data_2Z6U # _model_server_result.job_id Y8GjKUppV1txCuz-Ig-Stw _model_server_result.datetime_utc '2024-10-12 19:22:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z6u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":328}' # _entry.id 2Z6U # _exptl.entry_id 2Z6U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Z6U _cell.length_a 98.41 _cell.length_b 98.41 _cell.length_c 322.31 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z6U _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DG 1 C DG 402 1_555 B N3 DC 13 D DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 C DG 402 1_555 B O2 DC 13 D DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 C DG 402 1_555 B N4 DC 13 D DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 C DA 403 1_555 B N3 DT 12 D DT 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 C DA 403 1_555 B O4 DT 12 D DT 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 3 C DT 404 1_555 B N1 DA 11 D DA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 3 C DT 404 1_555 B N6 DA 11 D DA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DA 4 C DA 405 1_555 B N3 DT 10 D DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N6 DA 4 C DA 405 1_555 B O4 DT 10 D DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 5 C DG 406 1_555 B N3 DC 9 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 5 C DG 406 1_555 B O2 DC 9 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 5 C DG 406 1_555 B N4 DC 9 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 6 C DC 407 1_555 B N1 DG 8 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 6 C DC 407 1_555 B O6 DG 8 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 6 C DC 407 1_555 B N2 DG 8 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 8 C DC 409 1_555 B N1 DG 6 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 8 C DC 409 1_555 B O6 DG 6 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 8 C DC 409 1_555 B N2 DG 6 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 9 C DT 410 1_555 B N1 DA 5 D DA 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 9 C DT 410 1_555 B N6 DA 5 D DA 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DA 10 C DA 411 1_555 B N3 DT 4 D DT 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N6 DA 10 C DA 411 1_555 B O4 DT 4 D DT 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DT 11 C DT 412 1_555 B N1 DA 3 D DA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O4 DT 11 C DT 412 1_555 B N6 DA 3 D DA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 12 C DC 413 1_555 B N1 DG 2 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 12 C DC 413 1_555 B O6 DG 2 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 12 C DC 413 1_555 B N2 DG 2 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 426 n n N HN1 SAH sing 427 n n N HN2 SAH sing 428 n n CA CB SAH sing 429 n n CA C SAH sing 430 n n CA HA SAH sing 431 n n CB CG SAH sing 432 n n CB HB1 SAH sing 433 n n CB HB2 SAH sing 434 n n CG SD SAH sing 435 n n CG HG1 SAH sing 436 n n CG HG2 SAH sing 437 n n SD C5' SAH sing 438 n n C O SAH doub 439 n n C OXT SAH sing 440 n n OXT HXT SAH sing 441 n n C5' C4' SAH sing 442 n n C5' "H5'1" SAH sing 443 n n C5' "H5'2" SAH sing 444 n n C4' O4' SAH sing 445 n n C4' C3' SAH sing 446 n n C4' H4' SAH sing 447 n n O4' C1' SAH sing 448 n n C3' O3' SAH sing 449 n n C3' C2' SAH sing 450 n n C3' H3' SAH sing 451 n n O3' HO3' SAH sing 452 n n C2' O2' SAH sing 453 n n C2' C1' SAH sing 454 n n C2' H2' SAH sing 455 n n O2' HO2' SAH sing 456 n n C1' N9 SAH sing 457 n n C1' H1' SAH sing 458 n n N9 C8 SAH sing 459 n y N9 C4 SAH sing 460 n y C8 N7 SAH doub 461 n y C8 H8 SAH sing 462 n n N7 C5 SAH sing 463 n y C5 C6 SAH sing 464 n y C5 C4 SAH doub 465 n y C6 N6 SAH sing 466 n n C6 N1 SAH doub 467 n y N6 HN61 SAH sing 468 n n N6 HN62 SAH sing 469 n n N1 C2 SAH sing 470 n y C2 N3 SAH doub 471 n y C2 H2 SAH sing 472 n n N3 C4 SAH sing 473 n y # _atom_sites.entry_id 2Z6U _atom_sites.fract_transf_matrix[1][1] 0.010162 _atom_sites.fract_transf_matrix[1][2] 0.005867 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SAH A 1 328 328 SAH SAH . E 5 HOH C 1 526 526 HOH HOH . E 5 HOH C 2 532 532 HOH HOH . E 5 HOH C 3 546 546 HOH HOH . E 5 HOH C 4 547 547 HOH HOH . E 5 HOH C 5 554 554 HOH HOH . E 5 HOH C 6 559 559 HOH HOH . E 5 HOH C 7 563 563 HOH HOH . E 5 HOH C 8 567 567 HOH HOH . E 5 HOH C 9 579 579 HOH HOH . E 5 HOH C 10 590 590 HOH HOH . E 5 HOH C 11 595 595 HOH HOH . E 5 HOH C 12 600 600 HOH HOH . F 5 HOH D 1 528 528 HOH HOH . F 5 HOH D 2 537 537 HOH HOH . F 5 HOH D 3 541 541 HOH HOH . F 5 HOH D 4 544 544 HOH HOH . F 5 HOH D 5 561 561 HOH HOH . F 5 HOH D 6 569 569 HOH HOH . F 5 HOH D 7 577 577 HOH HOH . F 5 HOH D 8 578 578 HOH HOH . F 5 HOH D 9 586 586 HOH HOH . F 5 HOH D 10 597 597 HOH HOH . G 5 HOH A 1 501 501 HOH HOH . G 5 HOH A 2 502 502 HOH HOH . G 5 HOH A 3 503 503 HOH HOH . G 5 HOH A 4 504 504 HOH HOH . G 5 HOH A 5 505 505 HOH HOH . G 5 HOH A 6 506 506 HOH HOH . G 5 HOH A 7 507 507 HOH HOH . G 5 HOH A 8 508 508 HOH HOH . G 5 HOH A 9 509 509 HOH HOH . G 5 HOH A 10 510 510 HOH HOH . G 5 HOH A 11 511 511 HOH HOH . G 5 HOH A 12 512 512 HOH HOH . G 5 HOH A 13 513 513 HOH HOH . G 5 HOH A 14 514 514 HOH HOH . G 5 HOH A 15 515 515 HOH HOH . G 5 HOH A 16 516 516 HOH HOH . G 5 HOH A 17 517 517 HOH HOH . G 5 HOH A 18 518 518 HOH HOH . G 5 HOH A 19 519 519 HOH HOH . G 5 HOH A 20 520 520 HOH HOH . G 5 HOH A 21 521 521 HOH HOH . G 5 HOH A 22 522 522 HOH HOH . G 5 HOH A 23 523 523 HOH HOH . G 5 HOH A 24 524 524 HOH HOH . G 5 HOH A 25 527 527 HOH HOH . G 5 HOH A 26 529 529 HOH HOH . G 5 HOH A 27 530 530 HOH HOH . G 5 HOH A 28 531 531 HOH HOH . G 5 HOH A 29 533 533 HOH HOH . G 5 HOH A 30 534 534 HOH HOH . G 5 HOH A 31 535 535 HOH HOH . G 5 HOH A 32 536 536 HOH HOH . G 5 HOH A 33 538 538 HOH HOH . G 5 HOH A 34 539 539 HOH HOH . G 5 HOH A 35 540 540 HOH HOH . G 5 HOH A 36 542 542 HOH HOH . G 5 HOH A 37 543 543 HOH HOH . G 5 HOH A 38 545 545 HOH HOH . G 5 HOH A 39 548 548 HOH HOH . G 5 HOH A 40 549 549 HOH HOH . G 5 HOH A 41 550 550 HOH HOH . G 5 HOH A 42 551 551 HOH HOH . G 5 HOH A 43 552 552 HOH HOH . G 5 HOH A 44 553 553 HOH HOH . G 5 HOH A 45 555 555 HOH HOH . G 5 HOH A 46 556 556 HOH HOH . G 5 HOH A 47 557 557 HOH HOH . G 5 HOH A 48 558 558 HOH HOH . G 5 HOH A 49 560 560 HOH HOH . G 5 HOH A 50 562 562 HOH HOH . G 5 HOH A 51 564 564 HOH HOH . G 5 HOH A 52 565 565 HOH HOH . G 5 HOH A 53 566 566 HOH HOH . G 5 HOH A 54 568 568 HOH HOH . G 5 HOH A 55 570 570 HOH HOH . G 5 HOH A 56 571 571 HOH HOH . G 5 HOH A 57 572 572 HOH HOH . G 5 HOH A 58 573 573 HOH HOH . G 5 HOH A 59 574 574 HOH HOH . G 5 HOH A 60 576 576 HOH HOH . G 5 HOH A 61 580 580 HOH HOH . G 5 HOH A 62 581 581 HOH HOH . G 5 HOH A 63 582 582 HOH HOH . G 5 HOH A 64 584 584 HOH HOH . G 5 HOH A 65 585 585 HOH HOH . G 5 HOH A 66 588 588 HOH HOH . G 5 HOH A 67 591 591 HOH HOH . G 5 HOH A 68 592 592 HOH HOH . G 5 HOH A 69 593 593 HOH HOH . G 5 HOH A 70 594 594 HOH HOH . G 5 HOH A 71 596 596 HOH HOH . G 5 HOH A 72 598 598 HOH HOH . G 5 HOH A 73 599 599 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 4 -18.363 31.072 80.2 1 21.6 ? N SAH 328 A 1 HETATM 2 C CA SAH . . . D 4 -19.016 30.406 81.411 1 21.4 ? CA SAH 328 A 1 HETATM 3 C CB SAH . . . D 4 -18.917 31.043 82.755 1 19.64 ? CB SAH 328 A 1 HETATM 4 C CG SAH . . . D 4 -17.541 31.37 83.289 1 21.86 ? CG SAH 328 A 1 HETATM 5 S SD SAH . . . D 4 -17.715 31.804 85.058 1 23.92 ? SD SAH 328 A 1 HETATM 6 C C SAH . . . D 4 -20.52 30.136 81.004 1 21.76 ? C SAH 328 A 1 HETATM 7 O O SAH . . . D 4 -20.911 30.453 79.875 1 23.57 ? O SAH 328 A 1 HETATM 8 O OXT SAH . . . D 4 -21.255 29.584 81.895 1 22.46 ? OXT SAH 328 A 1 HETATM 9 C C5' SAH . . . D 4 -16.207 31.273 85.706 1 22.41 ? C5' SAH 328 A 1 HETATM 10 C C4' SAH . . . D 4 -16.319 29.738 86.104 1 23.13 ? C4' SAH 328 A 1 HETATM 11 O O4' SAH . . . D 4 -15.041 29.476 86.622 1 24.93 ? O4' SAH 328 A 1 HETATM 12 C C3' SAH . . . D 4 -17.254 29.399 87.234 1 23.14 ? C3' SAH 328 A 1 HETATM 13 O O3' SAH . . . D 4 -18.298 28.552 86.778 1 22.03 ? O3' SAH 328 A 1 HETATM 14 C C2' SAH . . . D 4 -16.288 28.743 88.296 1 24.53 ? C2' SAH 328 A 1 HETATM 15 O O2' SAH . . . D 4 -16.922 27.724 89.05 1 25.12 ? O2' SAH 328 A 1 HETATM 16 C C1' SAH . . . D 4 -15.129 28.272 87.427 1 24.46 ? C1' SAH 328 A 1 HETATM 17 N N9 SAH . . . D 4 -13.935 28.094 88.007 1 26.96 ? N9 SAH 328 A 1 HETATM 18 C C8 SAH . . . D 4 -13.154 28.882 88.833 1 26.83 ? C8 SAH 328 A 1 HETATM 19 N N7 SAH . . . D 4 -12.031 28.359 89.194 1 28.25 ? N7 SAH 328 A 1 HETATM 20 C C5 SAH . . . D 4 -12.014 27.082 88.565 1 27.69 ? C5 SAH 328 A 1 HETATM 21 C C6 SAH . . . D 4 -11.031 26.022 88.576 1 26.88 ? C6 SAH 328 A 1 HETATM 22 N N6 SAH . . . D 4 -9.876 26.08 89.24 1 27.65 ? N6 SAH 328 A 1 HETATM 23 N N1 SAH . . . D 4 -11.365 24.919 87.843 1 27.26 ? N1 SAH 328 A 1 HETATM 24 C C2 SAH . . . D 4 -12.533 24.81 87.147 1 29.51 ? C2 SAH 328 A 1 HETATM 25 N N3 SAH . . . D 4 -13.5 25.799 87.107 1 28.77 ? N3 SAH 328 A 1 HETATM 26 C C4 SAH . . . D 4 -13.17 26.902 87.838 1 27.75 ? C4 SAH 328 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #