data_2Z6J
#
_model_server_result.job_id            xXuT17zJycaDsDweTntSwg 
_model_server_result.datetime_utc      '2024-10-10 05:24:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2z6j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":701}' 
#
_entry.id    2Z6J 
#
_exptl.entry_id    2Z6J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.04 
_cell.angle_gamma         90 
_cell.entry_id            2Z6J 
_cell.length_a            50.63 
_cell.length_b            126.485 
_cell.length_c            53.522 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Z6J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 158 A ALA 158 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc2 A O ILE 161 A ILE 161 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc3 A OD1 ASN 201 A ASN 201 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc4 B O ALA 158 B ALA 158 1_555 I CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc5 B O ILE 161 B ILE 161 1_555 I CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc6 B OD1 ASN 201 B ASN 201 1_555 H CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 278 n n 
C1 H11 MPD sing 279 n n 
C1 H12 MPD sing 280 n n 
C1 H13 MPD sing 281 n n 
C2 O2 MPD sing 282 n n 
C2 CM MPD sing 283 n n 
C2 C3 MPD sing 284 n n 
O2 HO2 MPD sing 285 n n 
CM HM1 MPD sing 286 n n 
CM HM2 MPD sing 287 n n 
CM HM3 MPD sing 288 n n 
C3 C4 MPD sing 289 n n 
C3 H31 MPD sing 290 n n 
C3 H32 MPD sing 291 n n 
C4 O4 MPD sing 292 n n 
C4 C5 MPD sing 293 n n 
C4 H4 MPD sing 294 n n 
O4 HO4 MPD sing 295 n n 
C5 H51 MPD sing 296 n n 
C5 H52 MPD sing 297 n n 
C5 H53 MPD sing 298 n n 
#
_atom_sites.entry_id                     2Z6J 
_atom_sites.fract_transf_matrix[1][1]    0.019751 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007994 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007906 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020156 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 602 602 CA CA . 
D 2 CA A 1 603 603 CA CA . 
E 3 FMN A 1 401 401 FMN FMN . 
F 4 TUI A 1 501 501 TUI TUI . 
G 5 MPD A 1 701 701 MPD MPD . 
H 2 CA B 1 601 601 CA CA . 
I 2 CA B 1 604 604 CA CA . 
J 3 FMN B 1 402 402 FMN FMN . 
K 4 TUI B 1 502 502 TUI TUI . 
L 6 HOH A 1 702 1 HOH HOH . 
L 6 HOH A 2 703 3 HOH HOH . 
L 6 HOH A 3 704 4 HOH HOH . 
L 6 HOH A 4 705 6 HOH HOH . 
L 6 HOH A 5 706 8 HOH HOH . 
L 6 HOH A 6 707 9 HOH HOH . 
L 6 HOH A 7 708 10 HOH HOH . 
L 6 HOH A 8 709 12 HOH HOH . 
L 6 HOH A 9 710 13 HOH HOH . 
L 6 HOH A 10 711 14 HOH HOH . 
L 6 HOH A 11 712 15 HOH HOH . 
L 6 HOH A 12 713 20 HOH HOH . 
L 6 HOH A 13 714 23 HOH HOH . 
L 6 HOH A 14 715 25 HOH HOH . 
L 6 HOH A 15 716 26 HOH HOH . 
L 6 HOH A 16 717 27 HOH HOH . 
L 6 HOH A 17 718 28 HOH HOH . 
L 6 HOH A 18 719 31 HOH HOH . 
L 6 HOH A 19 720 32 HOH HOH . 
L 6 HOH A 20 721 33 HOH HOH . 
L 6 HOH A 21 722 35 HOH HOH . 
L 6 HOH A 22 723 36 HOH HOH . 
L 6 HOH A 23 724 37 HOH HOH . 
L 6 HOH A 24 725 38 HOH HOH . 
L 6 HOH A 25 726 40 HOH HOH . 
L 6 HOH A 26 727 42 HOH HOH . 
L 6 HOH A 27 728 43 HOH HOH . 
L 6 HOH A 28 729 45 HOH HOH . 
L 6 HOH A 29 730 49 HOH HOH . 
L 6 HOH A 30 731 52 HOH HOH . 
L 6 HOH A 31 732 55 HOH HOH . 
L 6 HOH A 32 733 56 HOH HOH . 
L 6 HOH A 33 734 59 HOH HOH . 
L 6 HOH A 34 735 60 HOH HOH . 
L 6 HOH A 35 736 61 HOH HOH . 
L 6 HOH A 36 737 62 HOH HOH . 
L 6 HOH A 37 738 65 HOH HOH . 
L 6 HOH A 38 739 69 HOH HOH . 
L 6 HOH A 39 740 70 HOH HOH . 
L 6 HOH A 40 741 71 HOH HOH . 
L 6 HOH A 41 742 72 HOH HOH . 
M 6 HOH B 1 605 2 HOH HOH . 
M 6 HOH B 2 606 5 HOH HOH . 
M 6 HOH B 3 607 7 HOH HOH . 
M 6 HOH B 4 608 11 HOH HOH . 
M 6 HOH B 5 609 16 HOH HOH . 
M 6 HOH B 6 610 17 HOH HOH . 
M 6 HOH B 7 611 18 HOH HOH . 
M 6 HOH B 8 612 19 HOH HOH . 
M 6 HOH B 9 613 21 HOH HOH . 
M 6 HOH B 10 614 22 HOH HOH . 
M 6 HOH B 11 615 24 HOH HOH . 
M 6 HOH B 12 616 29 HOH HOH . 
M 6 HOH B 13 617 30 HOH HOH . 
M 6 HOH B 14 618 34 HOH HOH . 
M 6 HOH B 15 619 39 HOH HOH . 
M 6 HOH B 16 620 41 HOH HOH . 
M 6 HOH B 17 621 44 HOH HOH . 
M 6 HOH B 18 622 46 HOH HOH . 
M 6 HOH B 19 623 47 HOH HOH . 
M 6 HOH B 20 624 48 HOH HOH . 
M 6 HOH B 21 625 50 HOH HOH . 
M 6 HOH B 22 626 51 HOH HOH . 
M 6 HOH B 23 627 53 HOH HOH . 
M 6 HOH B 24 628 54 HOH HOH . 
M 6 HOH B 25 629 57 HOH HOH . 
M 6 HOH B 26 630 58 HOH HOH . 
M 6 HOH B 27 631 63 HOH HOH . 
M 6 HOH B 28 632 64 HOH HOH . 
M 6 HOH B 29 633 66 HOH HOH . 
M 6 HOH B 30 634 67 HOH HOH . 
M 6 HOH B 31 635 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . G 5 31.609 3.276 14.395 1 39.22 ? C1 MPD 701 A 1 
HETATM 2 C C2 MPD . . . G 5 31.566 2.469 15.688 1 39.4 ? C2 MPD 701 A 1 
HETATM 3 O O2 MPD . . . G 5 32.88 2.46 16.313 1 39.25 ? O2 MPD 701 A 1 
HETATM 4 C CM MPD . . . G 5 30.62 3.181 16.641 1 39.09 ? CM MPD 701 A 1 
HETATM 5 C C3 MPD . . . G 5 31.133 1.015 15.446 1 39.31 ? C3 MPD 701 A 1 
HETATM 6 C C4 MPD . . . G 5 30.578 0.751 14.041 1 39.34 ? C4 MPD 701 A 1 
HETATM 7 O O4 MPD . . . G 5 31.615 0.377 13.152 1 39.07 ? O4 MPD 701 A 1 
HETATM 8 C C5 MPD . . . G 5 29.495 -0.321 14.064 1 39.24 ? C5 MPD 701 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#