data_2Z5D # _model_server_result.job_id 4uY76oTsOa48CYeAFE1w9g _model_server_result.datetime_utc '2024-11-16 04:51:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":180}' # _entry.id 2Z5D # _exptl.entry_id 2Z5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z5D _cell.length_a 42.959 _cell.length_b 85.861 _cell.length_c 102.558 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O ILE 38 B ILE 38 1_555 C NA NA . B NA 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 B O SER 40 B SER 40 1_555 C NA NA . B NA 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc3 B O HIS 42 B HIS 42 1_555 C NA NA . B NA 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 C NA NA . B NA 180 1_555 E O HOH . B HOH 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc5 C NA NA . B NA 180 1_555 E O HOH . B HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2Z5D _atom_sites.fract_transf_matrix[1][1] 0.023278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA B 1 180 1 NA NA . D 3 HOH A 1 180 1 HOH HOH . D 3 HOH A 2 181 2 HOH HOH . D 3 HOH A 3 182 3 HOH HOH . D 3 HOH A 4 183 4 HOH HOH . D 3 HOH A 5 184 5 HOH HOH . D 3 HOH A 6 185 7 HOH HOH . D 3 HOH A 7 186 8 HOH HOH . D 3 HOH A 8 187 10 HOH HOH . D 3 HOH A 9 188 11 HOH HOH . D 3 HOH A 10 189 14 HOH HOH . D 3 HOH A 11 190 15 HOH HOH . D 3 HOH A 12 191 23 HOH HOH . D 3 HOH A 13 192 24 HOH HOH . D 3 HOH A 14 193 25 HOH HOH . D 3 HOH A 15 194 28 HOH HOH . D 3 HOH A 16 195 29 HOH HOH . D 3 HOH A 17 196 31 HOH HOH . D 3 HOH A 18 197 35 HOH HOH . D 3 HOH A 19 198 37 HOH HOH . D 3 HOH A 20 199 43 HOH HOH . D 3 HOH A 21 200 44 HOH HOH . D 3 HOH A 22 201 46 HOH HOH . D 3 HOH A 23 202 50 HOH HOH . D 3 HOH A 24 203 51 HOH HOH . D 3 HOH A 25 204 53 HOH HOH . D 3 HOH A 26 205 54 HOH HOH . D 3 HOH A 27 206 55 HOH HOH . D 3 HOH A 28 207 56 HOH HOH . D 3 HOH A 29 208 60 HOH HOH . D 3 HOH A 30 209 61 HOH HOH . D 3 HOH A 31 210 63 HOH HOH . D 3 HOH A 32 211 69 HOH HOH . D 3 HOH A 33 212 70 HOH HOH . D 3 HOH A 34 213 75 HOH HOH . D 3 HOH A 35 214 76 HOH HOH . D 3 HOH A 36 215 78 HOH HOH . D 3 HOH A 37 216 90 HOH HOH . D 3 HOH A 38 217 96 HOH HOH . D 3 HOH A 39 218 97 HOH HOH . D 3 HOH A 40 219 98 HOH HOH . D 3 HOH A 41 220 102 HOH HOH . D 3 HOH A 42 221 104 HOH HOH . D 3 HOH A 43 222 108 HOH HOH . D 3 HOH A 44 223 111 HOH HOH . D 3 HOH A 45 224 114 HOH HOH . D 3 HOH A 46 225 115 HOH HOH . D 3 HOH A 47 226 116 HOH HOH . D 3 HOH A 48 227 120 HOH HOH . D 3 HOH A 49 228 123 HOH HOH . D 3 HOH A 50 229 124 HOH HOH . D 3 HOH A 51 230 128 HOH HOH . D 3 HOH A 52 231 129 HOH HOH . D 3 HOH A 53 232 130 HOH HOH . D 3 HOH A 54 233 131 HOH HOH . D 3 HOH A 55 234 132 HOH HOH . D 3 HOH A 56 235 139 HOH HOH . D 3 HOH A 57 236 140 HOH HOH . D 3 HOH A 58 237 141 HOH HOH . D 3 HOH A 59 238 144 HOH HOH . D 3 HOH A 60 239 146 HOH HOH . D 3 HOH A 61 240 148 HOH HOH . D 3 HOH A 62 241 149 HOH HOH . D 3 HOH A 63 242 150 HOH HOH . D 3 HOH A 64 243 152 HOH HOH . D 3 HOH A 65 244 153 HOH HOH . D 3 HOH A 66 245 157 HOH HOH . D 3 HOH A 67 246 158 HOH HOH . D 3 HOH A 68 247 159 HOH HOH . D 3 HOH A 69 248 160 HOH HOH . D 3 HOH A 70 249 161 HOH HOH . D 3 HOH A 71 250 163 HOH HOH . D 3 HOH A 72 251 165 HOH HOH . D 3 HOH A 73 252 167 HOH HOH . D 3 HOH A 74 253 168 HOH HOH . D 3 HOH A 75 254 169 HOH HOH . D 3 HOH A 76 255 171 HOH HOH . D 3 HOH A 77 256 172 HOH HOH . D 3 HOH A 78 257 173 HOH HOH . D 3 HOH A 79 258 174 HOH HOH . D 3 HOH A 80 259 175 HOH HOH . D 3 HOH A 81 260 178 HOH HOH . D 3 HOH A 82 261 180 HOH HOH . D 3 HOH A 83 263 182 HOH HOH . D 3 HOH A 84 264 183 HOH HOH . D 3 HOH A 85 265 184 HOH HOH . D 3 HOH A 86 266 188 HOH HOH . D 3 HOH A 87 267 189 HOH HOH . D 3 HOH A 88 268 190 HOH HOH . D 3 HOH A 89 269 192 HOH HOH . D 3 HOH A 90 270 193 HOH HOH . D 3 HOH A 91 273 166 HOH HOH . E 3 HOH B 1 181 181 HOH HOH . E 3 HOH B 2 182 6 HOH HOH . E 3 HOH B 3 183 9 HOH HOH . E 3 HOH B 4 184 12 HOH HOH . E 3 HOH B 5 185 13 HOH HOH . E 3 HOH B 6 186 16 HOH HOH . E 3 HOH B 7 187 17 HOH HOH . E 3 HOH B 8 188 18 HOH HOH . E 3 HOH B 9 189 19 HOH HOH . E 3 HOH B 10 190 20 HOH HOH . E 3 HOH B 11 191 21 HOH HOH . E 3 HOH B 12 192 22 HOH HOH . E 3 HOH B 13 193 26 HOH HOH . E 3 HOH B 14 194 27 HOH HOH . E 3 HOH B 15 195 30 HOH HOH . E 3 HOH B 16 196 32 HOH HOH . E 3 HOH B 17 197 33 HOH HOH . E 3 HOH B 18 198 34 HOH HOH . E 3 HOH B 19 199 36 HOH HOH . E 3 HOH B 20 200 38 HOH HOH . E 3 HOH B 21 201 39 HOH HOH . E 3 HOH B 22 202 40 HOH HOH . E 3 HOH B 23 203 41 HOH HOH . E 3 HOH B 24 204 42 HOH HOH . E 3 HOH B 25 205 45 HOH HOH . E 3 HOH B 26 206 47 HOH HOH . E 3 HOH B 27 207 48 HOH HOH . E 3 HOH B 28 208 49 HOH HOH . E 3 HOH B 29 209 52 HOH HOH . E 3 HOH B 30 210 57 HOH HOH . E 3 HOH B 31 211 58 HOH HOH . E 3 HOH B 32 212 59 HOH HOH . E 3 HOH B 33 213 62 HOH HOH . E 3 HOH B 34 214 64 HOH HOH . E 3 HOH B 35 215 65 HOH HOH . E 3 HOH B 36 216 66 HOH HOH . E 3 HOH B 37 217 67 HOH HOH . E 3 HOH B 38 218 68 HOH HOH . E 3 HOH B 39 219 71 HOH HOH . E 3 HOH B 40 220 72 HOH HOH . E 3 HOH B 41 221 73 HOH HOH . E 3 HOH B 42 222 77 HOH HOH . E 3 HOH B 43 223 79 HOH HOH . E 3 HOH B 44 224 80 HOH HOH . E 3 HOH B 45 225 81 HOH HOH . E 3 HOH B 46 226 82 HOH HOH . E 3 HOH B 47 227 83 HOH HOH . E 3 HOH B 48 228 84 HOH HOH . E 3 HOH B 49 229 85 HOH HOH . E 3 HOH B 50 230 86 HOH HOH . E 3 HOH B 51 231 87 HOH HOH . E 3 HOH B 52 232 88 HOH HOH . E 3 HOH B 53 233 89 HOH HOH . E 3 HOH B 54 234 91 HOH HOH . E 3 HOH B 55 235 92 HOH HOH . E 3 HOH B 56 236 93 HOH HOH . E 3 HOH B 57 237 94 HOH HOH . E 3 HOH B 58 238 95 HOH HOH . E 3 HOH B 59 239 99 HOH HOH . E 3 HOH B 60 240 100 HOH HOH . E 3 HOH B 61 241 101 HOH HOH . E 3 HOH B 62 242 103 HOH HOH . E 3 HOH B 63 243 105 HOH HOH . E 3 HOH B 64 244 106 HOH HOH . E 3 HOH B 65 245 107 HOH HOH . E 3 HOH B 66 246 109 HOH HOH . E 3 HOH B 67 247 110 HOH HOH . E 3 HOH B 68 248 112 HOH HOH . E 3 HOH B 69 249 113 HOH HOH . E 3 HOH B 70 250 117 HOH HOH . E 3 HOH B 71 251 118 HOH HOH . E 3 HOH B 72 252 119 HOH HOH . E 3 HOH B 73 253 121 HOH HOH . E 3 HOH B 74 254 122 HOH HOH . E 3 HOH B 75 255 125 HOH HOH . E 3 HOH B 76 256 126 HOH HOH . E 3 HOH B 77 257 127 HOH HOH . E 3 HOH B 78 258 133 HOH HOH . E 3 HOH B 79 259 134 HOH HOH . E 3 HOH B 80 260 135 HOH HOH . E 3 HOH B 81 261 136 HOH HOH . E 3 HOH B 82 262 137 HOH HOH . E 3 HOH B 83 263 138 HOH HOH . E 3 HOH B 84 264 142 HOH HOH . E 3 HOH B 85 265 143 HOH HOH . E 3 HOH B 86 266 145 HOH HOH . E 3 HOH B 87 267 147 HOH HOH . E 3 HOH B 88 268 151 HOH HOH . E 3 HOH B 89 269 154 HOH HOH . E 3 HOH B 90 270 155 HOH HOH . E 3 HOH B 91 271 156 HOH HOH . E 3 HOH B 92 272 162 HOH HOH . E 3 HOH B 93 273 164 HOH HOH . E 3 HOH B 94 274 176 HOH HOH . E 3 HOH B 95 275 177 HOH HOH . E 3 HOH B 96 276 179 HOH HOH . E 3 HOH B 97 277 186 HOH HOH . E 3 HOH B 98 278 187 HOH HOH . E 3 HOH B 99 279 191 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.289 _atom_site.Cartn_y 88.404 _atom_site.Cartn_z 52.43 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 180 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #