data_2Z6C # _model_server_result.job_id uNyelgeQo_OuRkPmTo4Byw _model_server_result.datetime_utc '2024-11-27 01:59:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 2Z6C # _exptl.entry_id 2Z6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z6C _cell.length_a 61.15 _cell.length_b 64.92 _cell.length_c 70.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 82 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 261 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 82 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 261 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.083 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 2Z6C _atom_sites.fract_transf_matrix[1][1] 0.016353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 500 500 FMN FMN . D 2 FMN B 1 500 500 FMN FMN . E 3 HOH A 1 501 1001 HOH HOH . E 3 HOH A 2 502 1002 HOH HOH . E 3 HOH A 3 503 1003 HOH HOH . E 3 HOH A 4 504 1004 HOH HOH . E 3 HOH A 5 505 1005 HOH HOH . E 3 HOH A 6 506 1006 HOH HOH . E 3 HOH A 7 507 1007 HOH HOH . E 3 HOH A 8 508 1009 HOH HOH . E 3 HOH A 9 509 1010 HOH HOH . E 3 HOH A 10 510 1011 HOH HOH . E 3 HOH A 11 511 1012 HOH HOH . E 3 HOH A 12 512 1013 HOH HOH . E 3 HOH A 13 513 1014 HOH HOH . E 3 HOH A 14 514 1015 HOH HOH . E 3 HOH A 15 515 1016 HOH HOH . E 3 HOH A 16 516 1017 HOH HOH . E 3 HOH A 17 517 1018 HOH HOH . E 3 HOH A 18 518 1019 HOH HOH . E 3 HOH A 19 519 1020 HOH HOH . E 3 HOH A 20 520 1021 HOH HOH . E 3 HOH A 21 521 1023 HOH HOH . E 3 HOH A 22 522 1027 HOH HOH . E 3 HOH A 23 523 1028 HOH HOH . E 3 HOH A 24 524 1029 HOH HOH . E 3 HOH A 25 525 1030 HOH HOH . E 3 HOH A 26 526 1031 HOH HOH . E 3 HOH A 27 527 1034 HOH HOH . E 3 HOH A 28 528 1035 HOH HOH . E 3 HOH A 29 529 1037 HOH HOH . E 3 HOH A 30 530 1038 HOH HOH . E 3 HOH A 31 531 1040 HOH HOH . E 3 HOH A 32 532 1041 HOH HOH . E 3 HOH A 33 533 1042 HOH HOH . E 3 HOH A 34 534 1043 HOH HOH . E 3 HOH A 35 535 1044 HOH HOH . E 3 HOH A 36 536 1046 HOH HOH . E 3 HOH A 37 537 1047 HOH HOH . E 3 HOH A 38 538 1049 HOH HOH . E 3 HOH A 39 539 1052 HOH HOH . E 3 HOH A 40 540 1054 HOH HOH . E 3 HOH A 41 541 1060 HOH HOH . E 3 HOH A 42 542 1063 HOH HOH . E 3 HOH A 43 543 1064 HOH HOH . E 3 HOH A 44 544 1065 HOH HOH . E 3 HOH A 45 545 1067 HOH HOH . E 3 HOH A 46 546 1068 HOH HOH . E 3 HOH A 47 547 1070 HOH HOH . E 3 HOH A 48 548 1071 HOH HOH . E 3 HOH A 49 549 1072 HOH HOH . E 3 HOH A 50 550 1073 HOH HOH . E 3 HOH A 51 551 1080 HOH HOH . E 3 HOH A 52 552 1084 HOH HOH . E 3 HOH A 53 553 1089 HOH HOH . E 3 HOH A 54 554 1090 HOH HOH . E 3 HOH A 55 555 1095 HOH HOH . E 3 HOH A 56 556 2049 HOH HOH . E 3 HOH A 57 557 2054 HOH HOH . E 3 HOH A 58 558 3016 HOH HOH . E 3 HOH A 59 559 3017 HOH HOH . E 3 HOH A 60 560 3102 HOH HOH . E 3 HOH A 61 561 3107 HOH HOH . E 3 HOH A 62 562 3111 HOH HOH . E 3 HOH A 63 563 3118 HOH HOH . E 3 HOH A 64 564 3124 HOH HOH . E 3 HOH A 65 565 3127 HOH HOH . E 3 HOH A 66 566 3133 HOH HOH . E 3 HOH A 67 567 3602 HOH HOH . E 3 HOH A 68 568 3604 HOH HOH . E 3 HOH A 69 569 3627 HOH HOH . E 3 HOH A 70 570 3630 HOH HOH . E 3 HOH A 71 571 3631 HOH HOH . E 3 HOH A 72 572 3635 HOH HOH . E 3 HOH A 73 573 3636 HOH HOH . E 3 HOH A 74 574 3638 HOH HOH . E 3 HOH A 75 575 3641 HOH HOH . E 3 HOH A 76 576 3650 HOH HOH . E 3 HOH A 77 577 3672 HOH HOH . E 3 HOH A 78 578 3673 HOH HOH . E 3 HOH A 79 579 3522 HOH HOH . F 3 HOH B 1 501 1045 HOH HOH . F 3 HOH B 2 502 1055 HOH HOH . F 3 HOH B 3 503 1056 HOH HOH . F 3 HOH B 4 504 1057 HOH HOH . F 3 HOH B 5 505 2001 HOH HOH . F 3 HOH B 6 506 2002 HOH HOH . F 3 HOH B 7 507 2006 HOH HOH . F 3 HOH B 8 508 2007 HOH HOH . F 3 HOH B 9 509 2009 HOH HOH . F 3 HOH B 10 510 2013 HOH HOH . F 3 HOH B 11 511 2014 HOH HOH . F 3 HOH B 12 512 2015 HOH HOH . F 3 HOH B 13 513 2019 HOH HOH . F 3 HOH B 14 514 2020 HOH HOH . F 3 HOH B 15 515 2024 HOH HOH . F 3 HOH B 16 516 2031 HOH HOH . F 3 HOH B 17 517 2032 HOH HOH . F 3 HOH B 18 518 2033 HOH HOH . F 3 HOH B 19 519 2039 HOH HOH . F 3 HOH B 20 520 2040 HOH HOH . F 3 HOH B 21 521 2041 HOH HOH . F 3 HOH B 22 522 2044 HOH HOH . F 3 HOH B 23 523 2046 HOH HOH . F 3 HOH B 24 524 2051 HOH HOH . F 3 HOH B 25 525 2052 HOH HOH . F 3 HOH B 26 526 2053 HOH HOH . F 3 HOH B 27 527 2061 HOH HOH . F 3 HOH B 28 528 2062 HOH HOH . F 3 HOH B 29 529 2065 HOH HOH . F 3 HOH B 30 530 2071 HOH HOH . F 3 HOH B 31 531 2074 HOH HOH . F 3 HOH B 32 532 2079 HOH HOH . F 3 HOH B 33 533 2080 HOH HOH . F 3 HOH B 34 534 2093 HOH HOH . F 3 HOH B 35 535 2095 HOH HOH . F 3 HOH B 36 536 2097 HOH HOH . F 3 HOH B 37 537 2099 HOH HOH . F 3 HOH B 38 538 2100 HOH HOH . F 3 HOH B 39 539 2101 HOH HOH . F 3 HOH B 40 540 3005 HOH HOH . F 3 HOH B 41 541 3011 HOH HOH . F 3 HOH B 42 542 3018 HOH HOH . F 3 HOH B 43 543 3130 HOH HOH . F 3 HOH B 44 544 3134 HOH HOH . F 3 HOH B 45 545 3503 HOH HOH . F 3 HOH B 46 546 3504 HOH HOH . F 3 HOH B 47 547 3507 HOH HOH . F 3 HOH B 48 548 3511 HOH HOH . F 3 HOH B 49 549 3513 HOH HOH . F 3 HOH B 50 550 3519 HOH HOH . F 3 HOH B 51 551 3527 HOH HOH . F 3 HOH B 52 552 3528 HOH HOH . F 3 HOH B 53 553 3601 HOH HOH . F 3 HOH B 54 554 3605 HOH HOH . F 3 HOH B 55 555 3614 HOH HOH . F 3 HOH B 56 556 3615 HOH HOH . F 3 HOH B 57 557 3617 HOH HOH . F 3 HOH B 58 558 3622 HOH HOH . F 3 HOH B 59 559 3623 HOH HOH . F 3 HOH B 60 560 3624 HOH HOH . F 3 HOH B 61 561 3661 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 39.589 23.549 -7.378 1 18.23 ? N1 FMN 500 B 1 HETATM 2 C C2 FMN . . . D 2 39.714 22.235 -7.016 1 21.23 ? C2 FMN 500 B 1 HETATM 3 O O2 FMN . . . D 2 38.925 21.819 -6.148 1 18.34 ? O2 FMN 500 B 1 HETATM 4 N N3 FMN . . . D 2 40.748 21.444 -7.574 1 18.26 ? N3 FMN 500 B 1 HETATM 5 C C4 FMN . . . D 2 41.632 21.992 -8.504 1 20.33 ? C4 FMN 500 B 1 HETATM 6 O O4 FMN . . . D 2 42.527 21.252 -9.005 1 18.54 ? O4 FMN 500 B 1 HETATM 7 C C4A FMN . . . D 2 41.448 23.348 -8.884 1 19.76 ? C4A FMN 500 B 1 HETATM 8 N N5 FMN . . . D 2 42.24 23.993 -9.831 1 21.06 ? N5 FMN 500 B 1 HETATM 9 C C5A FMN . . . D 2 42.057 25.318 -10.15 1 19.08 ? C5A FMN 500 B 1 HETATM 10 C C6 FMN . . . D 2 42.893 25.919 -11.108 1 21.41 ? C6 FMN 500 B 1 HETATM 11 C C7 FMN . . . D 2 42.752 27.259 -11.49 1 20.19 ? C7 FMN 500 B 1 HETATM 12 C C7M FMN . . . D 2 43.625 27.814 -12.612 1 20.13 ? C7M FMN 500 B 1 HETATM 13 C C8 FMN . . . D 2 41.733 28.017 -10.916 1 19.67 ? C8 FMN 500 B 1 HETATM 14 C C8M FMN . . . D 2 41.471 29.426 -11.417 1 18.84 ? C8M FMN 500 B 1 HETATM 15 C C9 FMN . . . D 2 40.883 27.435 -9.962 1 20.18 ? C9 FMN 500 B 1 HETATM 16 C C9A FMN . . . D 2 41.04 26.07 -9.573 1 20.66 ? C9A FMN 500 B 1 HETATM 17 N N10 FMN . . . D 2 40.224 25.475 -8.633 1 17.72 ? N10 FMN 500 B 1 HETATM 18 C C10 FMN . . . D 2 40.415 24.12 -8.307 1 20.99 ? C10 FMN 500 B 1 HETATM 19 C C1' FMN . . . D 2 39.316 26.31 -7.758 1 18.51 ? C1' FMN 500 B 1 HETATM 20 C C2' FMN . . . D 2 37.83 26.223 -8.215 1 20.81 ? C2' FMN 500 B 1 HETATM 21 O O2' FMN . . . D 2 37.781 26.318 -9.588 1 16.8 ? O2' FMN 500 B 1 HETATM 22 C C3' FMN . . . D 2 36.996 27.412 -7.732 1 21.92 ? C3' FMN 500 B 1 HETATM 23 O O3' FMN . . . D 2 37.699 28.574 -8.073 1 19.97 ? O3' FMN 500 B 1 HETATM 24 C C4' FMN . . . D 2 36.895 27.35 -6.206 1 22.32 ? C4' FMN 500 B 1 HETATM 25 O O4' FMN . . . D 2 36.093 26.215 -5.928 1 22.06 ? O4' FMN 500 B 1 HETATM 26 C C5' FMN . . . D 2 36.361 28.675 -5.603 1 25.15 ? C5' FMN 500 B 1 HETATM 27 O O5' FMN . . . D 2 35.201 29.118 -6.289 1 27.16 ? O5' FMN 500 B 1 HETATM 28 P P FMN . . . D 2 33.697 28.675 -5.811 1 29.82 ? P FMN 500 B 1 HETATM 29 O O1P FMN . . . D 2 33.513 27.185 -6.05 1 27.5 ? O1P FMN 500 B 1 HETATM 30 O O2P FMN . . . D 2 32.777 29.42 -6.736 1 28.22 ? O2P FMN 500 B 1 HETATM 31 O O3P FMN . . . D 2 33.568 28.896 -4.347 1 26.28 ? O3P FMN 500 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 485 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #