data_2Z6Q # _model_server_result.job_id Oe0W3ZUmdzQx9fqzrH3kLQ _model_server_result.datetime_utc '2024-10-19 11:29:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z6q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":328}' # _entry.id 2Z6Q # _exptl.entry_id 2Z6Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Z6Q _cell.length_a 92.924 _cell.length_b 92.924 _cell.length_c 315.781 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z6Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DG 6 D DG 426 1_555 E O5' DCZ . A DCZ 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 C DG 402 1_555 C N3 DC 6 E DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 C DG 402 1_555 C O2 DC 6 E DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 C DG 402 1_555 C N4 DC 6 E DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 C DA 403 1_555 C N3 DT 5 E DT 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 C DA 403 1_555 C O4 DT 5 E DT 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 3 C DT 404 1_555 C N1 DA 4 E DA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 3 C DT 404 1_555 C N6 DA 4 E DA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DA 4 C DA 405 1_555 C N3 DT 3 E DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N6 DA 4 C DA 405 1_555 C O4 DT 3 E DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 5 C DG 406 1_555 C N3 DC 2 E DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 5 C DG 406 1_555 C O2 DC 2 E DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 5 C DG 406 1_555 C N4 DC 2 E DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 6 C DC 407 1_555 C N1 DG 1 E DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 6 C DC 407 1_555 C O6 DG 1 E DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 6 C DC 407 1_555 C N2 DG 1 E DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 8 C DC 409 1_555 B N1 DG 6 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 8 C DC 409 1_555 B O6 DG 6 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 8 C DC 409 1_555 B N2 DG 6 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 9 C DT 410 1_555 B N1 DA 5 D DA 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 9 C DT 410 1_555 B N6 DA 5 D DA 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DA 10 C DA 411 1_555 B N3 DT 4 D DT 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N6 DA 10 C DA 411 1_555 B O4 DT 4 D DT 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DT 11 C DT 412 1_555 B N1 DA 3 D DA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O4 DT 11 C DT 412 1_555 B N6 DA 3 D DA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 12 C DC 413 1_555 B N1 DG 2 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 12 C DC 413 1_555 B O6 DG 2 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 12 C DC 413 1_555 B N2 DG 2 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 456 n n N HN1 SAH sing 457 n n N HN2 SAH sing 458 n n CA CB SAH sing 459 n n CA C SAH sing 460 n n CA HA SAH sing 461 n n CB CG SAH sing 462 n n CB HB1 SAH sing 463 n n CB HB2 SAH sing 464 n n CG SD SAH sing 465 n n CG HG1 SAH sing 466 n n CG HG2 SAH sing 467 n n SD C5' SAH sing 468 n n C O SAH doub 469 n n C OXT SAH sing 470 n n OXT HXT SAH sing 471 n n C5' C4' SAH sing 472 n n C5' "H5'1" SAH sing 473 n n C5' "H5'2" SAH sing 474 n n C4' O4' SAH sing 475 n n C4' C3' SAH sing 476 n n C4' H4' SAH sing 477 n n O4' C1' SAH sing 478 n n C3' O3' SAH sing 479 n n C3' C2' SAH sing 480 n n C3' H3' SAH sing 481 n n O3' HO3' SAH sing 482 n n C2' O2' SAH sing 483 n n C2' C1' SAH sing 484 n n C2' H2' SAH sing 485 n n O2' HO2' SAH sing 486 n n C1' N9 SAH sing 487 n n C1' H1' SAH sing 488 n n N9 C8 SAH sing 489 n y N9 C4 SAH sing 490 n y C8 N7 SAH doub 491 n y C8 H8 SAH sing 492 n n N7 C5 SAH sing 493 n y C5 C6 SAH sing 494 n y C5 C4 SAH doub 495 n y C6 N6 SAH sing 496 n n C6 N1 SAH doub 497 n y N6 HN61 SAH sing 498 n n N6 HN62 SAH sing 499 n n N1 C2 SAH sing 500 n y C2 N3 SAH doub 501 n y C2 H2 SAH sing 502 n n N3 C4 SAH sing 503 n y # _atom_sites.entry_id 2Z6Q _atom_sites.fract_transf_matrix[1][1] 0.010761 _atom_sites.fract_transf_matrix[1][2] 0.006213 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 DCZ A 1 427 427 DCZ CYT . F 6 SAH A 1 328 328 SAH SAH . G 7 HOH C 1 335 335 HOH HOH . G 7 HOH C 2 359 359 HOH HOH . G 7 HOH C 3 368 368 HOH HOH . G 7 HOH C 4 389 389 HOH HOH . G 7 HOH C 5 395 395 HOH HOH . H 7 HOH E 1 334 334 HOH HOH . H 7 HOH E 2 347 347 HOH HOH . H 7 HOH E 3 399 399 HOH HOH . I 7 HOH A 1 329 329 HOH HOH . I 7 HOH A 2 330 330 HOH HOH . I 7 HOH A 3 331 331 HOH HOH . I 7 HOH A 4 332 332 HOH HOH . I 7 HOH A 5 333 333 HOH HOH . I 7 HOH A 6 336 336 HOH HOH . I 7 HOH A 7 337 337 HOH HOH . I 7 HOH A 8 338 338 HOH HOH . I 7 HOH A 9 339 339 HOH HOH . I 7 HOH A 10 340 340 HOH HOH . I 7 HOH A 11 341 341 HOH HOH . I 7 HOH A 12 342 342 HOH HOH . I 7 HOH A 13 343 343 HOH HOH . I 7 HOH A 14 344 344 HOH HOH . I 7 HOH A 15 345 345 HOH HOH . I 7 HOH A 16 346 346 HOH HOH . I 7 HOH A 17 348 348 HOH HOH . I 7 HOH A 18 349 349 HOH HOH . I 7 HOH A 19 350 350 HOH HOH . I 7 HOH A 20 351 351 HOH HOH . I 7 HOH A 21 352 352 HOH HOH . I 7 HOH A 22 353 353 HOH HOH . I 7 HOH A 23 354 354 HOH HOH . I 7 HOH A 24 355 355 HOH HOH . I 7 HOH A 25 356 356 HOH HOH . I 7 HOH A 26 357 357 HOH HOH . I 7 HOH A 27 358 358 HOH HOH . I 7 HOH A 28 360 360 HOH HOH . I 7 HOH A 29 361 361 HOH HOH . I 7 HOH A 30 362 362 HOH HOH . I 7 HOH A 31 363 363 HOH HOH . I 7 HOH A 32 364 364 HOH HOH . I 7 HOH A 33 365 365 HOH HOH . I 7 HOH A 34 366 366 HOH HOH . I 7 HOH A 35 367 367 HOH HOH . I 7 HOH A 36 369 369 HOH HOH . I 7 HOH A 37 370 370 HOH HOH . I 7 HOH A 38 371 371 HOH HOH . I 7 HOH A 39 372 372 HOH HOH . I 7 HOH A 40 373 373 HOH HOH . I 7 HOH A 41 374 374 HOH HOH . I 7 HOH A 42 375 375 HOH HOH . I 7 HOH A 43 376 376 HOH HOH . I 7 HOH A 44 377 377 HOH HOH . I 7 HOH A 45 378 378 HOH HOH . I 7 HOH A 46 379 379 HOH HOH . I 7 HOH A 47 380 380 HOH HOH . I 7 HOH A 48 381 381 HOH HOH . I 7 HOH A 49 382 382 HOH HOH . I 7 HOH A 50 383 383 HOH HOH . I 7 HOH A 51 384 384 HOH HOH . I 7 HOH A 52 385 385 HOH HOH . I 7 HOH A 53 386 386 HOH HOH . I 7 HOH A 54 387 387 HOH HOH . I 7 HOH A 55 388 388 HOH HOH . I 7 HOH A 56 390 390 HOH HOH . I 7 HOH A 57 391 391 HOH HOH . I 7 HOH A 58 392 392 HOH HOH . I 7 HOH A 59 393 393 HOH HOH . I 7 HOH A 60 394 394 HOH HOH . I 7 HOH A 61 396 396 HOH HOH . I 7 HOH A 62 397 397 HOH HOH . I 7 HOH A 63 398 398 HOH HOH . I 7 HOH A 64 400 400 HOH HOH . I 7 HOH A 65 401 401 HOH HOH . I 7 HOH A 66 402 402 HOH HOH . I 7 HOH A 67 403 403 HOH HOH . I 7 HOH A 68 404 404 HOH HOH . I 7 HOH A 69 405 405 HOH HOH . I 7 HOH A 70 406 406 HOH HOH . I 7 HOH A 71 407 407 HOH HOH . I 7 HOH A 72 408 408 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . F 6 -16.571 28.357 79.676 1 26.88 ? N SAH 328 A 1 HETATM 2 C CA SAH . . . F 6 -17.37 28.308 80.975 1 26.18 ? CA SAH 328 A 1 HETATM 3 C CB SAH . . . F 6 -17.169 29.369 81.987 1 26.48 ? CB SAH 328 A 1 HETATM 4 C CG SAH . . . F 6 -15.781 29.65 82.489 1 28.48 ? CG SAH 328 A 1 HETATM 5 S SD SAH . . . F 6 -15.912 29.883 84.293 1 27.76 ? SD SAH 328 A 1 HETATM 6 C C SAH . . . F 6 -18.9 28.218 80.588 1 25.94 ? C SAH 328 A 1 HETATM 7 O O SAH . . . F 6 -19.226 28.198 79.393 1 25.3 ? O SAH 328 A 1 HETATM 8 O OXT SAH . . . F 6 -19.723 28.171 81.576 1 25.4 ? OXT SAH 328 A 1 HETATM 9 C C5' SAH . . . F 6 -14.305 29.468 84.79 1 26.22 ? C5' SAH 328 A 1 HETATM 10 C C4' SAH . . . F 6 -14.327 27.998 85.377 1 27.1 ? C4' SAH 328 A 1 HETATM 11 O O4' SAH . . . F 6 -12.989 27.79 85.777 1 27.42 ? O4' SAH 328 A 1 HETATM 12 C C3' SAH . . . F 6 -15.133 27.812 86.634 1 27.1 ? C3' SAH 328 A 1 HETATM 13 O O3' SAH . . . F 6 -16.256 26.978 86.395 1 28.91 ? O3' SAH 328 A 1 HETATM 14 C C2' SAH . . . F 6 -14.065 27.236 87.644 1 26.73 ? C2' SAH 328 A 1 HETATM 15 O O2' SAH . . . F 6 -14.605 26.304 88.556 1 26.15 ? O2' SAH 328 A 1 HETATM 16 C C1' SAH . . . F 6 -13.006 26.673 86.708 1 25.73 ? C1' SAH 328 A 1 HETATM 17 N N9 SAH . . . F 6 -11.788 26.518 87.214 1 25.13 ? N9 SAH 328 A 1 HETATM 18 C C8 SAH . . . F 6 -10.964 27.348 87.936 1 22.97 ? C8 SAH 328 A 1 HETATM 19 N N7 SAH . . . F 6 -9.83 26.843 88.263 1 23.76 ? N7 SAH 328 A 1 HETATM 20 C C5 SAH . . . F 6 -9.855 25.541 87.727 1 24.52 ? C5 SAH 328 A 1 HETATM 21 C C6 SAH . . . F 6 -8.882 24.487 87.765 1 26.42 ? C6 SAH 328 A 1 HETATM 22 N N6 SAH . . . F 6 -7.689 24.595 88.377 1 26.22 ? N6 SAH 328 A 1 HETATM 23 N N1 SAH . . . F 6 -9.263 23.331 87.117 1 25.74 ? N1 SAH 328 A 1 HETATM 24 C C2 SAH . . . F 6 -10.463 23.188 86.491 1 26.62 ? C2 SAH 328 A 1 HETATM 25 N N3 SAH . . . F 6 -11.425 24.18 86.439 1 26.51 ? N3 SAH 328 A 1 HETATM 26 C C4 SAH . . . F 6 -11.047 25.322 87.078 1 25.68 ? C4 SAH 328 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #