data_2Z73 # _model_server_result.job_id dPvxwFE0MZ8bwsNYD_xNHQ _model_server_result.datetime_utc '2024-11-06 01:51:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1005}' # _entry.id 2Z73 # _exptl.entry_id 2Z73 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Z73 _cell.length_a 122.55 _cell.length_b 122.55 _cell.length_c 158.74 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1 B,H,I,J,K,L,M,N,P 2 1 A,C,D,E,F,G,O 3 1 B,H,I,J,K,L,M,N,P 4 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.275 106.131413 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 108 A CYS 108 1_555 A SG CYS 186 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 B SG CYS 108 B CYS 108 1_555 B SG CYS 186 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A NZ LYS 305 A LYS 305 1_555 D C15 RET . A RET 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A SG CYS 337 A CYS 337 1_555 F C1 PLM . A PLM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale3 B NZ LYS 305 B LYS 305 1_555 J C15 RET . B RET 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale4 B SG CYS 337 B CYS 337 1_555 L C1 PLM . B PLM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2Z73 _atom_sites.fract_transf_matrix[1][1] 0.00816 _atom_sites.fract_transf_matrix[1][2] 0.004711 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BOG A 1 1005 1005 BOG BOG . D 3 RET A 1 1000 1000 RET RET . E 4 PLM A 1 1001 1001 PLM PLM . F 4 PLM A 1 1002 1002 PLM PLM . G 5 TWT A 1 1003 1003 TWT TWT . H 2 BOG B 1 1005 1005 BOG BOG . I 6 SO4 B 1 1006 1006 SO4 SO4 . J 3 RET B 1 1000 1000 RET RET . K 4 PLM B 1 1001 1001 PLM PLM . L 4 PLM B 1 1002 1002 PLM PLM . M 5 TWT B 1 1003 1003 TWT TWT . N 7 PC1 B 1 1004 1004 PC1 PC1 . O 8 HOH A 1 500 500 HOH HOH . O 8 HOH A 2 501 501 HOH HOH . O 8 HOH A 3 502 502 HOH HOH . O 8 HOH A 4 503 503 HOH HOH . O 8 HOH A 5 504 504 HOH HOH . O 8 HOH A 6 505 505 HOH HOH . O 8 HOH A 7 506 506 HOH HOH . O 8 HOH A 8 507 507 HOH HOH . O 8 HOH A 9 508 508 HOH HOH . O 8 HOH A 10 509 509 HOH HOH . O 8 HOH A 11 510 510 HOH HOH . O 8 HOH A 12 511 511 HOH HOH . O 8 HOH A 13 512 512 HOH HOH . O 8 HOH A 14 513 513 HOH HOH . O 8 HOH A 15 514 514 HOH HOH . O 8 HOH A 16 515 515 HOH HOH . O 8 HOH A 17 516 516 HOH HOH . O 8 HOH A 18 517 517 HOH HOH . O 8 HOH A 19 518 518 HOH HOH . O 8 HOH A 20 519 519 HOH HOH . O 8 HOH A 21 520 520 HOH HOH . O 8 HOH A 22 521 521 HOH HOH . O 8 HOH A 23 522 522 HOH HOH . O 8 HOH A 24 523 523 HOH HOH . O 8 HOH A 25 524 524 HOH HOH . O 8 HOH A 26 525 525 HOH HOH . O 8 HOH A 27 526 526 HOH HOH . O 8 HOH A 28 527 527 HOH HOH . P 8 HOH B 1 500 500 HOH HOH . P 8 HOH B 2 501 501 HOH HOH . P 8 HOH B 3 502 502 HOH HOH . P 8 HOH B 4 503 503 HOH HOH . P 8 HOH B 5 504 504 HOH HOH . P 8 HOH B 6 505 505 HOH HOH . P 8 HOH B 7 506 506 HOH HOH . P 8 HOH B 8 507 507 HOH HOH . P 8 HOH B 9 508 508 HOH HOH . P 8 HOH B 10 509 509 HOH HOH . P 8 HOH B 11 510 510 HOH HOH . P 8 HOH B 12 511 511 HOH HOH . P 8 HOH B 13 512 512 HOH HOH . P 8 HOH B 14 513 513 HOH HOH . P 8 HOH B 15 514 514 HOH HOH . P 8 HOH B 16 515 515 HOH HOH . P 8 HOH B 17 516 516 HOH HOH . P 8 HOH B 18 517 517 HOH HOH . P 8 HOH B 19 518 518 HOH HOH . P 8 HOH B 20 519 519 HOH HOH . P 8 HOH B 21 520 520 HOH HOH . P 8 HOH B 22 521 521 HOH HOH . P 8 HOH B 23 522 522 HOH HOH . P 8 HOH B 24 523 523 HOH HOH . P 8 HOH B 25 524 524 HOH HOH . P 8 HOH B 26 525 525 HOH HOH . P 8 HOH B 27 526 526 HOH HOH . P 8 HOH B 28 527 527 HOH HOH . P 8 HOH B 29 528 528 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . H 2 23.654 37.044 -18.296 1 113.61 ? C1 BOG 1005 B 1 HETATM 2 O O1 BOG . . . H 2 22.989 37.773 -17.362 1 109.33 ? O1 BOG 1005 B 1 HETATM 3 C C2 BOG . . . H 2 22.499 36.435 -19.055 1 115.57 ? C2 BOG 1005 B 1 HETATM 4 O O2 BOG . . . H 2 21.628 35.58 -18.217 1 115.84 ? O2 BOG 1005 B 1 HETATM 5 C C3 BOG . . . H 2 23.214 35.661 -20.07 1 116.95 ? C3 BOG 1005 B 1 HETATM 6 O O3 BOG . . . H 2 22.168 35.106 -20.788 1 116.73 ? O3 BOG 1005 B 1 HETATM 7 C C4 BOG . . . H 2 24.135 36.62 -20.929 1 117.42 ? C4 BOG 1005 B 1 HETATM 8 O O4 BOG . . . H 2 24.824 35.895 -21.898 1 118.22 ? O4 BOG 1005 B 1 HETATM 9 C C5 BOG . . . H 2 25.227 37.206 -20.143 1 117.78 ? C5 BOG 1005 B 1 HETATM 10 O O5 BOG . . . H 2 24.517 37.94 -19.154 1 115.18 ? O5 BOG 1005 B 1 HETATM 11 C C6 BOG . . . H 2 26.136 38.178 -21.004 1 119.25 ? C6 BOG 1005 B 1 HETATM 12 O O6 BOG . . . H 2 27.365 38.569 -20.188 1 121.32 ? O6 BOG 1005 B 1 HETATM 13 C C1' BOG . . . H 2 23.792 37.507 -16.245 1 103.55 ? C1' BOG 1005 B 1 HETATM 14 C C2' BOG . . . H 2 23.327 38.522 -15.318 1 98.79 ? C2' BOG 1005 B 1 HETATM 15 C C3' BOG . . . H 2 23.4 37.803 -14.012 1 92.24 ? C3' BOG 1005 B 1 HETATM 16 C C4' BOG . . . H 2 22.256 38.337 -13.355 1 86.13 ? C4' BOG 1005 B 1 HETATM 17 C C5' BOG . . . H 2 22.304 37.706 -12.013 1 81.43 ? C5' BOG 1005 B 1 HETATM 18 C C6' BOG . . . H 2 20.915 37.484 -11.751 1 76.37 ? C6' BOG 1005 B 1 HETATM 19 C C7' BOG . . . H 2 20.971 36.834 -10.433 1 71.92 ? C7' BOG 1005 B 1 HETATM 20 C C8' BOG . . . H 2 19.864 35.943 -10.531 1 68.73 ? C8' BOG 1005 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #