data_2Z71
#
_model_server_result.job_id            1JdL0Bs6EcehefupP_BCFg 
_model_server_result.datetime_utc      '2025-02-05 14:09:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2z71 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":904}' 
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_entry.id    2Z71 
#
_exptl.entry_id    2Z71 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              350.39 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S,5R,6R)-3,3-DIMETHYL-7-OXO-6-(2-PHENOXYACETAMIDO)-4-THIA-1- AZABICYCLO(3.2.0)HEPTANE-2-CARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Z71 
_cell.length_a            129.73 
_cell.length_b            158.89 
_cell.length_c            90.742 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2Z71 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 45.371 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C16 H18 N2 O5 S' 
_chem_comp.formula_weight    350.39 
_chem_comp.id                PNV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S,5R,6R)-3,3-DIMETHYL-7-OXO-6-(2-PHENOXYACETAMIDO)-4-THIA-1- AZABICYCLO(3.2.0)HEPTANE-2-CARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PENICILLIN V' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C21 PNV doub 260 n y 
C22 C23 PNV sing 261 n y 
C21 C20 PNV sing 262 n y 
C23 C24 PNV doub 263 n y 
C20 C19 PNV doub 264 n y 
C24 C19 PNV sing 265 n y 
C19 O1 PNV sing 266 n n 
O1 C2 PNV sing 267 n n 
C2 C3 PNV sing 268 n n 
C3 N4 PNV sing 269 n n 
C3 O18 PNV doub 270 n n 
N4 C5 PNV sing 271 n n 
C5 C6 PNV sing 272 n n 
C5 C8 PNV sing 273 n n 
O17 C6 PNV doub 274 n n 
C6 N7 PNV sing 275 n n 
C8 N7 PNV sing 276 n n 
C8 S11 PNV sing 277 n n 
N7 C9 PNV sing 278 n n 
S11 C10 PNV sing 279 n n 
C9 C10 PNV sing 280 n n 
C9 C13 PNV sing 281 n n 
C10 C15 PNV sing 282 n n 
C10 C12 PNV sing 283 n n 
C13 O16 PNV doub 284 n n 
C13 O14 PNV sing 285 n n 
C24 H1 PNV sing 286 n n 
C23 H2 PNV sing 287 n n 
C22 H3 PNV sing 288 n n 
C21 H4 PNV sing 289 n n 
C20 H5 PNV sing 290 n n 
C2 H6 PNV sing 291 n n 
C2 H7 PNV sing 292 n n 
N4 H8 PNV sing 293 n n 
C5 H9 PNV sing 294 n n 
C8 H10 PNV sing 295 n n 
C12 H11 PNV sing 296 n n 
C12 H12 PNV sing 297 n n 
C12 H13 PNV sing 298 n n 
C15 H14 PNV sing 299 n n 
C15 H15 PNV sing 300 n n 
C15 H16 PNV sing 301 n n 
C9 H17 PNV sing 302 n n 
O14 H18 PNV sing 303 n n 
#
_atom_sites.entry_id                     2Z71 
_atom_sites.fract_transf_matrix[1][1]    0.00771 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01102 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PNV A 1 903 903 PNV PV3 . 
D 2 PNV C 1 904 904 PNV PV3 . 
E 3 HOH A 1 904 1 HOH HOH . 
E 3 HOH A 2 905 4 HOH HOH . 
E 3 HOH A 3 906 6 HOH HOH . 
E 3 HOH A 4 907 7 HOH HOH . 
E 3 HOH A 5 908 8 HOH HOH . 
E 3 HOH A 6 909 9 HOH HOH . 
E 3 HOH A 7 910 10 HOH HOH . 
E 3 HOH A 8 911 17 HOH HOH . 
E 3 HOH A 9 912 22 HOH HOH . 
E 3 HOH A 10 913 27 HOH HOH . 
E 3 HOH A 11 914 32 HOH HOH . 
E 3 HOH A 12 915 36 HOH HOH . 
E 3 HOH A 13 916 38 HOH HOH . 
E 3 HOH A 14 917 40 HOH HOH . 
E 3 HOH A 15 918 44 HOH HOH . 
E 3 HOH A 16 919 47 HOH HOH . 
E 3 HOH A 17 920 48 HOH HOH . 
E 3 HOH A 18 921 13 HOH HOH . 
F 3 HOH C 1 905 2 HOH HOH . 
F 3 HOH C 2 906 3 HOH HOH . 
F 3 HOH C 3 907 5 HOH HOH . 
F 3 HOH C 4 908 11 HOH HOH . 
F 3 HOH C 5 909 12 HOH HOH . 
F 3 HOH C 6 911 14 HOH HOH . 
F 3 HOH C 7 912 15 HOH HOH . 
F 3 HOH C 8 913 16 HOH HOH . 
F 3 HOH C 9 914 18 HOH HOH . 
F 3 HOH C 10 915 19 HOH HOH . 
F 3 HOH C 11 916 20 HOH HOH . 
F 3 HOH C 12 917 21 HOH HOH . 
F 3 HOH C 13 918 23 HOH HOH . 
F 3 HOH C 14 919 24 HOH HOH . 
F 3 HOH C 15 920 25 HOH HOH . 
F 3 HOH C 16 921 26 HOH HOH . 
F 3 HOH C 17 922 28 HOH HOH . 
F 3 HOH C 18 923 29 HOH HOH . 
F 3 HOH C 19 924 30 HOH HOH . 
F 3 HOH C 20 925 31 HOH HOH . 
F 3 HOH C 21 926 33 HOH HOH . 
F 3 HOH C 22 927 34 HOH HOH . 
F 3 HOH C 23 928 35 HOH HOH . 
F 3 HOH C 24 929 37 HOH HOH . 
F 3 HOH C 25 930 39 HOH HOH . 
F 3 HOH C 26 931 41 HOH HOH . 
F 3 HOH C 27 932 42 HOH HOH . 
F 3 HOH C 28 933 43 HOH HOH . 
F 3 HOH C 29 934 45 HOH HOH . 
F 3 HOH C 30 935 46 HOH HOH . 
F 3 HOH C 31 936 49 HOH HOH . 
F 3 HOH C 32 937 50 HOH HOH . 
F 3 HOH C 33 938 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 PNV . . . D 2 12.954 78.369 10.32 1 61.04 ? C24 PNV 904 C 1 
HETATM 2 C C23 PNV . . . D 2 11.778 78.799 10.936 1 55.19 ? C23 PNV 904 C 1 
HETATM 3 C C22 PNV . . . D 2 11.699 78.897 12.314 1 49.47 ? C22 PNV 904 C 1 
HETATM 4 C C21 PNV . . . D 2 12.793 78.559 13.068 1 57.59 ? C21 PNV 904 C 1 
HETATM 5 C C20 PNV . . . D 2 13.984 78.127 12.475 1 63.6 ? C20 PNV 904 C 1 
HETATM 6 C C19 PNV . . . D 2 14.094 78.036 11.078 1 62.84 ? C19 PNV 904 C 1 
HETATM 7 O O1 PNV . . . D 2 15.284 77.589 10.516 1 63.89 ? O1 PNV 904 C 1 
HETATM 8 C C2 PNV . . . D 2 16.011 78.096 9.377 1 62.5 ? C2 PNV 904 C 1 
HETATM 9 C C3 PNV . . . D 2 15.187 78.194 8.11 1 63.62 ? C3 PNV 904 C 1 
HETATM 10 O O18 PNV . . . D 2 14.702 77.25 7.523 1 61.59 ? O18 PNV 904 C 1 
HETATM 11 N N4 PNV . . . D 2 15.12 79.448 7.722 1 66.74 ? N4 PNV 904 C 1 
HETATM 12 C C5 PNV . . . D 2 14.403 80.16 6.668 1 66.58 ? C5 PNV 904 C 1 
HETATM 13 C C6 PNV . . . D 2 13.075 79.563 6.373 1 66.11 ? C6 PNV 904 C 1 
HETATM 14 O O17 PNV . . . D 2 12.077 79.365 7.069 1 66.61 ? O17 PNV 904 C 1 
HETATM 15 C C8 PNV . . . D 2 14.726 80.13 5.143 1 64.17 ? C8 PNV 904 C 1 
HETATM 16 N N7 PNV . . . D 2 13.46 79.401 5.128 1 62.99 ? N7 PNV 904 C 1 
HETATM 17 S S11 PNV . . . D 2 15.601 78.913 4.223 1 66.27 ? S11 PNV 904 C 1 
HETATM 18 C C10 PNV . . . D 2 14.27 78.453 3.148 1 62.88 ? C10 PNV 904 C 1 
HETATM 19 C C12 PNV . . . D 2 14.33 79.368 1.925 1 65.61 ? C12 PNV 904 C 1 
HETATM 20 C C15 PNV . . . D 2 14.402 76.999 2.77 1 65.03 ? C15 PNV 904 C 1 
HETATM 21 C C9 PNV . . . D 2 13.011 78.558 4.03 1 61.58 ? C9 PNV 904 C 1 
HETATM 22 C C13 PNV . . . D 2 11.656 78.851 3.418 1 66.35 ? C13 PNV 904 C 1 
HETATM 23 O O14 PNV . . . D 2 11.184 77.986 2.652 1 65.66 ? O14 PNV 904 C 1 
HETATM 24 O O16 PNV . . . D 2 11.031 79.897 3.738 1 64.7 ? O16 PNV 904 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           24 
#