data_2Z5X # _model_server_result.job_id 2qaUMpAIupjgh03sbJ5ghw _model_server_result.datetime_utc '2025-02-26 16:07:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":3}' # _entry.id 2Z5X # _exptl.entry_id 2Z5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z5X _cell.length_a 135.263 _cell.length_b 218.706 _cell.length_c 54.373 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 135.263 0 0 3 'crystal symmetry operation' 3_654 -x+1,y,-z-1 -1 0 0 0 1 0 0 0 -1 135.263 0 -54.373 4 'crystal symmetry operation' 4_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -54.373 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 260 n n C1 C2 GOL sing 261 n n C1 H11 GOL sing 262 n n C1 H12 GOL sing 263 n n O1 HO1 GOL sing 264 n n C2 O2 GOL sing 265 n n C2 C3 GOL sing 266 n n C2 H2 GOL sing 267 n n O2 HO2 GOL sing 268 n n C3 O3 GOL sing 269 n n C3 H31 GOL sing 270 n n C3 H32 GOL sing 271 n n O3 HO3 GOL sing 272 n n # _atom_sites.entry_id 2Z5X _atom_sites.fract_transf_matrix[1][1] 0.007393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 600 600 FAD FAD . C 3 HRM A 1 700 700 HRM HAR . D 4 DCX A 1 1 1 DCX APO . E 4 DCX A 1 2 2 DCX APO . F 5 GOL A 1 701 1 GOL GOL . G 5 GOL A 1 702 2 GOL GOL . H 5 GOL A 1 3 3 GOL GOL . I 6 HOH A 1 703 1 HOH HOH . I 6 HOH A 2 704 2 HOH HOH . I 6 HOH A 3 705 3 HOH HOH . I 6 HOH A 4 706 4 HOH HOH . I 6 HOH A 5 707 5 HOH HOH . I 6 HOH A 6 708 6 HOH HOH . I 6 HOH A 7 709 7 HOH HOH . I 6 HOH A 8 710 8 HOH HOH . I 6 HOH A 9 711 9 HOH HOH . I 6 HOH A 10 712 10 HOH HOH . I 6 HOH A 11 713 11 HOH HOH . I 6 HOH A 12 714 12 HOH HOH . I 6 HOH A 13 715 13 HOH HOH . I 6 HOH A 14 716 14 HOH HOH . I 6 HOH A 15 717 15 HOH HOH . I 6 HOH A 16 718 16 HOH HOH . I 6 HOH A 17 719 17 HOH HOH . I 6 HOH A 18 720 18 HOH HOH . I 6 HOH A 19 721 19 HOH HOH . I 6 HOH A 20 722 20 HOH HOH . I 6 HOH A 21 723 21 HOH HOH . I 6 HOH A 22 724 22 HOH HOH . I 6 HOH A 23 725 23 HOH HOH . I 6 HOH A 24 726 24 HOH HOH . I 6 HOH A 25 727 25 HOH HOH . I 6 HOH A 26 728 26 HOH HOH . I 6 HOH A 27 729 27 HOH HOH . I 6 HOH A 28 730 28 HOH HOH . I 6 HOH A 29 731 29 HOH HOH . I 6 HOH A 30 732 30 HOH HOH . I 6 HOH A 31 733 31 HOH HOH . I 6 HOH A 32 734 32 HOH HOH . I 6 HOH A 33 735 33 HOH HOH . I 6 HOH A 34 736 34 HOH HOH . I 6 HOH A 35 737 35 HOH HOH . I 6 HOH A 36 738 36 HOH HOH . I 6 HOH A 37 739 37 HOH HOH . I 6 HOH A 38 740 38 HOH HOH . I 6 HOH A 39 741 39 HOH HOH . I 6 HOH A 40 742 40 HOH HOH . I 6 HOH A 41 743 41 HOH HOH . I 6 HOH A 42 744 42 HOH HOH . I 6 HOH A 43 745 43 HOH HOH . I 6 HOH A 44 746 44 HOH HOH . I 6 HOH A 45 747 45 HOH HOH . I 6 HOH A 46 748 46 HOH HOH . I 6 HOH A 47 749 47 HOH HOH . I 6 HOH A 48 750 48 HOH HOH . I 6 HOH A 49 751 49 HOH HOH . I 6 HOH A 50 752 50 HOH HOH . I 6 HOH A 51 753 51 HOH HOH . I 6 HOH A 52 754 52 HOH HOH . I 6 HOH A 53 755 53 HOH HOH . I 6 HOH A 54 756 54 HOH HOH . I 6 HOH A 55 757 55 HOH HOH . I 6 HOH A 56 758 56 HOH HOH . I 6 HOH A 57 759 57 HOH HOH . I 6 HOH A 58 760 58 HOH HOH . I 6 HOH A 59 761 59 HOH HOH . I 6 HOH A 60 762 60 HOH HOH . I 6 HOH A 61 763 61 HOH HOH . I 6 HOH A 62 764 62 HOH HOH . I 6 HOH A 63 765 63 HOH HOH . I 6 HOH A 64 766 64 HOH HOH . I 6 HOH A 65 767 65 HOH HOH . I 6 HOH A 66 768 66 HOH HOH . I 6 HOH A 67 769 67 HOH HOH . I 6 HOH A 68 770 68 HOH HOH . I 6 HOH A 69 771 69 HOH HOH . I 6 HOH A 70 772 70 HOH HOH . I 6 HOH A 71 773 71 HOH HOH . I 6 HOH A 72 774 72 HOH HOH . I 6 HOH A 73 775 73 HOH HOH . I 6 HOH A 74 776 74 HOH HOH . I 6 HOH A 75 777 75 HOH HOH . I 6 HOH A 76 778 76 HOH HOH . I 6 HOH A 77 779 77 HOH HOH . I 6 HOH A 78 780 78 HOH HOH . I 6 HOH A 79 781 79 HOH HOH . I 6 HOH A 80 782 80 HOH HOH . I 6 HOH A 81 783 81 HOH HOH . I 6 HOH A 82 784 82 HOH HOH . I 6 HOH A 83 785 83 HOH HOH . I 6 HOH A 84 786 84 HOH HOH . I 6 HOH A 85 787 85 HOH HOH . I 6 HOH A 86 788 86 HOH HOH . I 6 HOH A 87 789 87 HOH HOH . I 6 HOH A 88 790 88 HOH HOH . I 6 HOH A 89 791 89 HOH HOH . I 6 HOH A 90 792 90 HOH HOH . I 6 HOH A 91 793 91 HOH HOH . I 6 HOH A 92 794 92 HOH HOH . I 6 HOH A 93 795 93 HOH HOH . I 6 HOH A 94 796 94 HOH HOH . I 6 HOH A 95 797 95 HOH HOH . I 6 HOH A 96 798 96 HOH HOH . I 6 HOH A 97 799 97 HOH HOH . I 6 HOH A 98 800 98 HOH HOH . I 6 HOH A 99 801 99 HOH HOH . I 6 HOH A 100 802 100 HOH HOH . I 6 HOH A 101 803 101 HOH HOH . I 6 HOH A 102 804 102 HOH HOH . I 6 HOH A 103 805 103 HOH HOH . I 6 HOH A 104 806 104 HOH HOH . I 6 HOH A 105 807 105 HOH HOH . I 6 HOH A 106 808 106 HOH HOH . I 6 HOH A 107 809 107 HOH HOH . I 6 HOH A 108 810 108 HOH HOH . I 6 HOH A 109 811 109 HOH HOH . I 6 HOH A 110 812 110 HOH HOH . I 6 HOH A 111 813 111 HOH HOH . I 6 HOH A 112 814 112 HOH HOH . I 6 HOH A 113 815 113 HOH HOH . I 6 HOH A 114 816 114 HOH HOH . I 6 HOH A 115 817 115 HOH HOH . I 6 HOH A 116 818 116 HOH HOH . I 6 HOH A 117 819 117 HOH HOH . I 6 HOH A 118 820 118 HOH HOH . I 6 HOH A 119 821 119 HOH HOH . I 6 HOH A 120 822 120 HOH HOH . I 6 HOH A 121 823 121 HOH HOH . I 6 HOH A 122 824 122 HOH HOH . I 6 HOH A 123 825 123 HOH HOH . I 6 HOH A 124 826 124 HOH HOH . I 6 HOH A 125 827 125 HOH HOH . I 6 HOH A 126 828 126 HOH HOH . I 6 HOH A 127 829 127 HOH HOH . I 6 HOH A 128 830 128 HOH HOH . I 6 HOH A 129 831 129 HOH HOH . I 6 HOH A 130 832 130 HOH HOH . I 6 HOH A 131 833 131 HOH HOH . I 6 HOH A 132 834 132 HOH HOH . I 6 HOH A 133 835 133 HOH HOH . I 6 HOH A 134 836 134 HOH HOH . I 6 HOH A 135 837 135 HOH HOH . I 6 HOH A 136 838 136 HOH HOH . I 6 HOH A 137 839 137 HOH HOH . I 6 HOH A 138 840 138 HOH HOH . I 6 HOH A 139 841 139 HOH HOH . I 6 HOH A 140 842 140 HOH HOH . I 6 HOH A 141 843 141 HOH HOH . I 6 HOH A 142 844 142 HOH HOH . I 6 HOH A 143 845 143 HOH HOH . I 6 HOH A 144 846 144 HOH HOH . I 6 HOH A 145 847 145 HOH HOH . I 6 HOH A 146 848 146 HOH HOH . I 6 HOH A 147 849 147 HOH HOH . I 6 HOH A 148 850 148 HOH HOH . I 6 HOH A 149 851 149 HOH HOH . I 6 HOH A 150 852 150 HOH HOH . I 6 HOH A 151 853 151 HOH HOH . I 6 HOH A 152 854 152 HOH HOH . I 6 HOH A 153 855 153 HOH HOH . I 6 HOH A 154 856 154 HOH HOH . I 6 HOH A 155 857 155 HOH HOH . I 6 HOH A 156 858 156 HOH HOH . I 6 HOH A 157 859 157 HOH HOH . I 6 HOH A 158 860 158 HOH HOH . I 6 HOH A 159 861 159 HOH HOH . I 6 HOH A 160 862 160 HOH HOH . I 6 HOH A 161 863 161 HOH HOH . I 6 HOH A 162 864 162 HOH HOH . I 6 HOH A 163 865 163 HOH HOH . I 6 HOH A 164 866 164 HOH HOH . I 6 HOH A 165 867 165 HOH HOH . I 6 HOH A 166 868 166 HOH HOH . I 6 HOH A 167 869 167 HOH HOH . I 6 HOH A 168 870 168 HOH HOH . I 6 HOH A 169 871 169 HOH HOH . I 6 HOH A 170 872 170 HOH HOH . I 6 HOH A 171 873 171 HOH HOH . I 6 HOH A 172 874 172 HOH HOH . I 6 HOH A 173 875 173 HOH HOH . I 6 HOH A 174 876 174 HOH HOH . I 6 HOH A 175 877 175 HOH HOH . I 6 HOH A 176 878 176 HOH HOH . I 6 HOH A 177 879 177 HOH HOH . I 6 HOH A 178 880 178 HOH HOH . I 6 HOH A 179 881 179 HOH HOH . I 6 HOH A 180 882 180 HOH HOH . I 6 HOH A 181 883 181 HOH HOH . I 6 HOH A 182 884 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 41.748 45.362 -24.425 1 45.71 ? C1 GOL 3 A 1 HETATM 2 O O1 GOL . . . H 5 41.684 45.024 -25.82 1 38.67 ? O1 GOL 3 A 1 HETATM 3 C C2 GOL . . . H 5 42.555 46.59 -23.885 1 42.15 ? C2 GOL 3 A 1 HETATM 4 O O2 GOL . . . H 5 42.068 47.847 -24.317 1 46.85 ? O2 GOL 3 A 1 HETATM 5 C C3 GOL . . . H 5 42.719 46.662 -22.352 1 43.12 ? C3 GOL 3 A 1 HETATM 6 O O3 GOL . . . H 5 43.765 45.914 -21.715 1 39.33 ? O3 GOL 3 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #