data_2Z6D # _model_server_result.job_id AahZKQzH9Lkd4modYvA7Gw _model_server_result.datetime_utc '2024-12-21 16:17:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2Z6D # _exptl.entry_id 2Z6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.42 _cell.angle_gamma 90 _cell.entry_id 2Z6D _cell.length_a 32.52 _cell.length_b 66.51 _cell.length_c 56.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 2Z6D _atom_sites.fract_transf_matrix[1][1] 0.030748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001298 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 500 500 FMN FMN . D 2 FMN B 1 500 500 FMN FMN . E 3 HOH A 1 1001 1001 HOH HOH . E 3 HOH A 2 1002 1002 HOH HOH . E 3 HOH A 3 1003 1003 HOH HOH . E 3 HOH A 4 1004 1004 HOH HOH . E 3 HOH A 5 1005 1005 HOH HOH . E 3 HOH A 6 1009 1009 HOH HOH . E 3 HOH A 7 1010 1010 HOH HOH . E 3 HOH A 8 1011 1011 HOH HOH . E 3 HOH A 9 1012 1012 HOH HOH . E 3 HOH A 10 1013 1013 HOH HOH . E 3 HOH A 11 1014 1014 HOH HOH . E 3 HOH A 12 1015 1015 HOH HOH . E 3 HOH A 13 1016 1016 HOH HOH . E 3 HOH A 14 1017 1017 HOH HOH . E 3 HOH A 15 1019 1019 HOH HOH . E 3 HOH A 16 1020 1020 HOH HOH . E 3 HOH A 17 1021 1021 HOH HOH . E 3 HOH A 18 1022 1022 HOH HOH . E 3 HOH A 19 1024 1024 HOH HOH . E 3 HOH A 20 1025 1025 HOH HOH . E 3 HOH A 21 1026 1026 HOH HOH . E 3 HOH A 22 1027 1027 HOH HOH . E 3 HOH A 23 1028 1028 HOH HOH . E 3 HOH A 24 1031 1031 HOH HOH . E 3 HOH A 25 1033 1033 HOH HOH . E 3 HOH A 26 1034 1034 HOH HOH . E 3 HOH A 27 1035 1035 HOH HOH . E 3 HOH A 28 1036 1036 HOH HOH . E 3 HOH A 29 1037 1037 HOH HOH . E 3 HOH A 30 1038 1038 HOH HOH . E 3 HOH A 31 1039 1039 HOH HOH . E 3 HOH A 32 1040 1040 HOH HOH . E 3 HOH A 33 1041 1041 HOH HOH . E 3 HOH A 34 1042 1042 HOH HOH . E 3 HOH A 35 1043 1043 HOH HOH . E 3 HOH A 36 1046 1046 HOH HOH . E 3 HOH A 37 1047 1047 HOH HOH . E 3 HOH A 38 1048 1048 HOH HOH . E 3 HOH A 39 1049 1049 HOH HOH . E 3 HOH A 40 1050 1050 HOH HOH . E 3 HOH A 41 1051 1051 HOH HOH . E 3 HOH A 42 1052 1052 HOH HOH . E 3 HOH A 43 1055 1055 HOH HOH . E 3 HOH A 44 1056 1056 HOH HOH . E 3 HOH A 45 1059 1059 HOH HOH . E 3 HOH A 46 1060 1060 HOH HOH . E 3 HOH A 47 1063 1063 HOH HOH . E 3 HOH A 48 1064 1064 HOH HOH . E 3 HOH A 49 1065 1065 HOH HOH . E 3 HOH A 50 1070 1070 HOH HOH . E 3 HOH A 51 1074 1074 HOH HOH . E 3 HOH A 52 1075 1075 HOH HOH . E 3 HOH A 53 1106 1106 HOH HOH . E 3 HOH A 54 1107 1107 HOH HOH . E 3 HOH A 55 1110 1110 HOH HOH . E 3 HOH A 56 1111 1111 HOH HOH . E 3 HOH A 57 1114 1114 HOH HOH . E 3 HOH A 58 1115 1115 HOH HOH . E 3 HOH A 59 1119 1119 HOH HOH . E 3 HOH A 60 1120 1120 HOH HOH . E 3 HOH A 61 1122 1122 HOH HOH . E 3 HOH A 62 1123 1123 HOH HOH . E 3 HOH A 63 1201 1201 HOH HOH . E 3 HOH A 64 1202 1202 HOH HOH . E 3 HOH A 65 1203 1203 HOH HOH . E 3 HOH A 66 1210 1210 HOH HOH . E 3 HOH A 67 1211 1211 HOH HOH . E 3 HOH A 68 1214 1214 HOH HOH . E 3 HOH A 69 2054 2054 HOH HOH . E 3 HOH A 70 2300 2300 HOH HOH . E 3 HOH A 71 2303 2303 HOH HOH . E 3 HOH A 72 2304 2304 HOH HOH . E 3 HOH A 73 2305 2305 HOH HOH . E 3 HOH A 74 2306 2306 HOH HOH . E 3 HOH A 75 2320 2320 HOH HOH . E 3 HOH A 76 2322 2322 HOH HOH . E 3 HOH A 77 2323 2323 HOH HOH . E 3 HOH A 78 2330 2330 HOH HOH . E 3 HOH A 79 2331 2331 HOH HOH . E 3 HOH A 80 2332 2332 HOH HOH . E 3 HOH A 81 2333 2333 HOH HOH . F 3 HOH B 1 1053 1053 HOH HOH . F 3 HOH B 2 1062 1062 HOH HOH . F 3 HOH B 3 1071 1071 HOH HOH . F 3 HOH B 4 2001 2001 HOH HOH . F 3 HOH B 5 2002 2002 HOH HOH . F 3 HOH B 6 2005 2005 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2019 2019 HOH HOH . F 3 HOH B 17 2021 2021 HOH HOH . F 3 HOH B 18 2022 2022 HOH HOH . F 3 HOH B 19 2025 2025 HOH HOH . F 3 HOH B 20 2027 2027 HOH HOH . F 3 HOH B 21 2028 2028 HOH HOH . F 3 HOH B 22 2029 2029 HOH HOH . F 3 HOH B 23 2030 2030 HOH HOH . F 3 HOH B 24 2032 2032 HOH HOH . F 3 HOH B 25 2034 2034 HOH HOH . F 3 HOH B 26 2035 2035 HOH HOH . F 3 HOH B 27 2037 2037 HOH HOH . F 3 HOH B 28 2038 2038 HOH HOH . F 3 HOH B 29 2040 2040 HOH HOH . F 3 HOH B 30 2041 2041 HOH HOH . F 3 HOH B 31 2044 2044 HOH HOH . F 3 HOH B 32 2046 2046 HOH HOH . F 3 HOH B 33 2047 2047 HOH HOH . F 3 HOH B 34 2048 2048 HOH HOH . F 3 HOH B 35 2049 2049 HOH HOH . F 3 HOH B 36 2050 2050 HOH HOH . F 3 HOH B 37 2052 2052 HOH HOH . F 3 HOH B 38 2057 2057 HOH HOH . F 3 HOH B 39 2058 2058 HOH HOH . F 3 HOH B 40 2101 2101 HOH HOH . F 3 HOH B 41 2102 2102 HOH HOH . F 3 HOH B 42 2103 2103 HOH HOH . F 3 HOH B 43 2108 2108 HOH HOH . F 3 HOH B 44 2109 2109 HOH HOH . F 3 HOH B 45 2112 2112 HOH HOH . F 3 HOH B 46 2117 2117 HOH HOH . F 3 HOH B 47 2118 2118 HOH HOH . F 3 HOH B 48 2201 2201 HOH HOH . F 3 HOH B 49 2202 2202 HOH HOH . F 3 HOH B 50 2205 2205 HOH HOH . F 3 HOH B 51 2215 2215 HOH HOH . F 3 HOH B 52 2217 2217 HOH HOH . F 3 HOH B 53 2218 2218 HOH HOH . F 3 HOH B 54 2307 2307 HOH HOH . F 3 HOH B 55 2308 2308 HOH HOH . F 3 HOH B 56 2324 2324 HOH HOH . F 3 HOH B 57 2326 2326 HOH HOH . F 3 HOH B 58 2327 2327 HOH HOH . F 3 HOH B 59 2328 2328 HOH HOH . F 3 HOH B 60 2329 2329 HOH HOH . F 3 HOH B 61 2335 2335 HOH HOH . F 3 HOH B 62 2336 2336 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 -8.536 -53.942 12.237 1 12.34 ? N1 FMN 500 A 1 HETATM 2 C C2 FMN . . . C 2 -9.315 -54.337 11.174 1 13.35 ? C2 FMN 500 A 1 HETATM 3 O O2 FMN . . . C 2 -8.86 -55.149 10.395 1 13.73 ? O2 FMN 500 A 1 HETATM 4 N N3 FMN . . . C 2 -10.592 -53.833 11.012 1 13.06 ? N3 FMN 500 A 1 HETATM 5 C C4 FMN . . . C 2 -11.118 -52.928 11.949 1 13.97 ? C4 FMN 500 A 1 HETATM 6 O O4 FMN . . . C 2 -12.261 -52.41 11.796 1 12.84 ? O4 FMN 500 A 1 HETATM 7 C C4A FMN . . . C 2 -10.303 -52.511 13.009 1 13.47 ? C4A FMN 500 A 1 HETATM 8 N N5 FMN . . . C 2 -10.767 -51.594 13.943 1 10.82 ? N5 FMN 500 A 1 HETATM 9 C C5A FMN . . . C 2 -9.983 -51.222 14.989 1 12.1 ? C5A FMN 500 A 1 HETATM 10 C C6 FMN . . . C 2 -10.481 -50.318 15.929 1 11.61 ? C6 FMN 500 A 1 HETATM 11 C C7 FMN . . . C 2 -9.69 -49.887 16.985 1 12.83 ? C7 FMN 500 A 1 HETATM 12 C C7M FMN . . . C 2 -10.305 -49.007 18.069 1 8.23 ? C7M FMN 500 A 1 HETATM 13 C C8 FMN . . . C 2 -8.371 -50.39 17.128 1 12.72 ? C8 FMN 500 A 1 HETATM 14 C C8M FMN . . . C 2 -7.449 -49.911 18.258 1 12.37 ? C8M FMN 500 A 1 HETATM 15 C C9 FMN . . . C 2 -7.885 -51.293 16.191 1 12.73 ? C9 FMN 500 A 1 HETATM 16 C C9A FMN . . . C 2 -8.676 -51.695 15.099 1 12.42 ? C9A FMN 500 A 1 HETATM 17 N N10 FMN . . . C 2 -8.201 -52.613 14.195 1 14.54 ? N10 FMN 500 A 1 HETATM 18 C C10 FMN . . . C 2 -9.015 -53.023 13.142 1 13.51 ? C10 FMN 500 A 1 HETATM 19 C C1' FMN . . . C 2 -6.732 -52.935 14.11 1 10.86 ? C1' FMN 500 A 1 HETATM 20 C C2' FMN . . . C 2 -6.426 -54.239 14.83 1 12.46 ? C2' FMN 500 A 1 HETATM 21 O O2' FMN . . . C 2 -7.12 -54.282 16.06 1 11.65 ? O2' FMN 500 A 1 HETATM 22 C C3' FMN . . . C 2 -4.919 -54.366 15.133 1 13.75 ? C3' FMN 500 A 1 HETATM 23 O O3' FMN . . . C 2 -4.538 -53.212 15.851 1 12.4 ? O3' FMN 500 A 1 HETATM 24 C C4' FMN . . . C 2 -4.101 -54.572 13.848 1 13.88 ? C4' FMN 500 A 1 HETATM 25 O O4' FMN . . . C 2 -4.461 -55.828 13.29 1 16.42 ? O4' FMN 500 A 1 HETATM 26 C C5' FMN . . . C 2 -2.575 -54.457 14.013 1 15.6 ? C5' FMN 500 A 1 HETATM 27 O O5' FMN . . . C 2 -2.052 -55.204 15.101 1 18.48 ? O5' FMN 500 A 1 HETATM 28 P P FMN . . . C 2 -1.68 -56.793 14.941 1 19.98 ? P FMN 500 A 1 HETATM 29 O O1P FMN . . . C 2 -2.915 -57.596 14.521 1 18.31 ? O1P FMN 500 A 1 HETATM 30 O O2P FMN . . . C 2 -1.191 -57.237 16.305 1 18.03 ? O2P FMN 500 A 1 HETATM 31 O O3P FMN . . . C 2 -0.703 -57.02 13.814 1 16.44 ? O3P FMN 500 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #