data_2Z4O # _model_server_result.job_id '_jkcAF6AvgL3Pv4aPqDMMw' _model_server_result.datetime_utc '2024-11-27 23:58:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2Z4O # _exptl.entry_id 2Z4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z4O _cell.length_a 58.25 _cell.length_b 85.832 _cell.length_c 45.967 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 60 A ASP 60 1_555 C NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc2 C NA NA . A NA 500 1_555 H O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc3 C NA NA . A NA 500 1_555 H O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 C NA NA . A NA 500 1_555 H O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc5 C NA NA . A NA 500 1_555 H O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc6 C NA NA . A NA 500 1_555 H O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2Z4O _atom_sites.fract_transf_matrix[1][1] 0.017167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 500 500 NA NA . D 3 CL A 1 502 502 CL CL . E 3 CL B 1 501 501 CL CL . F 4 ACT B 1 802 802 ACT ACT . G 5 065 B 1 404 404 065 065 . H 6 HOH A 1 503 1002 HOH HOH . H 6 HOH A 2 504 1004 HOH HOH . H 6 HOH A 3 505 1008 HOH HOH . H 6 HOH A 4 506 1010 HOH HOH . H 6 HOH A 5 507 1012 HOH HOH . H 6 HOH A 6 508 1014 HOH HOH . H 6 HOH A 7 509 1015 HOH HOH . H 6 HOH A 8 510 1020 HOH HOH . H 6 HOH A 9 511 1027 HOH HOH . H 6 HOH A 10 512 1028 HOH HOH . H 6 HOH A 11 513 1029 HOH HOH . H 6 HOH A 12 514 1032 HOH HOH . H 6 HOH A 13 515 1033 HOH HOH . H 6 HOH A 14 516 1035 HOH HOH . H 6 HOH A 15 517 1036 HOH HOH . H 6 HOH A 16 518 1038 HOH HOH . H 6 HOH A 17 519 1041 HOH HOH . H 6 HOH A 18 520 1042 HOH HOH . H 6 HOH A 19 521 1045 HOH HOH . H 6 HOH A 20 522 1046 HOH HOH . H 6 HOH A 21 523 1050 HOH HOH . H 6 HOH A 22 524 1051 HOH HOH . H 6 HOH A 23 525 1053 HOH HOH . H 6 HOH A 24 526 1055 HOH HOH . H 6 HOH A 25 527 1056 HOH HOH . H 6 HOH A 26 528 1057 HOH HOH . H 6 HOH A 27 529 1058 HOH HOH . H 6 HOH A 28 530 1060 HOH HOH . H 6 HOH A 29 531 1061 HOH HOH . H 6 HOH A 30 532 1063 HOH HOH . H 6 HOH A 31 533 1064 HOH HOH . H 6 HOH A 32 534 1066 HOH HOH . H 6 HOH A 33 535 1068 HOH HOH . H 6 HOH A 34 536 1069 HOH HOH . H 6 HOH A 35 537 1073 HOH HOH . H 6 HOH A 36 538 1074 HOH HOH . H 6 HOH A 37 539 1075 HOH HOH . H 6 HOH A 38 540 1080 HOH HOH . H 6 HOH A 39 541 1081 HOH HOH . H 6 HOH A 40 542 1084 HOH HOH . H 6 HOH A 41 543 1087 HOH HOH . H 6 HOH A 42 544 1088 HOH HOH . H 6 HOH A 43 545 1090 HOH HOH . H 6 HOH A 44 546 1092 HOH HOH . H 6 HOH A 45 547 1094 HOH HOH . H 6 HOH A 46 548 1096 HOH HOH . H 6 HOH A 47 549 1098 HOH HOH . H 6 HOH A 48 550 1100 HOH HOH . H 6 HOH A 49 551 1101 HOH HOH . H 6 HOH A 50 552 1102 HOH HOH . H 6 HOH A 51 553 1104 HOH HOH . H 6 HOH A 52 554 1106 HOH HOH . H 6 HOH A 53 555 1108 HOH HOH . H 6 HOH A 54 556 1111 HOH HOH . H 6 HOH A 55 557 1112 HOH HOH . H 6 HOH A 56 558 1113 HOH HOH . H 6 HOH A 57 559 1118 HOH HOH . H 6 HOH A 58 560 1119 HOH HOH . H 6 HOH A 59 561 1124 HOH HOH . H 6 HOH A 60 562 1125 HOH HOH . H 6 HOH A 61 563 1126 HOH HOH . H 6 HOH A 62 564 1127 HOH HOH . H 6 HOH A 63 565 1128 HOH HOH . H 6 HOH A 64 566 1130 HOH HOH . H 6 HOH A 65 567 1131 HOH HOH . H 6 HOH A 66 568 1136 HOH HOH . H 6 HOH A 67 569 1137 HOH HOH . H 6 HOH A 68 570 1140 HOH HOH . H 6 HOH A 69 571 1141 HOH HOH . H 6 HOH A 70 572 1142 HOH HOH . H 6 HOH A 71 573 1144 HOH HOH . H 6 HOH A 72 574 1145 HOH HOH . H 6 HOH A 73 575 1146 HOH HOH . H 6 HOH A 74 576 1152 HOH HOH . H 6 HOH A 75 577 1153 HOH HOH . H 6 HOH A 76 578 1157 HOH HOH . H 6 HOH A 77 579 1158 HOH HOH . H 6 HOH A 78 580 1161 HOH HOH . H 6 HOH A 79 581 1162 HOH HOH . H 6 HOH A 80 582 1164 HOH HOH . H 6 HOH A 81 583 1165 HOH HOH . H 6 HOH A 82 584 1166 HOH HOH . H 6 HOH A 83 585 1172 HOH HOH . H 6 HOH A 84 586 1173 HOH HOH . H 6 HOH A 85 587 1174 HOH HOH . H 6 HOH A 86 588 1178 HOH HOH . H 6 HOH A 87 589 1181 HOH HOH . H 6 HOH A 88 590 1183 HOH HOH . H 6 HOH A 89 591 1184 HOH HOH . H 6 HOH A 90 592 1191 HOH HOH . H 6 HOH A 91 593 1196 HOH HOH . H 6 HOH A 92 594 1197 HOH HOH . H 6 HOH A 93 595 1199 HOH HOH . H 6 HOH A 94 596 1200 HOH HOH . H 6 HOH A 95 597 1202 HOH HOH . H 6 HOH A 96 598 1205 HOH HOH . H 6 HOH A 97 599 1207 HOH HOH . H 6 HOH A 98 600 1210 HOH HOH . H 6 HOH A 99 601 1211 HOH HOH . H 6 HOH A 100 602 1212 HOH HOH . H 6 HOH A 101 603 1214 HOH HOH . H 6 HOH A 102 604 1215 HOH HOH . H 6 HOH A 103 605 1216 HOH HOH . H 6 HOH A 104 606 1217 HOH HOH . H 6 HOH A 105 607 1219 HOH HOH . H 6 HOH A 106 608 1220 HOH HOH . H 6 HOH A 107 609 1222 HOH HOH . H 6 HOH A 108 610 1223 HOH HOH . H 6 HOH A 109 611 1227 HOH HOH . H 6 HOH A 110 612 1230 HOH HOH . H 6 HOH A 111 613 1234 HOH HOH . H 6 HOH A 112 614 1235 HOH HOH . H 6 HOH A 113 615 1237 HOH HOH . H 6 HOH A 114 616 1238 HOH HOH . I 6 HOH B 1 803 1001 HOH HOH . I 6 HOH B 2 804 1003 HOH HOH . I 6 HOH B 3 805 1005 HOH HOH . I 6 HOH B 4 806 1006 HOH HOH . I 6 HOH B 5 807 1007 HOH HOH . I 6 HOH B 6 808 1009 HOH HOH . I 6 HOH B 7 809 1011 HOH HOH . I 6 HOH B 8 810 1013 HOH HOH . I 6 HOH B 9 811 1016 HOH HOH . I 6 HOH B 10 812 1017 HOH HOH . I 6 HOH B 11 813 1018 HOH HOH . I 6 HOH B 12 814 1019 HOH HOH . I 6 HOH B 13 815 1021 HOH HOH . I 6 HOH B 14 816 1022 HOH HOH . I 6 HOH B 15 817 1023 HOH HOH . I 6 HOH B 16 818 1024 HOH HOH . I 6 HOH B 17 819 1025 HOH HOH . I 6 HOH B 18 820 1026 HOH HOH . I 6 HOH B 19 821 1030 HOH HOH . I 6 HOH B 20 822 1031 HOH HOH . I 6 HOH B 21 823 1034 HOH HOH . I 6 HOH B 22 824 1037 HOH HOH . I 6 HOH B 23 825 1039 HOH HOH . I 6 HOH B 24 826 1040 HOH HOH . I 6 HOH B 25 827 1043 HOH HOH . I 6 HOH B 26 828 1044 HOH HOH . I 6 HOH B 27 829 1047 HOH HOH . I 6 HOH B 28 830 1048 HOH HOH . I 6 HOH B 29 831 1049 HOH HOH . I 6 HOH B 30 832 1052 HOH HOH . I 6 HOH B 31 833 1054 HOH HOH . I 6 HOH B 32 834 1059 HOH HOH . I 6 HOH B 33 835 1062 HOH HOH . I 6 HOH B 34 836 1065 HOH HOH . I 6 HOH B 35 837 1067 HOH HOH . I 6 HOH B 36 838 1070 HOH HOH . I 6 HOH B 37 839 1071 HOH HOH . I 6 HOH B 38 840 1072 HOH HOH . I 6 HOH B 39 841 1076 HOH HOH . I 6 HOH B 40 842 1077 HOH HOH . I 6 HOH B 41 843 1078 HOH HOH . I 6 HOH B 42 844 1079 HOH HOH . I 6 HOH B 43 845 1082 HOH HOH . I 6 HOH B 44 846 1083 HOH HOH . I 6 HOH B 45 847 1085 HOH HOH . I 6 HOH B 46 848 1086 HOH HOH . I 6 HOH B 47 849 1089 HOH HOH . I 6 HOH B 48 850 1091 HOH HOH . I 6 HOH B 49 851 1093 HOH HOH . I 6 HOH B 50 852 1095 HOH HOH . I 6 HOH B 51 853 1097 HOH HOH . I 6 HOH B 52 854 1099 HOH HOH . I 6 HOH B 53 855 1103 HOH HOH . I 6 HOH B 54 856 1105 HOH HOH . I 6 HOH B 55 857 1107 HOH HOH . I 6 HOH B 56 858 1109 HOH HOH . I 6 HOH B 57 859 1110 HOH HOH . I 6 HOH B 58 860 1114 HOH HOH . I 6 HOH B 59 861 1115 HOH HOH . I 6 HOH B 60 862 1116 HOH HOH . I 6 HOH B 61 863 1117 HOH HOH . I 6 HOH B 62 864 1120 HOH HOH . I 6 HOH B 63 865 1121 HOH HOH . I 6 HOH B 64 866 1122 HOH HOH . I 6 HOH B 65 867 1123 HOH HOH . I 6 HOH B 66 868 1129 HOH HOH . I 6 HOH B 67 869 1132 HOH HOH . I 6 HOH B 68 870 1133 HOH HOH . I 6 HOH B 69 871 1134 HOH HOH . I 6 HOH B 70 872 1135 HOH HOH . I 6 HOH B 71 873 1138 HOH HOH . I 6 HOH B 72 874 1139 HOH HOH . I 6 HOH B 73 875 1143 HOH HOH . I 6 HOH B 74 876 1147 HOH HOH . I 6 HOH B 75 877 1148 HOH HOH . I 6 HOH B 76 878 1149 HOH HOH . I 6 HOH B 77 879 1150 HOH HOH . I 6 HOH B 78 880 1151 HOH HOH . I 6 HOH B 79 881 1154 HOH HOH . I 6 HOH B 80 882 1155 HOH HOH . I 6 HOH B 81 883 1156 HOH HOH . I 6 HOH B 82 884 1159 HOH HOH . I 6 HOH B 83 885 1160 HOH HOH . I 6 HOH B 84 886 1163 HOH HOH . I 6 HOH B 85 887 1167 HOH HOH . I 6 HOH B 86 888 1168 HOH HOH . I 6 HOH B 87 889 1169 HOH HOH . I 6 HOH B 88 890 1170 HOH HOH . I 6 HOH B 89 891 1171 HOH HOH . I 6 HOH B 90 892 1175 HOH HOH . I 6 HOH B 91 893 1176 HOH HOH . I 6 HOH B 92 894 1177 HOH HOH . I 6 HOH B 93 895 1179 HOH HOH . I 6 HOH B 94 896 1180 HOH HOH . I 6 HOH B 95 897 1182 HOH HOH . I 6 HOH B 96 898 1185 HOH HOH . I 6 HOH B 97 899 1186 HOH HOH . I 6 HOH B 98 900 1187 HOH HOH . I 6 HOH B 99 901 1188 HOH HOH . I 6 HOH B 100 902 1189 HOH HOH . I 6 HOH B 101 903 1190 HOH HOH . I 6 HOH B 102 904 1192 HOH HOH . I 6 HOH B 103 905 1193 HOH HOH . I 6 HOH B 104 906 1194 HOH HOH . I 6 HOH B 105 907 1195 HOH HOH . I 6 HOH B 106 908 1198 HOH HOH . I 6 HOH B 107 909 1201 HOH HOH . I 6 HOH B 108 910 1203 HOH HOH . I 6 HOH B 109 911 1204 HOH HOH . I 6 HOH B 110 912 1206 HOH HOH . I 6 HOH B 111 913 1208 HOH HOH . I 6 HOH B 112 914 1209 HOH HOH . I 6 HOH B 113 915 1213 HOH HOH . I 6 HOH B 114 916 1218 HOH HOH . I 6 HOH B 115 917 1221 HOH HOH . I 6 HOH B 116 918 1224 HOH HOH . I 6 HOH B 117 919 1225 HOH HOH . I 6 HOH B 118 920 1226 HOH HOH . I 6 HOH B 119 921 1229 HOH HOH . I 6 HOH B 120 922 1231 HOH HOH . I 6 HOH B 121 923 1232 HOH HOH . I 6 HOH B 122 924 1233 HOH HOH . I 6 HOH B 123 925 1236 HOH HOH . I 6 HOH B 124 926 1239 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.166 _atom_site.Cartn_y 39.742 _atom_site.Cartn_z 1.333 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #