data_2Z6A # _model_server_result.job_id L18Ycw8RKaS98Dn9Ds9l5w _model_server_result.datetime_utc '2024-11-12 20:37:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":328}' # _entry.id 2Z6A # _exptl.entry_id 2Z6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Z6A _cell.length_a 98.49 _cell.length_b 98.49 _cell.length_c 323.61 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'DG-DC PAIR' hydrog1 A N1 DG 1 C DG 402 1_555 B N3 DC 13 D DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog2 A N1 DA 2 C DA 403 1_555 B N3 DT 12 D DT 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DT 3 C DT 404 1_555 B N1 DA 11 D DA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O4 DT 3 C DT 404 1_555 B N6 DA 11 D DA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DA 4 C DA 405 1_555 B N3 DT 10 D DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N6 DA 4 C DA 405 1_555 B O4 DT 10 D DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 5 C DG 406 1_555 B N3 DC 9 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 5 C DG 406 1_555 B O2 DC 9 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 5 C DG 406 1_555 B N4 DC 9 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DC 6 C DC 407 1_555 B N1 DG 8 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 DC 6 C DC 407 1_555 B O6 DG 8 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 DC 6 C DC 407 1_555 B N2 DG 8 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 8 C DC 409 1_555 B N1 DG 6 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 8 C DC 409 1_555 B O6 DG 6 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 8 C DC 409 1_555 B N2 DG 6 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 9 C DT 410 1_555 B N1 DA 5 D DA 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 9 C DT 410 1_555 B N6 DA 5 D DA 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DA 10 C DA 411 1_555 B N3 DT 4 D DT 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N6 DA 10 C DA 411 1_555 B O4 DT 4 D DT 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DT 11 C DT 412 1_555 B N1 DA 3 D DA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 DT 11 C DT 412 1_555 B N6 DA 3 D DA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DC 12 C DC 413 1_555 B N1 DG 2 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 DC 12 C DC 413 1_555 B O6 DG 2 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 DC 12 C DC 413 1_555 B N2 DG 2 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 426 n n N HN1 SAH sing 427 n n N HN2 SAH sing 428 n n CA CB SAH sing 429 n n CA C SAH sing 430 n n CA HA SAH sing 431 n n CB CG SAH sing 432 n n CB HB1 SAH sing 433 n n CB HB2 SAH sing 434 n n CG SD SAH sing 435 n n CG HG1 SAH sing 436 n n CG HG2 SAH sing 437 n n SD C5' SAH sing 438 n n C O SAH doub 439 n n C OXT SAH sing 440 n n OXT HXT SAH sing 441 n n C5' C4' SAH sing 442 n n C5' "H5'1" SAH sing 443 n n C5' "H5'2" SAH sing 444 n n C4' O4' SAH sing 445 n n C4' C3' SAH sing 446 n n C4' H4' SAH sing 447 n n O4' C1' SAH sing 448 n n C3' O3' SAH sing 449 n n C3' C2' SAH sing 450 n n C3' H3' SAH sing 451 n n O3' HO3' SAH sing 452 n n C2' O2' SAH sing 453 n n C2' C1' SAH sing 454 n n C2' H2' SAH sing 455 n n O2' HO2' SAH sing 456 n n C1' N9 SAH sing 457 n n C1' H1' SAH sing 458 n n N9 C8 SAH sing 459 n y N9 C4 SAH sing 460 n y C8 N7 SAH doub 461 n y C8 H8 SAH sing 462 n n N7 C5 SAH sing 463 n y C5 C6 SAH sing 464 n y C5 C4 SAH doub 465 n y C6 N6 SAH sing 466 n n C6 N1 SAH doub 467 n y N6 HN61 SAH sing 468 n n N6 HN62 SAH sing 469 n n N1 C2 SAH sing 470 n y C2 N3 SAH doub 471 n y C2 H2 SAH sing 472 n n N3 C4 SAH sing 473 n y # _atom_sites.entry_id 2Z6A _atom_sites.fract_transf_matrix[1][1] 0.010153 _atom_sites.fract_transf_matrix[1][2] 0.005862 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SAH A 1 328 328 SAH SAH . E 5 HOH C 1 349 349 HOH HOH . F 5 HOH D 1 331 331 HOH HOH . F 5 HOH D 2 337 337 HOH HOH . F 5 HOH D 3 358 358 HOH HOH . F 5 HOH D 4 365 365 HOH HOH . G 5 HOH A 1 329 329 HOH HOH . G 5 HOH A 2 330 330 HOH HOH . G 5 HOH A 3 332 332 HOH HOH . G 5 HOH A 4 333 333 HOH HOH . G 5 HOH A 5 334 334 HOH HOH . G 5 HOH A 6 335 335 HOH HOH . G 5 HOH A 7 336 336 HOH HOH . G 5 HOH A 8 338 338 HOH HOH . G 5 HOH A 9 339 339 HOH HOH . G 5 HOH A 10 340 340 HOH HOH . G 5 HOH A 11 341 341 HOH HOH . G 5 HOH A 12 342 342 HOH HOH . G 5 HOH A 13 343 343 HOH HOH . G 5 HOH A 14 344 344 HOH HOH . G 5 HOH A 15 345 345 HOH HOH . G 5 HOH A 16 346 346 HOH HOH . G 5 HOH A 17 347 347 HOH HOH . G 5 HOH A 18 348 348 HOH HOH . G 5 HOH A 19 350 350 HOH HOH . G 5 HOH A 20 351 351 HOH HOH . G 5 HOH A 21 352 352 HOH HOH . G 5 HOH A 22 353 353 HOH HOH . G 5 HOH A 23 354 354 HOH HOH . G 5 HOH A 24 355 355 HOH HOH . G 5 HOH A 25 356 356 HOH HOH . G 5 HOH A 26 357 357 HOH HOH . G 5 HOH A 27 359 359 HOH HOH . G 5 HOH A 28 360 360 HOH HOH . G 5 HOH A 29 361 361 HOH HOH . G 5 HOH A 30 362 362 HOH HOH . G 5 HOH A 31 363 363 HOH HOH . G 5 HOH A 32 364 364 HOH HOH . G 5 HOH A 33 366 366 HOH HOH . G 5 HOH A 34 367 367 HOH HOH . G 5 HOH A 35 368 368 HOH HOH . G 5 HOH A 36 369 369 HOH HOH . G 5 HOH A 37 370 370 HOH HOH . G 5 HOH A 38 371 371 HOH HOH . G 5 HOH A 39 372 372 HOH HOH . G 5 HOH A 40 373 373 HOH HOH . G 5 HOH A 41 374 374 HOH HOH . G 5 HOH A 42 375 375 HOH HOH . G 5 HOH A 43 376 376 HOH HOH . G 5 HOH A 44 377 377 HOH HOH . G 5 HOH A 45 378 378 HOH HOH . G 5 HOH A 46 379 379 HOH HOH . G 5 HOH A 47 380 380 HOH HOH . G 5 HOH A 48 381 381 HOH HOH . G 5 HOH A 49 382 382 HOH HOH . G 5 HOH A 50 383 383 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 4 -18.446 31.047 80.518 1 29.8 ? N SAH 328 A 1 HETATM 2 C CA SAH . . . D 4 -19.068 30.403 81.751 1 32.07 ? CA SAH 328 A 1 HETATM 3 C CB SAH . . . D 4 -18.905 31.05 83.074 1 31.12 ? CB SAH 328 A 1 HETATM 4 C CG SAH . . . D 4 -17.514 31.369 83.548 1 31.29 ? CG SAH 328 A 1 HETATM 5 S SD SAH . . . D 4 -17.672 31.889 85.289 1 32.94 ? SD SAH 328 A 1 HETATM 6 C C SAH . . . D 4 -20.602 30.173 81.441 1 33.4 ? C SAH 328 A 1 HETATM 7 O O SAH . . . D 4 -21.059 30.499 80.348 1 35.59 ? O SAH 328 A 1 HETATM 8 O OXT SAH . . . D 4 -21.292 29.641 82.381 1 36.07 ? OXT SAH 328 A 1 HETATM 9 C C5' SAH . . . D 4 -16.166 31.343 85.941 1 30 ? C5' SAH 328 A 1 HETATM 10 C C4' SAH . . . D 4 -16.296 29.815 86.365 1 29.84 ? C4' SAH 328 A 1 HETATM 11 O O4' SAH . . . D 4 -15.012 29.555 86.868 1 31.42 ? O4' SAH 328 A 1 HETATM 12 C C3' SAH . . . D 4 -17.216 29.515 87.52 1 28.55 ? C3' SAH 328 A 1 HETATM 13 O O3' SAH . . . D 4 -18.268 28.668 87.121 1 26.84 ? O3' SAH 328 A 1 HETATM 14 C C2' SAH . . . D 4 -16.246 28.885 88.578 1 29.83 ? C2' SAH 328 A 1 HETATM 15 O O2' SAH . . . D 4 -16.883 27.897 89.353 1 28.7 ? O2' SAH 328 A 1 HETATM 16 C C1' SAH . . . D 4 -15.104 28.377 87.709 1 31.26 ? C1' SAH 328 A 1 HETATM 17 N N9 SAH . . . D 4 -13.907 28.203 88.285 1 33.71 ? N9 SAH 328 A 1 HETATM 18 C C8 SAH . . . D 4 -13.114 29.016 89.075 1 33.22 ? C8 SAH 328 A 1 HETATM 19 N N7 SAH . . . D 4 -11.997 28.5 89.447 1 35.01 ? N7 SAH 328 A 1 HETATM 20 C C5 SAH . . . D 4 -11.991 27.199 88.87 1 34.93 ? C5 SAH 328 A 1 HETATM 21 C C6 SAH . . . D 4 -11.01 26.132 88.917 1 34.83 ? C6 SAH 328 A 1 HETATM 22 N N6 SAH . . . D 4 -9.843 26.209 89.574 1 34.4 ? N6 SAH 328 A 1 HETATM 23 N N1 SAH . . . D 4 -11.361 25.002 88.227 1 33.92 ? N1 SAH 328 A 1 HETATM 24 C C2 SAH . . . D 4 -12.537 24.877 87.541 1 35.19 ? C2 SAH 328 A 1 HETATM 25 N N3 SAH . . . D 4 -13.498 25.869 87.469 1 34.25 ? N3 SAH 328 A 1 HETATM 26 C C4 SAH . . . D 4 -13.154 26.999 88.155 1 34.58 ? C4 SAH 328 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #