data_2Z4B
#
_model_server_result.job_id            ytB_qP3sPJRZTVbYs_zSsA 
_model_server_result.datetime_utc      '2024-12-26 13:32:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2z4b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":81}' 
#
_entry.id    2Z4B 
#
_exptl.entry_id    2Z4B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              318.315 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3AS,4R,9BR)-2,2-DIFLUORO-4-(4-HYDROXYPHENYL)-1,2,3,3A,4,9B-HEXAHYDROCYCLOPENTA[C]CHROMEN-8-OL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2Z4B 
_cell.length_a            63.523 
_cell.length_b            63.523 
_cell.length_c            250.837 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Z4B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C18 H16 F2 O3' 
_chem_comp.formula_weight    318.315 
_chem_comp.id                DC8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3AS,4R,9BR)-2,2-DIFLUORO-4-(4-HYDROXYPHENYL)-1,2,3,3A,4,9B-HEXAHYDROCYCLOPENTA[C]CHROMEN-8-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C3 DC8 sing 83 n y 
C4 O5 DC8 sing 84 n n 
C4 C17 DC8 doub 85 n y 
C6 O5 DC8 sing 86 n n 
C6 C19 DC8 sing 87 n n 
C6 C8 DC8 sing 88 n n 
C6 H6 DC8 sing 89 n n 
C8 C15 DC8 sing 90 n n 
C8 C10 DC8 sing 91 n n 
C8 H8 DC8 sing 92 n n 
C10 C11 DC8 sing 93 n n 
C10 H101 DC8 sing 94 n n 
C10 H102 DC8 sing 95 n n 
C15 C17 DC8 sing 96 n n 
C15 C14 DC8 sing 97 n n 
C15 H15 DC8 sing 98 n n 
C17 C18 DC8 sing 99 n y 
C20 C19 DC8 doub 100 n y 
C20 C21 DC8 sing 101 n y 
C20 H20 DC8 sing 102 n n 
C21 C22 DC8 doub 103 n y 
C21 H21 DC8 sing 104 n n 
C22 C24 DC8 sing 105 n y 
C22 O23 DC8 sing 106 n n 
C24 C25 DC8 doub 107 n y 
C24 H24 DC8 sing 108 n n 
C1 C2 DC8 sing 109 n y 
C1 O26 DC8 sing 110 n n 
C1 C18 DC8 doub 111 n y 
C2 C3 DC8 doub 112 n y 
C2 H2 DC8 sing 113 n n 
C3 H3 DC8 sing 114 n n 
C11 C14 DC8 sing 115 n n 
C11 F13 DC8 sing 116 n n 
C11 F12 DC8 sing 117 n n 
C14 H141 DC8 sing 118 n n 
C14 H142 DC8 sing 119 n n 
C18 H18 DC8 sing 120 n n 
C19 C25 DC8 sing 121 n y 
O23 HO23 DC8 sing 122 n n 
C25 H25 DC8 sing 123 n n 
O26 HO26 DC8 sing 124 n n 
#
_atom_sites.entry_id                     2Z4B 
_atom_sites.fract_transf_matrix[1][1]    0.015742 
_atom_sites.fract_transf_matrix[1][2]    0.009089 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018178 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003987 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DC8 A 1 80 1 DC8 LIG . 
D 2 DC8 B 1 81 1 DC8 LIG . 
E 3 HOH A 1 2 2 HOH TIP . 
E 3 HOH A 2 3 3 HOH TIP . 
E 3 HOH A 3 5 5 HOH TIP . 
E 3 HOH A 4 6 6 HOH TIP . 
E 3 HOH A 5 7 7 HOH TIP . 
E 3 HOH A 6 9 9 HOH TIP . 
E 3 HOH A 7 10 10 HOH TIP . 
E 3 HOH A 8 16 16 HOH TIP . 
E 3 HOH A 9 18 18 HOH TIP . 
E 3 HOH A 10 21 21 HOH TIP . 
E 3 HOH A 11 22 22 HOH TIP . 
E 3 HOH A 12 25 25 HOH TIP . 
E 3 HOH A 13 26 26 HOH TIP . 
E 3 HOH A 14 28 28 HOH TIP . 
E 3 HOH A 15 29 29 HOH TIP . 
E 3 HOH A 16 30 30 HOH TIP . 
E 3 HOH A 17 31 31 HOH TIP . 
E 3 HOH A 18 32 32 HOH TIP . 
E 3 HOH A 19 33 33 HOH TIP . 
E 3 HOH A 20 34 34 HOH TIP . 
E 3 HOH A 21 35 35 HOH TIP . 
E 3 HOH A 22 36 36 HOH TIP . 
E 3 HOH A 23 37 37 HOH TIP . 
E 3 HOH A 24 38 38 HOH TIP . 
E 3 HOH A 25 44 44 HOH TIP . 
E 3 HOH A 26 51 51 HOH TIP . 
E 3 HOH A 27 55 55 HOH TIP . 
E 3 HOH A 28 56 56 HOH TIP . 
E 3 HOH A 29 57 57 HOH TIP . 
E 3 HOH A 30 59 59 HOH TIP . 
E 3 HOH A 31 60 60 HOH TIP . 
E 3 HOH A 32 61 61 HOH TIP . 
F 3 HOH B 1 1 1 HOH TIP . 
F 3 HOH B 2 4 4 HOH TIP . 
F 3 HOH B 3 8 8 HOH TIP . 
F 3 HOH B 4 11 11 HOH TIP . 
F 3 HOH B 5 12 12 HOH TIP . 
F 3 HOH B 6 13 13 HOH TIP . 
F 3 HOH B 7 14 14 HOH TIP . 
F 3 HOH B 8 15 15 HOH TIP . 
F 3 HOH B 9 17 17 HOH TIP . 
F 3 HOH B 10 19 19 HOH TIP . 
F 3 HOH B 11 20 20 HOH TIP . 
F 3 HOH B 12 23 23 HOH TIP . 
F 3 HOH B 13 24 24 HOH TIP . 
F 3 HOH B 14 27 27 HOH TIP . 
F 3 HOH B 15 39 39 HOH TIP . 
F 3 HOH B 16 40 40 HOH TIP . 
F 3 HOH B 17 41 41 HOH TIP . 
F 3 HOH B 18 42 42 HOH TIP . 
F 3 HOH B 19 43 43 HOH TIP . 
F 3 HOH B 20 45 45 HOH TIP . 
F 3 HOH B 21 46 46 HOH TIP . 
F 3 HOH B 22 47 47 HOH TIP . 
F 3 HOH B 23 48 48 HOH TIP . 
F 3 HOH B 24 49 49 HOH TIP . 
F 3 HOH B 25 50 50 HOH TIP . 
F 3 HOH B 26 52 52 HOH TIP . 
F 3 HOH B 27 53 53 HOH TIP . 
F 3 HOH B 28 54 54 HOH TIP . 
F 3 HOH B 29 58 58 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 DC8 . . . D 2 91.523 33.342 47.172 1 44.58 ? C4 DC8 81 B 1 
HETATM 2 C C6 DC8 . . . D 2 90.247 31.293 46.95 1 39.71 ? C6 DC8 81 B 1 
HETATM 3 C C8 DC8 . . . D 2 90.601 30.91 48.41 1 39.24 ? C8 DC8 81 B 1 
HETATM 4 C C10 DC8 . . . D 2 91.965 30.153 48.532 1 38.29 ? C10 DC8 81 B 1 
HETATM 5 C C15 DC8 . . . D 2 90.794 32.146 49.335 1 41.07 ? C15 DC8 81 B 1 
HETATM 6 C C17 DC8 . . . D 2 91.331 33.387 48.578 1 43.41 ? C17 DC8 81 B 1 
HETATM 7 C C20 DC8 . . . D 2 90.499 30.117 44.633 1 36.01 ? C20 DC8 81 B 1 
HETATM 8 C C21 DC8 . . . D 2 90.343 29.018 43.757 1 35.57 ? C21 DC8 81 B 1 
HETATM 9 C C22 DC8 . . . D 2 89.74 27.813 44.215 1 36.04 ? C22 DC8 81 B 1 
HETATM 10 C C24 DC8 . . . D 2 89.289 27.715 45.56 1 36.55 ? C24 DC8 81 B 1 
HETATM 11 C C1 DC8 . . . D 2 92.128 35.734 48.598 1 48.15 ? C1 DC8 81 B 1 
HETATM 12 C C2 DC8 . . . D 2 92.323 35.677 47.2 1 46.71 ? C2 DC8 81 B 1 
HETATM 13 C C3 DC8 . . . D 2 92.027 34.499 46.494 1 45.17 ? C3 DC8 81 B 1 
HETATM 14 O O5 DC8 . . . D 2 91.253 32.191 46.396 1 42.77 ? O5 DC8 81 B 1 
HETATM 15 C C11 DC8 . . . D 2 92.626 30.608 49.841 1 38.17 ? C11 DC8 81 B 1 
HETATM 16 F F12 DC8 . . . D 2 92.787 29.507 50.693 1 40.09 ? F12 DC8 81 B 1 
HETATM 17 F F13 DC8 . . . D 2 93.885 31.165 49.59 1 39.9 ? F13 DC8 81 B 1 
HETATM 18 C C14 DC8 . . . D 2 91.719 31.655 50.482 1 39.39 ? C14 DC8 81 B 1 
HETATM 19 C C18 DC8 . . . D 2 91.626 34.6 49.297 1 45.52 ? C18 DC8 81 B 1 
HETATM 20 C C19 DC8 . . . D 2 90.057 30.047 45.993 1 37.66 ? C19 DC8 81 B 1 
HETATM 21 O O23 DC8 . . . D 2 89.599 26.741 43.356 1 33.57 ? O23 DC8 81 B 1 
HETATM 22 C C25 DC8 . . . D 2 89.447 28.824 46.444 1 36.47 ? C25 DC8 81 B 1 
HETATM 23 O O26 DC8 . . . D 2 92.449 36.895 49.27 1 50.67 ? O26 DC8 81 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#