n n C36 O40 CRR sing 92 n n O40 HO40 CRR sing 93 n n N1 C9 CRR sing 94 n y N1 HN1 CRR sing 95 n n C9 C10 CRR doub 96 n y C9 C35 CRR sing 97 n n C35 O37 CRR doub 98 n n C35 O38 CRR sing 99 n n O38 HO38 CRR sing 100 n n C10 C11 CRR sing 101 n y C11 C12 CRR sing 102 n y C11 C18 CRR doub 103 n y C12 C13 CRR doub 104 n y C12 C17 CRR sing 105 n y C13 C14 CRR sing 106 n y C13 H13 CRR sing 107 n n C14 C15 CRR doub 108 n y C14 H14 CRR sing 109 n n C15 C16 CRR sing 110 n y C15 H15 CRR sing 111 n n C16 C17 CRR doub 112 n y C16 H16 CRR sing 113 n n C17 N2 CRR sing 114 n y N2 C18 CRR sing 115 n y N2 HN2 CRR sing 116 n n C18 H18 CRR sing 117 n n # _atom_sites.entry_id 2Z3U _atom_sites.fract_transf_matrix[1][1] 0.022408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 500 500 HEM HEM . C 3 CRR A 1 501 501 CRR CPA . D 3 CRR A 1 502 502 CRR CPA . E 3 CRR A 1 503 503 CRR CPA . F 4 EDO A 1 504 504 EDO EDO . G 4 EDO A 1 505 505 EDO EDO . H 4 EDO A 1 506 506 EDO EDO . I 4 EDO A 1 507 507 EDO EDO . J 5 HOH A 1 601 601 HOH HOH . J 5 HOH A 2 602 602 HOH HOH . J 5 HOH A 3 603 603 HOH HOH . J 5 HOH A 4 604 604 HOH HOH . J 5 HOH A 5 605 605 HOH HOH . J 5 HOH A 6 606 606 HOH HOH . J 5 HOH A 7 607 607 HOH HOH . J 5 HOH A 8 608 608 HOH HOH . J 5 HOH A 9 609 609 HOH HOH . J 5 HOH A 10 610 610 HOH HOH . J 5 HOH A 11 611 611 HOH HOH . J 5 HOH A 12 612 612 HOH HOH . J 5 HOH A 13 613 613 HOH HOH . J 5 HOH A 14 614 614 HOH HOH . J 5 HOH A 15 615 615 HOH HOH . J 5 HOH A 16 616 616 HOH HOH . J 5 HOH A 17 617 617 HOH HOH . J 5 HOH A 18 618 618 HOH HOH . J 5 HOH A 19 619 619 HOH HOH . J 5 HOH A 20 620 620 HOH HOH . J 5 HOH A 21 621 621 HOH HOH . J 5 HOH A 22 622 622 HOH HOH . J 5 HOH A 23 623 623 HOH HOH . J 5 HOH A 24 624 624 HOH HOH . J 5 HOH A 25 625 625 HOH HOH . J 5 HOH A 26 626 626 HOH HOH . J 5 HOH A 27 627 627 HOH HOH . J 5 HOH A 28 628 628 HOH HOH . J 5 HOH A 29 629 629 HOH HOH . J 5 HOH A 30 630 630 HOH HOH . J 5 HOH A 31 631 631 HOH HOH . J 5 HOH A 32 632 632 HOH HOH . J 5 HOH A 33 633 633 HOH HOH . J 5 HOH A 34 634 634 HOH HOH . J 5 HOH A 35 635 635 HOH HOH . J 5 HOH A 36 636 636 HOH HOH . J 5 HOH A 37 637 637 HOH HOH . J 5 HOH A 38 638 638 HOH HOH . J 5 HOH A 39 639 639 HOH HOH . J 5 HOH A 40 640 640 HOH HOH . J 5 HOH A 41 641 641 HOH HOH . J 5 HOH A 42 642 642 HOH HOH . J 5 HOH A 43 643 643 HOH HOH . J 5 HOH A 44 644 644 HOH HOH . J 5 HOH A 45 645 645 HOH HOH . J 5 HOH A 46 646 646 HOH HOH . J 5 HOH A 47 647 647 HOH HOH . J 5 HOH A 48 648 648 HOH HOH . J 5 HOH A 49 649 649 HOH HOH . J 5 HOH A 50 650 650 HOH HOH . J 5 HOH A 51 651 651 HOH HOH . J 5 HOH A 52 652 652 HOH HOH . J 5 HOH A 53 653 653 HOH HOH . J 5 HOH A 54 654 654 HOH HOH . J 5 HOH A 55 655 655 HOH HOH . J 5 HOH A 56 656 656 HOH HOH . J 5 HOH A 57 657 657 HOH HOH . J 5 HOH A 58 658 658 HOH HOH . J 5 HOH A 59 659 659 HOH HOH . J 5 HOH A 60 660 660 HOH HOH . J 5 HOH A 61 661 661 HOH HOH . J 5 HOH A 62 662 662 HOH HOH . J 5 HOH A 63 663 663 HOH HOH . J 5 HOH A 64 664 664 HOH HOH . J 5 HOH A 65 665 665 HOH HOH . J 5 HOH A 66 666 666 HOH HOH . J 5 HOH A 67 667 667 HOH HOH . J 5 HOH A 68 668 668 HOH HOH . J 5 HOH A 69 669 669 HOH HOH . J 5 HOH A 70 670 670 HOH HOH . J 5 HOH A 71 671 671 HOH HOH . J 5 HOH A 72 672 672 HOH HOH . J 5 HOH A 73 673 673 HOH HOH . J 5 HOH A 74 674 674 HOH HOH . J 5 HOH A 75 675 675 HOH HOH . J 5 HOH A 76 676 676 HOH HOH . J 5 HOH A 77 677 677 HOH HOH . J 5 HOH A 78 678 678 HOH HOH . J 5 HOH A 79 679 679 HOH HOH . J 5 HOH A 80 680 680 HOH HOH . J 5 HOH A 81 681 681 HOH HOH . J 5 HOH A 82 682 682 HOH HOH . J 5 HOH A 83 683 683 HOH HOH . J 5 HOH A 84 684 684 HOH HOH . J 5 HOH A 85 685 685 HOH HOH . J 5 HOH A 86 686 686 HOH HOH . J 5 HOH A 87 687 687 HOH HOH . J 5 HOH A 88 688 688 HOH HOH . J 5 HOH A 89 689 689 HOH HOH . J 5 HOH A 90 690 690 HOH HOH . J 5 HOH A 91 691 691 HOH HOH . J 5 HOH A 92 692 692 HOH HOH . J 5 HOH A 93 693 693 HOH HOH . J 5 HOH A 94 694 694 HOH HOH . J 5 HOH A 95 695 695 HOH HOH . J 5 HOH A 96 696 696 HOH HOH . J 5 HOH A 97 697 697 HOH HOH . J 5 HOH A 98 698 698 HOH HOH . J 5 HOH A 99 699 699 HOH HOH . J 5 HOH A 100 700 700 HOH HOH . J 5 HOH A 101 701 701 HOH HOH . J 5 HOH A 102 702 702 HOH HOH . J 5 HOH A 103 703 703 HOH HOH . J 5 HOH A 104 704 704 HOH HOH . J 5 HOH A 105 705 705 HOH HOH . J 5 HOH A 106 706 706 HOH HOH . J 5 HOH A 107 707 707 HOH HOH . J 5 HOH A 108 708 708 HOH HOH . J 5 HOH A 109 709 709 HOH HOH . J 5 HOH A 110 710 710 HOH HOH . J 5 HOH A 111 711 711 HOH HOH . J 5 HOH A 112 712 712 HOH HOH . J 5 HOH A 113 713 713 HOH HOH . J 5 HOH A 114 714 714 HOH HOH . J 5 HOH A 115 715 715 HOH HOH . J 5 HOH A 116 716 716 HOH HOH . J 5 HOH A 117 717 717 HOH HOH . J 5 HOH A 118 718 718 HOH HOH . J 5 HOH A 119 719 719 HOH HOH . J 5 HOH A 120 720 720 HOH HOH . J 5 HOH A 121 721 721 HOH HOH . J 5 HOH A 122 722 722 HOH HOH . J 5 HOH A 123 723 723 HOH HOH . J 5 HOH A 124 724 724 HOH HOH . J 5 HOH A 125 725 725 HOH HOH . J 5 HOH A 126 726 726 HOH HOH . J 5 HOH A 127 727 727 HOH HOH . J 5 HOH A 128 728 728 HOH HOH . J 5 HOH A 129 729 729 HOH HOH . J 5 HOH A 130 730 730 HOH HOH . J 5 HOH A 131 731 731 HOH HOH . J 5 HOH A 132 732 732 HOH HOH . J 5 HOH A 133 733 733 HOH HOH . J 5 HOH A 134 734 734 HOH HOH . J 5 HOH A 135 735 735 HOH HOH . J 5 HOH A 136 736 736 HOH HOH . J 5 HOH A 137 737 737 HOH HOH . J 5 HOH A 138 738 738 HOH HOH . J 5 HOH A 139 739 739 HOH HOH . J 5 HOH A 140 740 740 HOH HOH . J 5 HOH A 141 741 741 HOH HOH . J 5 HOH A 142 742 742 HOH HOH . J 5 HOH A 143 743 743 HOH HOH . J 5 HOH A 144 744 744 HOH HOH . J 5 HOH A 145 745 745 HOH HOH . J 5 HOH A 146 746 746 HOH HOH . J 5 HOH A 147 747 747 HOH HOH . J 5 HOH A 148 748 748 HOH HOH . J 5 HOH A 149 749 749 HOH HOH . J 5 HOH A 150 750 750 HOH HOH . J 5 HOH A 151 751 751 HOH HOH . J 5 HOH A 152 752 752 HOH HOH . J 5 HOH A 153 753 753 HOH HOH . J 5 HOH A 154 754 754 HOH HOH . J 5 HOH A 155 755 755 HOH HOH . J 5 HOH A 156 756 756 HOH HOH . J 5 HOH A 157 757 757 HOH HOH . J 5 HOH A 158 758 758 HOH HOH . J 5 HOH A 159 759 759 HOH HOH . J 5 HOH A 160 760 760 HOH HOH . J 5 HOH A 161 761 761 HOH HOH . J 5 HOH A 162 762 762 HOH HOH . J 5 HOH A 163 763 763 HOH HOH . J 5 HOH A 164 764 764 HOH HOH . J 5 HOH A 165 765 765 HOH HOH . J 5 HOH A 166 766 766 HOH HOH . J 5 HOH A 167 767 767 HOH HOH . J 5 HOH A 168 768 768 HOH HOH . J 5 HOH A 169 769 769 HOH HOH . J 5 HOH A 170 770 770 HOH HOH . J 5 HOH A 171 771 771 HOH HOH . J 5 HOH A 172 772 772 HOH HOH . J 5 HOH A 173 773 773 HOH HOH . J 5 HOH A 174 774 774 HOH HOH . J 5 HOH A 175 775 775 HOH HOH . J 5 HOH A 176 776 776 HOH HOH . J 5 HOH A 177 777 777 HOH HOH . J 5 HOH A 178 778 778 HOH HOH . J 5 HOH A 179 779 779 HOH HOH . J 5 HOH A 180 780 780 HOH HOH . J 5 HOH A 181 781 781 HOH HOH . J 5 HOH A 182 782 782 HOH HOH . J 5 HOH A 183 783 783 HOH HOH . J 5 HOH A 184 784 784 HOH HOH . J 5 HOH A 185 785 785 HOH HOH . J 5 HOH A 186 786 786 HOH HOH . J 5 HOH A 187 787 787 HOH HOH . J 5 HOH A 188 788 788 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 CRR . . . D 3 -12.494 1.106 -38.802 0.75 31.89 ? C5 CRR 502 A 1 HETATM 2 C C4 CRR . . . D 3 -13.845 0.995 -39.113 0.75 30.84 ? C4 CRR 502 A 1 HETATM 3 C C3 CRR . . . D 3 -14.267 1.189 -40.423 0.75 31.45 ? C3 CRR 502 A 1 HETATM 4 C C2 CRR . . . D 3 -13.343 1.492 -41.418 0.75 30.55 ? C2 CRR 502 A 1 HETATM 5 C C1 CRR . . . D 3 -11.993 1.602 -41.103 0.75 31.3 ? C1 CRR 502 A 1 HETATM 6 C C20 CRR . . . D 3 -11.571 1.409 -39.794 0.75 32.44 ? C20 CRR 502 A 1 HETATM 7 N N3 CRR . . . D 3 -10.368 1.461 -39.223 0.75 33.07 ? N3 CRR 502 A 1 HETATM 8 C C19 CRR . . . D 3 -10.48 1.208 -37.922 0.75 32.48 ? C19 CRR 502 A 1 HETATM 9 C C6 CRR . . . D 3 -11.758 0.988 -37.63 0.75 33.96 ? C6 CRR 502 A 1 HETATM 10 C C7 CRR . . . D 3 -12.308 0.709 -36.382 0.75 34.07 ? C7 CRR 502 A 1 HETATM 11 C C8 CRR . . . D 3 -13.047 -0.402 -35.993 0.75 33.99 ? C8 CRR 502 A 1 HETATM 12 C C36 CRR . . . D 3 -13.497 -1.555 -36.893 0.75 31.22 ? C36 CRR 502 A 1 HETATM 13 O O39 CRR . . . D 3 -13.365 -1.442 -38.13 0.75 29.44 ? O39 CRR 502 A 1 HETATM 14 O O40 CRR . . . D 3 -13.976 -2.562 -36.326 0.75 28.07 ? O40 CRR 502 A 1 HETATM 15 N N1 CRR . . . D 3 -13.254 -0.368 -34.678 0.75 34.8 ? N1 CRR 502 A 1 HETATM 16 C C9 CRR . . . D 3 -12.671 0.724 -34.188 0.75 36.14 ? C9 CRR 502 A 1 HETATM 17 C C35 CRR . . . D 3 -12.747 1.15 -32.721 0.75 35.11 ? C35 CRR 502 A 1 HETATM 18 O O37 CRR . . . D 3 -11.942 2.014 -32.307 0.75 31.75 ? O37 CRR 502 A 1 HETATM 19 O O38 CRR . . . D 3 -13.609 0.593 -32.006 0.75 32.61 ? O38 CRR 502 A 1 HETATM 20 C C10 CRR . . . D 3 -12.055 1.427 -35.223 0.75 34.95 ? C10 CRR 502 A 1 HETATM 21 C C11 CRR . . . D 3 -11.335 2.61 -35.152 0.75 35.14 ? C11 CRR 502 A 1 HETATM 22 C C12 CRR . . . D 3 -11.672 3.74 -35.889 0.75 33.62 ? C12 CRR 502 A 1 HETATM 23 C C13 CRR . . . D 3 -12.716 4.044 -36.755 0.75 33.16 ? C13 CRR 502 A 1 HETATM 24 C C14 CRR . . . D 3 -12.772 5.299 -37.348 0.75 32.67 ? C14 CRR 502 A 1 HETATM 25 C C15 CRR . . . D 3 -11.786 6.242 -37.073 0.75 33.01 ? C15 CRR 502 A 1 HETATM 26 C C16 CRR . . . D 3 -10.745 5.933 -36.207 0.75 34.05 ? C16 CRR 502 A 1 HETATM 27 C C17 CRR . . . D 3 -10.689 4.677 -35.613 0.75 35.61 ? C17 CRR 502 A 1 HETATM 28 N N2 CRR . . . D 3 -9.834 4.121 -34.757 0.75 35.13 ? N2 CRR 502 A 1 HETATM 29 C C18 CRR . . . D 3 -10.222 2.879 -34.476 0.75 35.04 ? C18 CRR 502 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #